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Apis mellifera
cluster # 2159 cluster # 2159       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2159#0 length = 498 sequences # 1  
 consensus_2159#1 length = 343 sequences # 1  
consensusID : consensus_2159#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 498
fasta sequence 
                              [TTTTTTTTTTTTCTCTTGAGCATTATAAATTGCGGTGTGAAAGACCAATAGTTTTTCAAAAATTGTATTGTATGCAAGATGATGTTTGTACTGTTAAATAAAAATAGGTCTTTTAGCTATTAAATAATCAAACTGACCAGAATTATAGTTATAAATCATTAATCTCATTACTTATTAAAATCTATCTTTCAATTAAAAAAAAATTTTTTTTTAAACTGAACTATGTAATGTATATGAACTACGTAAATAAAATTATACTAAGGAAATATAGTTTTTGAACATGGATTTAGTTGATTTCTAAAATGTTTTGCCAAGAAAGCTGCAATCACCATCTATTAGGAGGATCGCATGAGGTGACAGAGGACATAGCGATGATATTAGACTAGAGGAAAGCACTAGGATTAGCTCGTGGATCTTTCTGATTCCTGTATCGCACGGTCAACCAAACACCAACAAATTCAGTAAAACTGAAAAACAATCCTATGCTGCCACATAGCT]

[+] EMBL BI514299             [TTTTTTTTTTTTCTCTTGAGCATTATAAATTGCGGTGTGAAAGACCAATAGTTTTTCAAAAATTGTATTGTATGCAAGATGATGTTTGTACTGTTAAATAAAAATAGGTCTTTTAGCTATTAAATAATCAAACTGACCAGAATTATAGTTATAAATCATTAATCTCATTACTTATTAAAATCTATCTTTCAATTAAAAAAAAATTTTTTTTTAAACTGAACTATGTAATGTATATGAACTACGTAAATAAAATTATACTAAGGAAATATAGTTTTTGAACATGGATTTAGTTGATTTCTAAAATGTTTTGCCAAGAAAGCTGCAATCACCATCTATTAGGAGGATCGCATGAGGTGACAGAGGACATAGCGATGATATTAGACTAGAGGAAAGCACTAGGATTAGCTCGTGGATCTTTCTGATTCCTGTATCGCACGGTCAACCAAACACCAACAAATTCAGTAAAACTGAAAAACAATCCTATGCTGCCACATAGCT]




>consensus_2159#0
TTTTTTTTTTTTCTCTTGAGCATTATAAATTGCGGTGTGAAAGACCAATAGTTTTTCAAA
AATTGTATTGTATGCAAGATGATGTTTGTACTGTTAAATAAAAATAGGTCTTTTAGCTAT
TAAATAATCAAACTGACCAGAATTATAGTTATAAATCATTAATCTCATTACTTATTAAAA
TCTATCTTTCAATTAAAAAAAAATTTTTTTTTAAACTGAACTATGTAATGTATATGAACT
ACGTAAATAAAATTATACTAAGGAAATATAGTTTTTGAACATGGATTTAGTTGATTTCTA
AAATGTTTTGCCAAGAAAGCTGCAATCACCATCTATTAGGAGGATCGCATGAGGTGACAG
AGGACATAGCGATGATATTAGACTAGAGGAAAGCACTAGGATTAGCTCGTGGATCTTTCT
GATTCCTGTATCGCACGGTCAACCAAACACCAACAAATTCAGTAAAACTGAAAAACAATC
CTATGCTGCCACATAGCT

consensusID : consensus_2159#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence 
                              [TCATTAATCTCATTACTTATTAAAATCTATCTTTCAATTAAAAAAAAATTTTTTTTTAAACTGAACTATGTAATGTATATGAACTACGTAAATAAAATTATACTAAGGAAATATAGTTTTTGAACATGGATTTAGTTGATTTCTAAAATGTTTTGCCAAGAAAGCTGCAATCACCTGAAAAAGATGAAAATGATTTGAAATATTTTATATTAATTCTTAAATTTAATAAAACTGGTATATATATTGAATTACATAAATATGATATGATGTATGTTATATATAAAATGTGACTAATATAAATTATTTTAAAAATCAATATGTAAAATAAAAAATCGCGACATGA]

[+] EMBL BI516111             [TCATTAATCTCATTACTTATTAAAATCTATCTTTCAATTAAAAAAAAATTTTTTTTTAAACTGAACTATGTAATGTATATGAACTACGTAAATAAAATTATACTAAGGAAATATAGTTTTTGAACATGGATTTAGTTGATTTCTAAAATGTTTTGCCAAGAAAGCTGCAATCACCTGAAAAAGATGAAAATGATTTGAAATATTTTATATTAATTCTTAAATTTAATAAAACTGGTATATATATTGAATTACATAAATATGATATGATGTATGTTATATATAAAATGTGACTAATATAAATTATTTTAAAAATCAATATGTAAAATAAAAAATCGCGACATGA]




>consensus_2159#1
TCATTAATCTCATTACTTATTAAAATCTATCTTTCAATTAAAAAAAAATTTTTTTTTAAA
CTGAACTATGTAATGTATATGAACTACGTAAATAAAATTATACTAAGGAAATATAGTTTT
TGAACATGGATTTAGTTGATTTCTAAAATGTTTTGCCAAGAAAGCTGCAATCACCTGAAA
AAGATGAAAATGATTTGAAATATTTTATATTAATTCTTAAATTTAATAAAACTGGTATAT
ATATTGAATTACATAAATATGATATGATGTATGTTATATATAAAATGTGACTAATATAAA
TTATTTTAAAAATCAATATGTAAAATAAAAAATCGCGACATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2159#0      TTTTTTTTTTTTCTCTTGAGCATTATAAATTGCGGTGTGAAAGACCAATAGTTTTTCAAA 60
consensus_2159#1      ------------------------------------------------------------
                                                                                  

consensus_2159#0      AATTGTATTGTATGCAAGATGATGTTTGTACTGTTAAATAAAAATAGGTCTTTTAGCTAT 120
consensus_2159#1      ------------------------------------------------------------
                                                                                  

consensus_2159#0      TAAATAATCAAACTGACCAGAATTATAGTTATAAATCATTAATCTCATTACTTATTAAAA 180
consensus_2159#1      -----------------------------------TCATTAATCTCATTACTTATTAAAA 25
                                                         *************************

consensus_2159#0      TCTATCTTTCAATTAAAAAAAAATTTTTTTTTAAACTGAACTATGTAATGTATATGAACT 240
consensus_2159#1      TCTATCTTTCAATTAAAAAAAAATTTTTTTTTAAACTGAACTATGTAATGTATATGAACT 85
                      ************************************************************

consensus_2159#0      ACGTAAATAAAATTATACTAAGGAAATATAGTTTTTGAACATGGATTTAGTTGATTTCTA 300
consensus_2159#1      ACGTAAATAAAATTATACTAAGGAAATATAGTTTTTGAACATGGATTTAGTTGATTTCTA 145
                      ************************************************************

consensus_2159#0      AAATGTTTTGCCAAGAAAGCTGCAATCACCATCTATTAGGAGGATCGCATGAGGTGACAG 360
consensus_2159#1      AAATGTTTTGCCAAGAAAGCTGCAATCACC--TGAAAAAGATGA--AAATGATTTGAAAT 201
                      ******************************    *  * ** **    ****  *** * 

consensus_2159#0      AGGACATAGCGATGATATTAGACTAGAGGAAAGCACTAGG---ATTAGCT--CGTGGATC 415
consensus_2159#1      ATTTTATATTAAT--TCTTAAATTTAATAAAACTGGTATATATATTGAATTACATAAATA 259
                      *    ***   **  * *** * *  *  ***    **     ***   *  * *  ** 

consensus_2159#0      TT-TCTGATTCCTGTATCGCACGG--TCAACCAAACACCAACAAATTCAGTAAAACTGAA 472
consensus_2159#1      TGATATGATGTATGTTATATATAAAATGTGACTAATATAAATTATTTTAAAAATCAATAT 319
                      *  * ****   ***     *     *    * ** *  **  * ** *  **     * 

consensus_2159#0      AAACAATCCTATGCTGCCACATAGCT 498
consensus_2159#1      GTAAAATAAAAAATCGCGACATGA-- 343
                        * ***   *    ** ****


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)