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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_218#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 692 fasta sequence
[TCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTCAGTACATGCCGAATTAAGGTGAAACCGCGAATGGCTCATTAAATCAGTTATGGTTCATTAGATCGTGGACACATTTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAACAGAATTCCTCTCAGAGATGGGAGGAATGCTTTTATTAGATCAAAACCAATCGGTGGCGGACGGCTCGTCCGTTCGTCCATCGTTTGTTTTGGTGACTCTGAATAACTTTGTGCTGATCGCATGGTCATCTAGCACCGGCGACGCATCTTTCAAATGTCTGCCTTATCAACTGTCGATGGTAGGTTCTGCGCCTACCATGGTTGTAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACAGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGGCACGGGGAGGTAGTGACGAAAAATAACGATACGGGACTCATCCGAGGCCCCGTAATCGGAATGAGTACACTTTAAATCCTTTAACGAGGACCAATTGGAGGGCAGGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGAATCTGTGTGTCACAGTGTCGGTTCACCGCTCGCGGTGTTTAACTGGC]
[+] EMBL BI513252 [TCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTCAGTACATGCCGAATTAAGGTGAAACCGCGAATGGCTCATTAAATCAGTTATGGTTCATTAGATCGTGGACACATTTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAACAGAATTCCTCTCAGAGATGGGAGGAATGCTTTTATTAGATCAAAACCAATCGGTGGCGGACGGCTCGTCCGTTCGTCCATCGTTTGTTTTGGTGACTCTGAATAACTTTGTGCTGATCGCATGGTCATCTAGCACCGGCGACGCATCTTTCAAATGTCTGCCTTATCAACTGTCGATGGTAGGTTCTGCGCCTACCATGGTTGTAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACAGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGGCACGGGGAGGTAGTGACGAAAAATAAC ]
[+] EMBL BI513307 [TCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTCAGTACATGCCGAATTAAGGTGAAACCGCGAATGGCTCATTAAATCAGTTATGGTTCATTAGATCGTGGACACATTTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAACAGAATTCCTCTCAGAGATGGGAGGAATGCTTTTATTAGATCAAAACCAATCGGTGGCGGACGGCTCGTCCGTTCGTCCATCGTTTGTTTTGGTGACTCTGAATAACTTTGTGCTGATCGCATGGTCATCTAGCACCGGCGACGCATCTTTCAAATGTCTGCCTTATCAACTGTCGATGGTAGGTTCTGCGCCTACCATGGTTGTAACGGGTAACG ]
[+] EMBL BI511340 [ GCGAATGGCTCATTAAATCAGTTATGGTTCATTAGATCGTGGACACATTTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAACAGAATTCCTCTCAGAGATGGGAGGAATGCTTTTATTAGATCAAAACCAATCGGTGGCGGACGGCTCGTCCGTTCGTCCATCGTTTGTTTTGGTGACTCTGAATAACTTTGTGCTGATCGCATGGTCATCTAGCACCGGCGACGCATCTTTCAAATGTCTGCCTTATCAACTGTCGATGGTAGGTTCTGCGCCTACCATGGTTGTAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGA ]
[+] EMBL BG101658 [ aGGGAGGAATGCTTTTATTAGATCAAAACCAATCGGTGGCGGACGGCTCGTCCGTTCGTCCATCGTTTGTTTTGGTGACTCTGAATAACTTTGTGCTGATCGCATGGTCATCTAGCACCGGCGACGCATCTTTCAAATGTCTGCCTTATCAACTGTCGATGGTAGGTTCTGCGCCTACCATGGTTGTAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACAGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGGCACGGGGAGGTAGTGACGAAAAATAACGATACGGGACTCATCCGAGGCCCCGTAATCGGAATGAGTACACTTTAAATCCTTTAACGAGGACCAATTGGAGGGCAGGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGAATCTGTGTGTCACAGTGTCGGTTCACCGCTCGCGGTGTTTAACTGGC]
consensusID : consensus_218#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence
[CCCCAGCCANAGGCGCCCCCAATANAATANATCATTAGCNATCCTCTGATAAGCTTTATATGGGGAATAAAAAAGAAAAACAAGATCTTAGTTNAGNGTGGTNGCGGCCGAGGTACACTTTAAATCCTTTAACNAGGACCAATTGGAGGGCAAGTCTGGTGCCANCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCTGTAGTTGAATCTGTGTGTCACAGTGTCGGTCACCGCTCNCGGTGTTTAN]
[-] EMBL BG101677 [CCCCAGCCANAGGCGCCCCCAATANAATANATCATTAGCNATCCTCTGATAAGCTTTATATGGGGAATAAAAAAGAAAAACAAGATCTTAGTTNAGNGTGGTNGCGGCCGAGGTACACTTTAAATCCTTTAACNAGGACCAATTGGAGGGCAAGTCTGGTGCCANCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCTGTAGTTGAATCTGTGTGTCACAGTGTCGGTCACCGCTCNCGGTGTTTAN]
consensusID : consensus_218#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 215 fasta sequence
