cluster # 219

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 219 cluster # 219 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_219#0 length = 816 sequences # 4

consensus_219#1 length = 568 sequences # 1
consensus_219#2 length = 535 sequences # 1

consensusID : consensus_219#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 816
fasta sequence

                              [TGAAAGGAGCACTCCCCCTTTTACACACACGCGCGTGGACCCCTCTCGCCGTTGATTTCGATTTCCAACGCGCTTCGCGCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTCCTGTATGCGGTCGATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGTGAACCGCATCCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAAGAATGGAGAGAGAGAGAGAGAGAGAAGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGATACACGCGTACACATCACATATACACAAACTATATATATATATATATATATATATAAAACACAGACGTAAACATACATACATACATTCGAACGAAGGAAAAACTACATGCAATTCTACGATCACTGCCAAGGGCGTTAACCGTTGACGTCGATTTCTCGTTGTTTAAACGTGTCGTAGTCGTCGTTTTTCTCGAATGCAAAATTAAAATGTAATTATGAAAAAACGATCGGGAAAAAGAAGAAGGAAGAGAGGAGTGTGAAAGAGTAAAAGGGGAGATTACACTACTACTATTACTACTACTACTACTACTACTACTACTACCACGCGCGTTATTTGGCGACATCTAGAGATATTATAAGCATTAACAAAAAAATGAGATAGAGAAGAAAAATGCAAAAAATGTATGTGTATATACATCATACATATCACATCTATATATATATATATATATACACACACATATGTGTATATAGATGTGCGTTCGCTCGAGCGAGTTCGATATACTCGAGCGTGCG]

[+] EMBL BI508956             [TGAAAGGAGCACTTTCCCTTTTACACACACGCGCGTGGACCCCTCTCGCCGTTGATTTCGATTTCCAACGCGCTTCGCGCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTCCTGTATGCGGTCGATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGTGAACCGCATCCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAAGAATGGAGAGAGAGAGAGAGAGAGAAGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGATACACGCGTACACATCACATATACACAAACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BI502713             [             CCCCCTTTTACACACACGCGCGTGGACCCCTCTCGCCGTTGATTTCGATTTCCAACGCGCTTCGCGCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTCCTGTATGCGGTCGATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGTGAACCGCATCCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAAGAATGGAGAGAGAGAGAGAGAGAGAAGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGATACACGCGTACACATCACATATACACAAACTATATATATATATATATATATATATAAAACACAGACGTAAACATACATACATACATTCGAACGAAGGAAAAACTACATGCAATTCTACGATCACTGCCAAGGGCGTTAACCGTTGACGTCGATTTCTCGTTGTTTAAACGTGTCGTAGTCGTCGTTTTTCTCGAATGCAAAATTAAAATGTAATTATGAAAAA                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BI516300             [                                                                                                                                                                                                                                                                                       GTACGCGCGGGGAAGGGAGGATACACGCGTACACATCACATATACACAAACTATATATATATATATATATATATATAAAACACAGACGTAAACATACATACATACATTCGAACGAAGGAAAAACTACATGCAATTCTACGATCACTGCCAAGGGCGTTAACCGTTGACGTCGATTTCTCGTTGTTTAAACGTGTCGTAGTCGTCGTTTTTCTCGAATGCAAAATTAAAATGTAATTATGAAAAAACGATCGGGAAAAAGAAGAAGGAAGAGAGGAGTGTGAAAGAGTAAAAGGGGAGATTACACTACTACTATTACTACTACTACTACTACTACTACTACTACCACGCGCGTTATTTGGCGACATCTAGAGATATTATAAGCATTAACAAAAAAATGAGATAGAGAAGAAAAATGCAAAAAATGTATGTGTATATACATCATACATATCACATCTATATATATATATATATATACACACACATATGTGTATATAGATGTGCGTTCGCTCGAGCGAGTTCGATATACTCGAGCGTGCG]
[+] EMBL BI516361             [                                                                                                                                                                                                                                                                                       GTACGCGCGGGGAAGGGAGGATACACGCGTACACATCACATATACACAAACTATATATATATATATATATATATATAAAACACAGACGTAAACATACATACATACATTCGAACGAAGGAAAAACTACATGCAATTCTACGATCACTGCCAAGGGCGTTAACCGTTGACGTCGATTTCTCGTTGTTTAAACGTGTCGTAGTCGTCGTTTTTCTCGAATGCAAAATTAAAATGTAATTATGAAAAAACGATCGGGAAAAAGAAGAAGGAAGAGAGGAGTGTGAAAGAGTAAAAGGGGAGATTACACTACTACTATTACTACTACTACTACTACTACTACTACTACCACGCGCGTTATTTGGCGACATCTAGAGATATTATAAGCATTAACAAAAAAATGAGATAGAGAAGAAAAATGCAAAAAATGTATGTGTATATACATCATACATATCACATCTATATATATATATATATATACACACACATATGTGTATATAGATGTGCGTTCGCTCGAGCGAGTTCGATA              ]




>consensus_219#0
TGAAAGGAGCACTCCCCCTTTTACACACACGCGCGTGGACCCCTCTCGCCGTTGATTTCG
ATTTCCAACGCGCTTCGCGCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTC
CTGTATGCGGTCGATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGT
GAACCGCATCCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAA
GAATGGAGAGAGAGAGAGAGAGAGAAGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGA
TACACGCGTACACATCACATATACACAAACTATATATATATATATATATATATATAAAAC
ACAGACGTAAACATACATACATACATTCGAACGAAGGAAAAACTACATGCAATTCTACGA
TCACTGCCAAGGGCGTTAACCGTTGACGTCGATTTCTCGTTGTTTAAACGTGTCGTAGTC
GTCGTTTTTCTCGAATGCAAAATTAAAATGTAATTATGAAAAAACGATCGGGAAAAAGAA
GAAGGAAGAGAGGAGTGTGAAAGAGTAAAAGGGGAGATTACACTACTACTATTACTACTA
CTACTACTACTACTACTACTACCACGCGCGTTATTTGGCGACATCTAGAGATATTATAAG
CATTAACAAAAAAATGAGATAGAGAAGAAAAATGCAAAAAATGTATGTGTATATACATCA
TACATATCACATCTATATATATATATATATATACACACACATATGTGTATATAGATGTGC
GTTCGCTCGAGCGAGTTCGATATACTCGAGCGTGCG

consensusID : consensus_219#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence

                              [TTGGAGAGAGAAAAAAAAAAAAGAAAAATGTCACGGACCGTCGACGGCAGGTCGTCATCGACACACTTTTTGTCTCGTAGAACCGTTTAGAACCGCCCTTGAAAGGAGCACTTTCCCCCTTTTACACACACGCGCGTGGACCCCTTCTCGCCGTTGATTTCGATTTCCAACGCGTTTCGCGCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTCCTGTATGCGGCCCCTCGAGCCGATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGTGAACCGCATCCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAACAGTGGAGAGAGAGAGAGAGAGAGAGAAGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGATACACGCGTACACATCACATATACACAAACTATATATATATAAAACACAGACGTAAACATACATACATACATTCGAACGAAGGAAAAACTACATGCAATTCTACGATCACTGCCAAGGGCGTTAACCGTTGACGTCGATTTCTCGTTGTTTAAAC]

[+] EMBL BI508683             [TTGGAGAGAGAAAAAAAAAAAAGAAAAATGTCACGGACCGTCGACGGCAGGTCGTCATCGACACACTTTTTGTCTCGTAGAACCGTTTAGAACCGCCCTTGAAAGGAGCACTTTCCCCCTTTTACACACACGCGCGTGGACCCCTTCTCGCCGTTGATTTCGATTTCCAACGCGTTTCGCGCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTCCTGTATGCGGCCCCTCGAGCCGATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGTGAACCGCATCCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAACAGTGGAGAGAGAGAGAGAGAGAGAGAAGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGATACACGCGTACACATCACATATACACAAACTATATATATATAAAACACAGACGTAAACATACATACATACATTCGAACGAAGGAAAAACTACATGCAATTCTACGATCACTGCCAAGGGCGTTAACCGTTGACGTCGATTTCTCGTTGTTTAAAC]




>consensus_219#1
TTGGAGAGAGAAAAAAAAAAAAGAAAAATGTCACGGACCGTCGACGGCAGGTCGTCATCG
ACACACTTTTTGTCTCGTAGAACCGTTTAGAACCGCCCTTGAAAGGAGCACTTTCCCCCT
TTTACACACACGCGCGTGGACCCCTTCTCGCCGTTGATTTCGATTTCCAACGCGTTTCGC
GCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTCCTGTATGCGGCCCCTCGA
GCCGATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGTGAACCGCAT
CCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAACAGTGGAGA
GAGAGAGAGAGAGAGAGAAGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGATACACGC
GTACACATCACATATACACAAACTATATATATATAAAACACAGACGTAAACATACATACA
TACATTCGAACGAAGGAAAAACTACATGCAATTCTACGATCACTGCCAAGGGCGTTAACC
GTTGACGTCGATTTCTCGTTGTTTAAAC

consensusID : consensus_219#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 535
fasta sequence

                              [ACTTTCCCCCTTTTACACACACGCGCGTGGACCCCTCTCGCCGTTGATTTCGATTTCCAACGCGCTTCGCGCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTCCTGTATGCGGTCGATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGTGAACCGCATCCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAAGAATGGAGAGAGAGAGAGAGAGAGAAGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGATACACGCGTACACATCACATATACACAAACTATATATATATATATATATATATATAAAACACAGACGTAAACATACATACATACATTCGAACGAAGGATTAGATTAATTTTCTTCCGAATGTTTTCGATTCGACGTCAAAATCGTGCAATAAAAAAGAGGAGGGAAGACAGTCTGTGTATATGAAAGAACCGTAATTCTCAAAAGAATAATATTGCCTGTATATCTTGGAGAGAGAAAAAAAA]

[+] EMBL BI505940             [ACTTTCCCCCTTTTACACACACGCGCGTGGACCCCTCTCGCCGTTGATTTCGATTTCCAACGCGCTTCGCGCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTCCTGTATGCGGTCGATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGTGAACCGCATCCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAAGAATGGAGAGAGAGAGAGAGAGAGAAGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGATACACGCGTACACATCACATATACACAAACTATATATATATATATATATATATATAAAACACAGACGTAAACATACATACATACATTCGAACGAAGGATTAGATTAATTTTCTTCCGAATGTTTTCGATTCGACGTCAAAATCGTGCAATAAAAAAGAGGAGGGAAGACAGTCTGTGTATATGAAAGAACCGTAATTCTCAAAAGAATAATATTGCCTGTATATCTTGGAGAGAGAAAAAAAA]




>consensus_219#2
ACTTTCCCCCTTTTACACACACGCGCGTGGACCCCTCTCGCCGTTGATTTCGATTTCCAA
CGCGCTTCGCGCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTCCTGTATGC
GGTCGATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGTGAACCGCA
TCCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAAGAATGGAG
AGAGAGAGAGAGAGAGAAGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGATACACGCG
TACACATCACATATACACAAACTATATATATATATATATATATATATAAAACACAGACGT
AAACATACATACATACATTCGAACGAAGGATTAGATTAATTTTCTTCCGAATGTTTTCGA
TTCGACGTCAAAATCGTGCAATAAAAAAGAGGAGGGAAGACAGTCTGTGTATATGAAAGA
ACCGTAATTCTCAAAAGAATAATATTGCCTGTATATCTTGGAGAGAGAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_219#0      ------------------------------------------------------------
consensus_219#1      TTGGAGAGAGAAAAAAAAAAAAGAAAAATGTCACGGACCGTCGACGGCAGGTCGTCATCG 60
consensus_219#2      ------------------------------------------------------------
                                                                                 

consensus_219#0      ---------------------------------------TGAAAGGAGCACT--CCCCCT 19
consensus_219#1      ACACACTTTTTGTCTCGTAGAACCGTTTAGAACCGCCCTTGAAAGGAGCACTTTCCCCCT 120
consensus_219#2      -------------------------------------------------ACTTTCCCCCT 11
                                                                      ***  ******

consensus_219#0      TTTACACACACGCGCGTGGACCCCT-CTCGCCGTTGATTTCGATTTCCAACGCGCTTCGC 78
consensus_219#1      TTTACACACACGCGCGTGGACCCCTTCTCGCCGTTGATTTCGATTTCCAACGCGTTTCGC 180
consensus_219#2      TTTACACACACGCGCGTGGACCCCT-CTCGCCGTTGATTTCGATTTCCAACGCGCTTCGC 70
                     ************************* **************************** *****

consensus_219#0      GCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTCCTGTATGCGGTC------ 132
consensus_219#1      GCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTCCTGTATGCGGCCCCTCGA 240
consensus_219#2      GCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTCCTGTATGCGGTC------ 124
                     **************************************************** *      

consensus_219#0      ---GATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGTGAACCGCAT 189
consensus_219#1      GCCGATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGTGAACCGCAT 300
consensus_219#2      ---GATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGTGAACCGCAT 181
                        *********************************************************

consensus_219#0      CCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAAGAATGGAGA 249
consensus_219#1      CCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAACAGTGGAGA 360
consensus_219#2      CCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAAGAATGGAGA 241
                     *************************************************** * ******

consensus_219#0      GAGAGAGAGAGAGAGA--AGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGATACACGC 307
consensus_219#1      GAGAGAGAGAGAGAGAGAAGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGATACACGC 420
consensus_219#2      GAGAGAGAGAGAGAGA--AGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGATACACGC 299
                     ****************  ******************************************

consensus_219#0      GTACACATCACATATACACAAACTATATATATATATATATATATATATAAAACACAGACG 367
consensus_219#1      GTACACATCACATATACACAAACTATATATATATA--------------AAACACAGACG 466
consensus_219#2      GTACACATCACATATACACAAACTATATATATATATATATATATATATAAAACACAGACG 359
                     ***********************************              ***********

consensus_219#0      TAAACATACATACATACATTCGAACGAAGGAAAAACTACATGCAATTCTACGATCACTGC 427
consensus_219#1      TAAACATACATACATACATTCGAACGAAGGAAAAACTACATGCAATTCTACGATCACTGC 526
consensus_219#2      TAAACATACATACATACATTCGAACGAAGG----ATTAGAT-TAATTTT-------CTTC 407
                     ******************************    * ** **  **** *       ** *

consensus_219#0      CAAGGGCGTTAACCGTTGACGTCGATTTCTCGTTGTTTAAACGTGTCGTAGTCGTCGTTT 487
consensus_219#1      CAAGGGCGTTAACCGTTGACGTCGATTTCTCGTTGTTTAAAC------------------ 568
consensus_219#2      CGAATGTTTTCGAT-TCGACGTCAAAATCGTGCAATAAAAAAGAGGAGGGAAGACAGTCT 466
                     * *  *  **     * ****** *  **  *   *  ***                   

consensus_219#0      TTCTCGAATGCAAAATTAAAATGTAATTATGAAAAAACGATCGGGAAAAAGAAGAAGGAA 547
consensus_219#1      ------------------------------------------------------------
consensus_219#2      GTGTATATGAAAGAACCGTAATTCTCAAAAGAATAATATTGCCTGTATATCTTGGAGAGA 526
                                                                                 

consensus_219#0      GAGAGGAGTGTGAAAGAGTAAAAGGGGAGATTACACTACTACTATTACTACTACTACTAC 607
consensus_219#1      ------------------------------------------------------------
consensus_219#2      GAAAAAAAA--------------------------------------------------- 535
                                                                                 

consensus_219#0      TACTACTACTACTACCACGCGCGTTATTTGGCGACATCTAGAGATATTATAAGCATTAAC 667
consensus_219#1      ------------------------------------------------------------
consensus_219#2      ------------------------------------------------------------
                                                                                 

consensus_219#0      AAAAAAATGAGATAGAGAAGAAAAATGCAAAAAATGTATGTGTATATACATCATACATAT 727
consensus_219#1      ------------------------------------------------------------
consensus_219#2      ------------------------------------------------------------
                                                                                 

consensus_219#0      CACATCTATATATATATATATATATACACACACATATGTGTATATAGATGTGCGTTCGCT 787
consensus_219#1      ------------------------------------------------------------
consensus_219#2      ------------------------------------------------------------
                                                                                 

consensus_219#0      CGAGCGAGTTCGATATACTCGAGCGTGCG 816
consensus_219#1      -----------------------------
consensus_219#2      -----------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)