These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_218#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 692 fasta sequence [TCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTCAGTACATGCCGAATTAAGGTGAAACCGCGAATGGCTCATTAAATCAGTTATGGTTCATTAGATCGTGGACACATTTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAACAGAATTCCTCTCAGAGATGGGAGGAATGCTTTTATTAGATCAAAACCAATCGGTGGCGGACGGCTCGTCCGTTCGTCCATCGTTTGTTTTGGTGACTCTGAATAACTTTGTGCTGATCGCATGGTCATCTAGCACCGGCGACGCATCTTTCAAATGTCTGCCTTATCAACTGTCGATGGTAGGTTCTGCGCCTACCATGGTTGTAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACAGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGGCACGGGGAGGTAGTGACGAAAAATAACGATACGGGACTCATCCGAGGCCCCGTAATCGGAATGAGTACACTTTAAATCCTTTAACGAGGACCAATTGGAGGGCAGGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGAATCTGTGTGTCACAGTGTCGGTTCACCGCTCGCGGTGTTTAACTGGC] [+] EMBL BI513252 [TCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTCAGTACATGCCGAATTAAGGTGAAACCGCGAATGGCTCATTAAATCAGTTATGGTTCATTAGATCGTGGACACATTTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAACAGAATTCCTCTCAGAGATGGGAGGAATGCTTTTATTAGATCAAAACCAATCGGTGGCGGACGGCTCGTCCGTTCGTCCATCGTTTGTTTTGGTGACTCTGAATAACTTTGTGCTGATCGCATGGTCATCTAGCACCGGCGACGCATCTTTCAAATGTCTGCCTTATCAACTGTCGATGGTAGGTTCTGCGCCTACCATGGTTGTAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACAGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGGCACGGGGAGGTAGTGACGAAAAATAAC ] [+] EMBL BI513307 [TCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTCAGTACATGCCGAATTAAGGTGAAACCGCGAATGGCTCATTAAATCAGTTATGGTTCATTAGATCGTGGACACATTTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAACAGAATTCCTCTCAGAGATGGGAGGAATGCTTTTATTAGATCAAAACCAATCGGTGGCGGACGGCTCGTCCGTTCGTCCATCGTTTGTTTTGGTGACTCTGAATAACTTTGTGCTGATCGCATGGTCATCTAGCACCGGCGACGCATCTTTCAAATGTCTGCCTTATCAACTGTCGATGGTAGGTTCTGCGCCTACCATGGTTGTAACGGGTAACG ] [+] EMBL BI511340 [ GCGAATGGCTCATTAAATCAGTTATGGTTCATTAGATCGTGGACACATTTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAACAGAATTCCTCTCAGAGATGGGAGGAATGCTTTTATTAGATCAAAACCAATCGGTGGCGGACGGCTCGTCCGTTCGTCCATCGTTTGTTTTGGTGACTCTGAATAACTTTGTGCTGATCGCATGGTCATCTAGCACCGGCGACGCATCTTTCAAATGTCTGCCTTATCAACTGTCGATGGTAGGTTCTGCGCCTACCATGGTTGTAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGA ] [+] EMBL BG101658 [ aGGGAGGAATGCTTTTATTAGATCAAAACCAATCGGTGGCGGACGGCTCGTCCGTTCGTCCATCGTTTGTTTTGGTGACTCTGAATAACTTTGTGCTGATCGCATGGTCATCTAGCACCGGCGACGCATCTTTCAAATGTCTGCCTTATCAACTGTCGATGGTAGGTTCTGCGCCTACCATGGTTGTAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACAGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGGCACGGGGAGGTAGTGACGAAAAATAACGATACGGGACTCATCCGAGGCCCCGTAATCGGAATGAGTACACTTTAAATCCTTTAACGAGGACCAATTGGAGGGCAGGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGAATCTGTGTGTCACAGTGTCGGTTCACCGCTCGCGGTGTTTAACTGGC] consensusID : consensus_218#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence [CCCCAGCCANAGGCGCCCCCAATANAATANATCATTAGCNATCCTCTGATAAGCTTTATATGGGGAATAAAAAAGAAAAACAAGATCTTAGTTNAGNGTGGTNGCGGCCGAGGTACACTTTAAATCCTTTAACNAGGACCAATTGGAGGGCAAGTCTGGTGCCANCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCTGTAGTTGAATCTGTGTGTCACAGTGTCGGTCACCGCTCNCGGTGTTTAN] [-] EMBL BG101677 [CCCCAGCCANAGGCGCCCCCAATANAATANATCATTAGCNATCCTCTGATAAGCTTTATATGGGGAATAAAAAAGAAAAACAAGATCTTAGTTNAGNGTGGTNGCGGCCGAGGTACACTTTAAATCCTTTAACNAGGACCAATTGGAGGGCAAGTCTGGTGCCANCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCTGTAGTTGAATCTGTGTGTCACAGTGTCGGTCACCGCTCNCGGTGTTTAN] consensusID : consensus_218#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 215 fasta sequence [CCTANTAACCGCCNCCNNTGTGCTGGAANTCCNCTTTAGCGTGGTCGCGGCCGAGGTACACTTTAAATCCTTTAACGAGGACCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGAATCTGTGTGTCACAGTGTCGGTCACCGCTCGCGGTGTTTA] [-] EMBL BG101660 [CCTANTAACCGCCNCCNNTGTGCTGGAANTCCNCTTTAGCGTGGTCGCGGCCGAGGTACACTTTAAATCCTTTAACGAGGACCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGAATCTGTGTGTCACAGTGTCGGTCACCGCTCGCGGTGTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_218#1 ------------------------------------------------------------ consensus_218#2 ------------------------------------------------------------ consensus_218#0 TCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTCAGTACATGCCGAATTAAGGTGA 60 consensus_218#1 ------------------------------------------------------------ consensus_218#2 ------------------------------------------------------------ consensus_218#0 AACCGCGAATGGCTCATTAAATCAGTTATGGTTCATTAGATCGTGGACACATTTACTTGG 120 consensus_218#1 ------------------------------------------------------------ consensus_218#2 ------------------------------------------------------------ consensus_218#0 ATAACTGTGGTAATTCTAGAGCTAATACATGCAAACAGAATTCCTCTCAGAGATGGGAGG 180 consensus_218#1 ------------------------------------------------------------ consensus_218#2 ------------------------------------------------------------ consensus_218#0 AATGCTTTTATTAGATCAAAACCAATCGGTGGCGGACGGCTCGTCCGTTCGTCCATCGTT 240 consensus_218#1 ------------------------------------------------------------ consensus_218#2 ------------------------------------------------------------ consensus_218#0 TGTTTTGGTGACTCTGAATAACTTTGTGCTGATCGCATGGTCATCTAGCACCGGCGACGC 300 consensus_218#1 ------------------------------------------------------------ consensus_218#2 ------------------------------------------------------------ consensus_218#0 ATCTTTCAAATGTCTGCCTTATCAACTGTCGATGGTAGGTTCTGCGCCTACCATGGTTGT 360 consensus_218#1 --------------------------------------------------------CCCC 4 consensus_218#2 ------------------------------------------------------------ consensus_218#0 AACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACAGCTACCAC 420 consensus_218#1 AGCCANAGGCGCCCCCAATANAATANATCATTAGCNATCCTC-TGATAAGCTTTATATGG 63 consensus_218#2 ----------------------------------------CC-TANTAACCGCCNCCNNT 19 consensus_218#0 ATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGGCACGGGGAGGTAGTGACGA 480 * * consensus_218#1 GGAATAAAAAAGAAAAACAAGATCTTAGTTNAGNGTGGTNG-CGGCCGAGGTACACTTTA 122 consensus_218#2 GTGCTGGAAN-------------TCCNCTTTAGCGTGGTCG-CGGCCGAGGTACACTTTA 65 consensus_218#0 AAAATAACGAT-----ACGGGACTCATCCGAGGCCCCGTAATCGGAATGAGTACACTTTA 535 * * ** *** ********** consensus_218#1 AATCCTTTAACNAGGACCAATTGGAGGGCAAGTCTGGTGCCANCAGCCGCGGTAATTCCA 182 consensus_218#2 AATCCTTTAACGAGGACCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCA 125 consensus_218#0 AATCCTTTAACGAGGACCAATTGGAGGGCAGGTCTGGTGCCAGCAGCCGCGGTAATTCCA 595 *********** ****************** *********** ***************** consensus_218#1 GCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCTGTAGTTGAATCTGTGTG 242 consensus_218#2 GCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTC-GTAGTTGAATCTGTGTG 184 consensus_218#0 GCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTC-GTAGTTGAATCTGTGTG 654 ****************************************** ***************** consensus_218#1 TCACAGTGTCGGT-CACCGCTCNCGGTGTTTAN----- 274 consensus_218#2 TCACAGTGTCGGT-CACCGCTCGCGGTGTTTA------ 215 consensus_218#0 TCACAGTGTCGGTTCACCGCTCGCGGTGTTTAACTGGC 692 ************* ******** ********* |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |