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Apis mellifera
cluster # 218 cluster # 218       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_218#0 length = 692 sequences # 4  
consensus_218#1 length = 274 sequences # 1  
consensus_218#2 length = 215 sequences # 1  

consensusID : consensus_218#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 692
fasta sequence
                              [TCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTCAGTACATGCCGAATTAAGGTGAAACCGCGAATGGCTCATTAAATCAGTTATGGTTCATTAGATCGTGGACACATTTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAACAGAATTCCTCTCAGAGATGGGAGGAATGCTTTTATTAGATCAAAACCAATCGGTGGCGGACGGCTCGTCCGTTCGTCCATCGTTTGTTTTGGTGACTCTGAATAACTTTGTGCTGATCGCATGGTCATCTAGCACCGGCGACGCATCTTTCAAATGTCTGCCTTATCAACTGTCGATGGTAGGTTCTGCGCCTACCATGGTTGTAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACAGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGGCACGGGGAGGTAGTGACGAAAAATAACGATACGGGACTCATCCGAGGCCCCGTAATCGGAATGAGTACACTTTAAATCCTTTAACGAGGACCAATTGGAGGGCAGGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGAATCTGTGTGTCACAGTGTCGGTTCACCGCTCGCGGTGTTTAACTGGC]

[+] EMBL BI513252             [TCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTCAGTACATGCCGAATTAAGGTGAAACCGCGAATGGCTCATTAAATCAGTTATGGTTCATTAGATCGTGGACACATTTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAACAGAATTCCTCTCAGAGATGGGAGGAATGCTTTTATTAGATCAAAACCAATCGGTGGCGGACGGCTCGTCCGTTCGTCCATCGTTTGTTTTGGTGACTCTGAATAACTTTGTGCTGATCGCATGGTCATCTAGCACCGGCGACGCATCTTTCAAATGTCTGCCTTATCAACTGTCGATGGTAGGTTCTGCGCCTACCATGGTTGTAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACAGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGGCACGGGGAGGTAGTGACGAAAAATAAC                                                                                                                                                                                                            ]
[+] EMBL BI513307             [TCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTCAGTACATGCCGAATTAAGGTGAAACCGCGAATGGCTCATTAAATCAGTTATGGTTCATTAGATCGTGGACACATTTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAACAGAATTCCTCTCAGAGATGGGAGGAATGCTTTTATTAGATCAAAACCAATCGGTGGCGGACGGCTCGTCCGTTCGTCCATCGTTTGTTTTGGTGACTCTGAATAACTTTGTGCTGATCGCATGGTCATCTAGCACCGGCGACGCATCTTTCAAATGTCTGCCTTATCAACTGTCGATGGTAGGTTCTGCGCCTACCATGGTTGTAACGGGTAACG                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BI511340             [                                                                GCGAATGGCTCATTAAATCAGTTATGGTTCATTAGATCGTGGACACATTTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAACAGAATTCCTCTCAGAGATGGGAGGAATGCTTTTATTAGATCAAAACCAATCGGTGGCGGACGGCTCGTCCGTTCGTCCATCGTTTGTTTTGGTGACTCTGAATAACTTTGTGCTGATCGCATGGTCATCTAGCACCGGCGACGCATCTTTCAAATGTCTGCCTTATCAACTGTCGATGGTAGGTTCTGCGCCTACCATGGTTGTAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGA                                                                                                                                                                                                                                                                                            ]
[+] EMBL BG101658             [                                                                                                                                                                             aGGGAGGAATGCTTTTATTAGATCAAAACCAATCGGTGGCGGACGGCTCGTCCGTTCGTCCATCGTTTGTTTTGGTGACTCTGAATAACTTTGTGCTGATCGCATGGTCATCTAGCACCGGCGACGCATCTTTCAAATGTCTGCCTTATCAACTGTCGATGGTAGGTTCTGCGCCTACCATGGTTGTAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACAGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGGCACGGGGAGGTAGTGACGAAAAATAACGATACGGGACTCATCCGAGGCCCCGTAATCGGAATGAGTACACTTTAAATCCTTTAACGAGGACCAATTGGAGGGCAGGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGAATCTGTGTGTCACAGTGTCGGTTCACCGCTCGCGGTGTTTAACTGGC]


>consensus_218#0 TCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTCAGTACATGCCGAATTAAGGTGA AACCGCGAATGGCTCATTAAATCAGTTATGGTTCATTAGATCGTGGACACATTTACTTGG ATAACTGTGGTAATTCTAGAGCTAATACATGCAAACAGAATTCCTCTCAGAGATGGGAGG AATGCTTTTATTAGATCAAAACCAATCGGTGGCGGACGGCTCGTCCGTTCGTCCATCGTT TGTTTTGGTGACTCTGAATAACTTTGTGCTGATCGCATGGTCATCTAGCACCGGCGACGC ATCTTTCAAATGTCTGCCTTATCAACTGTCGATGGTAGGTTCTGCGCCTACCATGGTTGT AACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACAGCTACCAC ATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGGCACGGGGAGGTAGTGACGA AAAATAACGATACGGGACTCATCCGAGGCCCCGTAATCGGAATGAGTACACTTTAAATCC TTTAACGAGGACCAATTGGAGGGCAGGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCC AATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGAATCTGTGTGTCACAG TGTCGGTTCACCGCTCGCGGTGTTTAACTGGC



consensusID : consensus_218#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 274
fasta sequence
                              [CCCCAGCCANAGGCGCCCCCAATANAATANATCATTAGCNATCCTCTGATAAGCTTTATATGGGGAATAAAAAAGAAAAACAAGATCTTAGTTNAGNGTGGTNGCGGCCGAGGTACACTTTAAATCCTTTAACNAGGACCAATTGGAGGGCAAGTCTGGTGCCANCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCTGTAGTTGAATCTGTGTGTCACAGTGTCGGTCACCGCTCNCGGTGTTTAN]

[-] EMBL BG101677             [CCCCAGCCANAGGCGCCCCCAATANAATANATCATTAGCNATCCTCTGATAAGCTTTATATGGGGAATAAAAAAGAAAAACAAGATCTTAGTTNAGNGTGGTNGCGGCCGAGGTACACTTTAAATCCTTTAACNAGGACCAATTGGAGGGCAAGTCTGGTGCCANCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCTGTAGTTGAATCTGTGTGTCACAGTGTCGGTCACCGCTCNCGGTGTTTAN]


>consensus_218#1 CCCCAGCCANAGGCGCCCCCAATANAATANATCATTAGCNATCCTCTGATAAGCTTTATA TGGGGAATAAAAAAGAAAAACAAGATCTTAGTTNAGNGTGGTNGCGGCCGAGGTACACTT TAAATCCTTTAACNAGGACCAATTGGAGGGCAAGTCTGGTGCCANCAGCCGCGGTAATTC CAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCTGTAGTTGAATCTGTG TGTCACAGTGTCGGTCACCGCTCNCGGTGTTTAN



consensusID : consensus_218#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 215
fasta sequence
                              [CCTANTAACCGCCNCCNNTGTGCTGGAANTCCNCTTTAGCGTGGTCGCGGCCGAGGTACACTTTAAATCCTTTAACGAGGACCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGAATCTGTGTGTCACAGTGTCGGTCACCGCTCGCGGTGTTTA]

[-] EMBL BG101660             [CCTANTAACCGCCNCCNNTGTGCTGGAANTCCNCTTTAGCGTGGTCGCGGCCGAGGTACACTTTAAATCCTTTAACGAGGACCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGAATCTGTGTGTCACAGTGTCGGTCACCGCTCGCGGTGTTTA]


>consensus_218#2 CCTANTAACCGCCNCCNNTGTGCTGGAANTCCNCTTTAGCGTGGTCGCGGCCGAGGTACA CTTTAAATCCTTTAACGAGGACCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAA TTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGAATCTG TGTGTCACAGTGTCGGTCACCGCTCGCGGTGTTTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_218#1      ------------------------------------------------------------
consensus_218#2      ------------------------------------------------------------
consensus_218#0      TCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTCAGTACATGCCGAATTAAGGTGA 60
                                                                                 

consensus_218#1      ------------------------------------------------------------
consensus_218#2      ------------------------------------------------------------
consensus_218#0      AACCGCGAATGGCTCATTAAATCAGTTATGGTTCATTAGATCGTGGACACATTTACTTGG 120
                                                                                 

consensus_218#1      ------------------------------------------------------------
consensus_218#2      ------------------------------------------------------------
consensus_218#0      ATAACTGTGGTAATTCTAGAGCTAATACATGCAAACAGAATTCCTCTCAGAGATGGGAGG 180
                                                                                 

consensus_218#1      ------------------------------------------------------------
consensus_218#2      ------------------------------------------------------------
consensus_218#0      AATGCTTTTATTAGATCAAAACCAATCGGTGGCGGACGGCTCGTCCGTTCGTCCATCGTT 240
                                                                                 

consensus_218#1      ------------------------------------------------------------
consensus_218#2      ------------------------------------------------------------
consensus_218#0      TGTTTTGGTGACTCTGAATAACTTTGTGCTGATCGCATGGTCATCTAGCACCGGCGACGC 300
                                                                                 

consensus_218#1      ------------------------------------------------------------
consensus_218#2      ------------------------------------------------------------
consensus_218#0      ATCTTTCAAATGTCTGCCTTATCAACTGTCGATGGTAGGTTCTGCGCCTACCATGGTTGT 360
                                                                                 

consensus_218#1      --------------------------------------------------------CCCC 4
consensus_218#2      ------------------------------------------------------------
consensus_218#0      AACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACAGCTACCAC 420
                                                                                 

consensus_218#1      AGCCANAGGCGCCCCCAATANAATANATCATTAGCNATCCTC-TGATAAGCTTTATATGG 63
consensus_218#2      ----------------------------------------CC-TANTAACCGCCNCCNNT 19
consensus_218#0      ATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGGCACGGGGAGGTAGTGACGA 480
                                                              *      *           

consensus_218#1      GGAATAAAAAAGAAAAACAAGATCTTAGTTNAGNGTGGTNG-CGGCCGAGGTACACTTTA 122
consensus_218#2      GTGCTGGAAN-------------TCCNCTTTAGCGTGGTCG-CGGCCGAGGTACACTTTA 65
consensus_218#0      AAAATAACGAT-----ACGGGACTCATCCGAGGCCCCGTAATCGGAATGAGTACACTTTA 535
                         *                           *    **   ***     **********

consensus_218#1      AATCCTTTAACNAGGACCAATTGGAGGGCAAGTCTGGTGCCANCAGCCGCGGTAATTCCA 182
consensus_218#2      AATCCTTTAACGAGGACCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCA 125
consensus_218#0      AATCCTTTAACGAGGACCAATTGGAGGGCAGGTCTGGTGCCAGCAGCCGCGGTAATTCCA 595
                     *********** ****************** *********** *****************

consensus_218#1      GCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCTGTAGTTGAATCTGTGTG 242
consensus_218#2      GCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTC-GTAGTTGAATCTGTGTG 184
consensus_218#0      GCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTC-GTAGTTGAATCTGTGTG 654
                     ****************************************** *****************

consensus_218#1      TCACAGTGTCGGT-CACCGCTCNCGGTGTTTAN----- 274
consensus_218#2      TCACAGTGTCGGT-CACCGCTCGCGGTGTTTA------ 215
consensus_218#0      TCACAGTGTCGGTTCACCGCTCGCGGTGTTTAACTGGC 692
                     ************* ******** *********      




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)