[CCTANTAACCGCCNCCNNTGTGCTGGAANTCCNCTTTAGCGTGGTCGCGGCCGAGGTACACTTTAAATCCTTTAACGAGGACCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGAATCTGTGTGTCACAGTGTCGGTCACCGCTCGCGGTGTTTA]
[-] EMBL BG101660 [CCTANTAACCGCCNCCNNTGTGCTGGAANTCCNCTTTAGCGTGGTCGCGGCCGAGGTACACTTTAAATCCTTTAACGAGGACCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGAATCTGTGTGTCACAGTGTCGGTCACCGCTCGCGGTGTTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_218#1 ------------------------------------------------------------
consensus_218#2 ------------------------------------------------------------
consensus_218#0 TCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTCAGTACATGCCGAATTAAGGTGA 60
consensus_218#1 ------------------------------------------------------------
consensus_218#2 ------------------------------------------------------------
consensus_218#0 AACCGCGAATGGCTCATTAAATCAGTTATGGTTCATTAGATCGTGGACACATTTACTTGG 120
consensus_218#1 ------------------------------------------------------------
consensus_218#2 ------------------------------------------------------------
consensus_218#0 ATAACTGTGGTAATTCTAGAGCTAATACATGCAAACAGAATTCCTCTCAGAGATGGGAGG 180
consensus_218#1 ------------------------------------------------------------
consensus_218#2 ------------------------------------------------------------
consensus_218#0 AATGCTTTTATTAGATCAAAACCAATCGGTGGCGGACGGCTCGTCCGTTCGTCCATCGTT 240
consensus_218#1 ------------------------------------------------------------
consensus_218#2 ------------------------------------------------------------
consensus_218#0 TGTTTTGGTGACTCTGAATAACTTTGTGCTGATCGCATGGTCATCTAGCACCGGCGACGC 300
consensus_218#1 ------------------------------------------------------------
consensus_218#2 ------------------------------------------------------------
consensus_218#0 ATCTTTCAAATGTCTGCCTTATCAACTGTCGATGGTAGGTTCTGCGCCTACCATGGTTGT 360
consensus_218#1 --------------------------------------------------------CCCC 4
consensus_218#2 ------------------------------------------------------------
consensus_218#0 AACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACAGCTACCAC 420
consensus_218#1 AGCCANAGGCGCCCCCAATANAATANATCATTAGCNATCCTC-TGATAAGCTTTATATGG 63
consensus_218#2 ----------------------------------------CC-TANTAACCGCCNCCNNT 19
consensus_218#0 ATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGGCACGGGGAGGTAGTGACGA 480
* *
consensus_218#1 GGAATAAAAAAGAAAAACAAGATCTTAGTTNAGNGTGGTNG-CGGCCGAGGTACACTTTA 122
consensus_218#2 GTGCTGGAAN-------------TCCNCTTTAGCGTGGTCG-CGGCCGAGGTACACTTTA 65
consensus_218#0 AAAATAACGAT-----ACGGGACTCATCCGAGGCCCCGTAATCGGAATGAGTACACTTTA 535
* * ** *** **********
consensus_218#1 AATCCTTTAACNAGGACCAATTGGAGGGCAAGTCTGGTGCCANCAGCCGCGGTAATTCCA 182
consensus_218#2 AATCCTTTAACGAGGACCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCA 125
consensus_218#0 AATCCTTTAACGAGGACCAATTGGAGGGCAGGTCTGGTGCCAGCAGCCGCGGTAATTCCA 595
*********** ****************** *********** *****************
consensus_218#1 GCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCTGTAGTTGAATCTGTGTG 242
consensus_218#2 GCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTC-GTAGTTGAATCTGTGTG 184
consensus_218#0 GCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTC-GTAGTTGAATCTGTGTG 654
****************************************** *****************
consensus_218#1 TCACAGTGTCGGT-CACCGCTCNCGGTGTTTAN----- 274
consensus_218#2 TCACAGTGTCGGT-CACCGCTCGCGGTGTTTA------ 215
consensus_218#0 TCACAGTGTCGGTTCACCGCTCGCGGTGTTTAACTGGC 692
************* ******** *********
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |