These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2157#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [AATTAAAATCGCAAAACTGATCGCTTTTGCGTGACTTTAGAAAGTACAGGAAATTAGATTCCATTGAACGTATTTCGAGATAACTATAATAATAATAATTGGAATTTTGTTTGTCTGGTAGTTAGACACGAATTTCTTATTTTAATTTAAATAAATACAAGAGAATCGTTTGATAATTAAGTGCAACAGTGTGAAGGTAATGAACCTAACCTAAAAATAAAATTTAAGAGAAATATACATGTGTACGTGATTTCTGATTGGATTTTTGGAGACGAGAAGTATCGTGGATGAATCTTAAAAAGATATTGATTTCACAAAAGGAACGAAAGATCGCATGGAACGCATTCCTTGGAAAGAGCACGACGGAAATGGAGACAGAGTACACCGGCTCACCCTGGTCGATACATCGACTTACTCTCGAGCTTGTCACAGTTGGTGACTTTGCCCTTCCAGTCACAGGTCTGTTTGTCCAAATCAAAGGCCAACCCGCTGGGGCACGTGATTTGCTTCAGGCCGGATTTCGTGCACCTGTGCGTGTCGGACAGAAAACAAAGGGGATGCCGTTTAATCAAATAGAAATCTGTATGT] [+] EMBL BI503974 [AATTAAAATCGCAAAACTGATCGCTTTTGCGTGACTTTAGAAAGTACAGGAAATTAGATTCCATTGAACGTATTTCGAGATAACTATAATAATAATAATTGGAATTTTGTTTGTCTGGTAGTTAGACACGAATTTCTTATTTTAATTTAAATAAATACAAGAGAATCGTTTGATAATTAAGTGCAACAGTGTGAAGGTAATGAACCTAACCTAAAAATAAAATTTAAGAGAAATATACATGTGTACGTGATTTCTGATTGGATTTTTGGAGACGAGAAGTATCGTGGATGAATCTTAAAAAGATATTGATTTCACAAAAGGAACGAAAGATCGCATGGAACGCATTCCTTGGAAAGAGCACGACGGAAATGGAGACAGAGTACACCGGCTCACCCTGGTCGATACATCGACTTACTCTCGAGCTTGTCACAGTTGGTGACTTTGCCCTTCCAGTCACAGGTCTGTTTGTCCAAATCAAAGGCCAACCCGCTGGGGCACGTGATTTGCTTCAGGCCGGATTTCGTGCACCTGTGCGTGTCGGACAGAAAACAAAGGGGATGCCGTTTAATCAAATAGAAATCTGTATGT] consensusID : consensus_2157#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence [AGAACGTTATTTAAACTCACGTAACTCAAAGATATGCACGAGTGGAAAAATATCGAATTAAAATCGCAAAACTGATCGCTTTTGCGTGACTTTAGAAAGTACAGGAAATTAGATTCCATTGAACGTATTTCGAGATAACTATAATAATAATAATTGGAATTTTGTTTGTCTGGTAGTTAGACACGAATTTCTTATTTTAATTTAAATAAATACAAGAGAATCGTTTGATAATTAAGTGCAACAGTGTGAAGAGATATTGATTTCACAAAAGGAACGAAAGATCGCATGGAACGCATTCCTTGGAAAGAGCACGACGGAAATGGAGACAGAGTACACCGGCTCACCCTGGTCGATACATCGACTTACTCTCGAGTTGGTCGCAATTCTTCACGTTCGTCTTCCAGTCGCACGTTTGCCTCTCAATGTCGAACGCCAGACCTGTCGGACATCGGACTGTTGCCAACCTGGTCACGCCAATCTCGCTTGCTTTGTCGCATCTGTGATTCAATTT] [+] EMBL BI510195 [AGAACGTTATTTAAACTCACGTAACTCAAAGATATGCACGAGTGGAAAAATATCGAATTAAAATCGCAAAACTGATCGCTTTTGCGTGACTTTAGAAAGTACAGGAAATTAGATTCCATTGAACGTATTTCGAGATAACTATAATAATAATAATTGGAATTTTGTTTGTCTGGTAGTTAGACACGAATTTCTTATTTTAATTTAAATAAATACAAGAGAATCGTTTGATAATTAAGTGCAACAGTGTGAAGAGATATTGATTTCACAAAAGGAACGAAAGATCGCATGGAACGCATTCCTTGGAAAGAGCACGACGGAAATGGAGACAGAGTACACCGGCTCACCCTGGTCGATACATCGACTTACTCTCGAGTTGGTCGCAATTCTTCACGTTCGTCTTCCAGTCGCACGTTTGCCTCTCAATGTCGAACGCCAGACCTGTCGGACATCGGACTGTTGCCAACCTGGTCACGCCAATCTCGCTTGCTTTGTCGCATCTGTGATTCAATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2157#0 -------------------------------------------------------AATTA 5 consensus_2157#1 AGAACGTTATTTAAACTCACGTAACTCAAAGATATGCACGAGTGGAAAAATATCGAATTA 60 ***** consensus_2157#0 AAATCGCAAAACTGATCGCTTTTGCGTGACTTTAGAAAGTACAGGAAATTAGATTCCATT 65 consensus_2157#1 AAATCGCAAAACTGATCGCTTTTGCGTGACTTTAGAAAGTACAGGAAATTAGATTCCATT 120 ************************************************************ consensus_2157#0 GAACGTATTTCGAGATAACTATAATAATAATAATTGGAATTTTGTTTGTCTGGTAGTTAG 125 consensus_2157#1 GAACGTATTTCGAGATAACTATAATAATAATAATTGGAATTTTGTTTGTCTGGTAGTTAG 180 ************************************************************ consensus_2157#0 ACACGAATTTCTTATTTTAATTTAAATAAATACAAGAGAATCGTTTGATAATTAAGTGCA 185 consensus_2157#1 ACACGAATTTCTTATTTTAATTTAAATAAATACAAGAGAATCGTTTGATAATTAAGTGCA 240 ************************************************************ consensus_2157#0 ACAGTGTGAAGGTAATGAACCTAACCTAAAAATAAAATTTAAGAGAAATATACATGTGTA 245 consensus_2157#1 ACAGTGTGAAG------------------------------------------------- 251 *********** consensus_2157#0 CGTGATTTCTGATTGGATTTTTGGAGACGAGAAGTATCGTGGATGAATCTTAAAAAGATA 305 consensus_2157#1 -------------------------------------------------------AGATA 256 ***** consensus_2157#0 TTGATTTCACAAAAGGAACGAAAGATCGCATGGAACGCATTCCTTGGAAAGAGCACGACG 365 consensus_2157#1 TTGATTTCACAAAAGGAACGAAAGATCGCATGGAACGCATTCCTTGGAAAGAGCACGACG 316 ************************************************************ consensus_2157#0 GAAATGGAGACAGAGTACACCGGCTCACCCTGGTCGATACATCGACTTACTCTCGAGCTT 425 consensus_2157#1 GAAATGGAGACAGAGTACACCGGCTCACCCTGGTCGATACATCGACTTACTCTCGAGTTG 376 ********************************************************* * consensus_2157#0 GTCACAGTTGGTGACTTTGCCCTTCCAGTCACAGGTCTGTTTGTCCAAATCAAAGGCCAA 485 consensus_2157#1 GTCGCAATTCTTCACGTTCGTCTTCCAGTCGCACGTTTGCCTCTCAATGTCGAACGCCAG 436 *** ** ** * ** ** ********* ** ** ** * ** * ** ** **** consensus_2157#0 CCCGCTGGGGCACGTGATTTGCTTCAGGCCGGATTTCGTGCACCTGTGCGTGTCGGACAG 545 consensus_2157#1 ACCTGTCGGACATCGGACT-GTTGCCAACCTGGTCACGCCAATCT-CGCTTGCTTTGTCG 494 ** * ** ** ** * * * * ** * * ** * ** ** ** * consensus_2157#0 AAAACAAAGGGGATGCCGTTTAATCAAATAGAAATCTGTATGT 588 consensus_2157#1 ----CATCTGTGATTCAATTT---------------------- 511 ** * *** * *** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |