These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2195#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence [GTTTATTAATATGAAGGTAAATTGTTTTTTTCAATCTCTAGATTTGTATCATTTGGTTCTTTATCTTGTTTACTTTCTTCTTCAAGGAATTTTAAGCACTTTAATTGTTTCTATAATCCCCTTCATATACTAAACTTGTTACAGGATTAATTAGCATCTTATATGCTAATTATAACGAAGATATTACCAATAAGGTAATTACAAATCCAGCAGTCTTTCTTCCAAAGCATAAGAATAAGACTTTATGATGAAGTGTTTACATCATTTGTTAAGGAATTGAGAAGTGAAACTTTGTTATCTTCCAAATCGAGAGGATCCGAGGTATAAAGACTGGTCGTAGCTGTATCACCTGCCGTGCTAGTTACAGGAGATGTGGCATTCAAGAAAATGTCATCGTCGAAATCTAATAAATTTGAAGTAGGATTATATGCCATAAGTTCACCACCACTTGTTCCACTAATATTTTCTCCAACATTAGCATGATCATCTTCCTCTTTCTCAGAATGTGGATTTAATTCTGGATTAACTGGCATACCAAACGACATTGGATCATCCGCTCCAAATAACTGCAAATGCATATTAATTAAAAAAAAAAA] [+] EMBL BI503961 [GTTTATTAATATGAAGGTAAATTGTTTTTTTCAATCTCTAGATTTGTATCATTTGGTTCTTTATCTTGTTTACTTTCTTCTTCAAGGAATTTTAAGCACTTTAATTGTTTCTATAATCCCCTTCATATACTAAACTTGTTACAGGATTAATTAGCATCTTATATGCTAATTATAACGAAGATATTACCAATAAGGTAATTACAAATCCAGCAGTCTTTCTTCCAAAGCATAAGAATAAGACTTTATGATGAAGTGTTTACATCATTTGTTAAGGAATTGAGAAGTGAAACTTTGTTATCTTCCAAATCGAGAGGATCCGAGGTATAAAGACTGGTCGTAGCTGTATCACCTGCCGTGCTAGTTACAGGAGATGTGGCATTCAAGAAAATGTCATCGTCGAAATCTAATAAATTTGAAGTAGGATTATATGCCATAAGTTCACCACCACTTGTTCCACTAATATTTTCTCCAACATTAGCATGATCATCTTCCTCTTTCTCAGAATGTGGATTTAATTCTGGATTAACTGGCATACCAAACGACATTGGATCATCCGCTCCAAATAACTGCAAATGCATATTAATTAAAAAAAAAAA] consensusID : consensus_2195#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence [AAGCACTTTAATTGTTTCTATAATCCCCTTCATATACTAAACTTGTTACAGGATTAATTAGCATCTTATATGCTAATTATAACGAAGATATTACCAATAAGGTAATTACAAATCCAGCAGTCTTTCTTCCAAAGCATAAGAATAAGACTTTATGATGAAGTGTTTACATCATTTGTTAAGGAATTGAGAAGTGAAACTTTGTTATCTTCCAAATCGAGAGGATCCGAGGTATAAAGACTGGTCGTAGCTGTATCACCTGCCGTGCTAGTTACAGGAGATGTGGCATTCAAGAAAATGTCATCGTCGAAATCTAATAAATTTGAAGTAGGATTATATGCCATAAGTTCACCACCACTTGTTCCACTAATATTTTCTGCAACATTAGCATGATCATCTTCCTCTTTCTCAGAATGTGGATTTAATTCTGGATTAACTGGCATACCAAACGACATTGGATCATCCGCTCCAAATAAACCAAGAAGTGTATTTGCATCAATACTGTAACCCTCGCTACGTAAGATTTCACGAAGATTGTCCAATTCCGTTTGCATTGTTTC] [-] EMBL BI503876 [AAGCACTTTAATTGTTTCTATAATCCCCTTCATATACTAAACTTGTTACAGGATTAATTAGCATCTTATATGCTAATTATAACGAAGATATTACCAATAAGGTAATTACAAATCCAGCAGTCTTTCTTCCAAAGCATAAGAATAAGACTTTATGATGAAGTGTTTACATCATTTGTTAAGGAATTGAGAAGTGAAACTTTGTTATCTTCCAAATCGAGAGGATCCGAGGTATAAAGACTGGTCGTAGCTGTATCACCTGCCGTGCTAGTTACAGGAGATGTGGCATTCAAGAAAATGTCATCGTCGAAATCTAATAAATTTGAAGTAGGATTATATGCCATAAGTTCACCACCACTTGTTCCACTAATATTTTCTGCAACATTAGCATGATCATCTTCCTCTTTCTCAGAATGTGGATTTAATTCTGGATTAACTGGCATACCAAACGACATTGGATCATCCGCTCCAAATAAACCAAGAAGTGTATTTGCATCAATACTGTAACCCTCGCTACGTAAGATTTCACGAAGATTGTCCAATTCCGTTTGCATTGTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2195#0 GTTTATTAATATGAAGGTAAATTGTTTTTTTCAATCTCTAGATTTGTATCATTTGGTTCT 60 consensus_2195#1 ------------------------------------------------------------ consensus_2195#0 TTATCTTGTTTACTTTCTTCTTCAAGGAATTTTAAGCACTTTAATTGTTTCTATAATCCC 120 consensus_2195#1 ---------------------------------AAGCACTTTAATTGTTTCTATAATCCC 27 *************************** consensus_2195#0 CTTCATATACTAAACTTGTTACAGGATTAATTAGCATCTTATATGCTAATTATAACGAAG 180 consensus_2195#1 CTTCATATACTAAACTTGTTACAGGATTAATTAGCATCTTATATGCTAATTATAACGAAG 87 ************************************************************ consensus_2195#0 ATATTACCAATAAGGTAATTACAAATCCAGCAGTCTTTCTTCCAAAGCATAAGAATAAGA 240 consensus_2195#1 ATATTACCAATAAGGTAATTACAAATCCAGCAGTCTTTCTTCCAAAGCATAAGAATAAGA 147 ************************************************************ consensus_2195#0 CTTTATGATGAAGTGTTTACATCATTTGTTAAGGAATTGAGAAGTGAAACTTTGTTATCT 300 consensus_2195#1 CTTTATGATGAAGTGTTTACATCATTTGTTAAGGAATTGAGAAGTGAAACTTTGTTATCT 207 ************************************************************ consensus_2195#0 TCCAAATCGAGAGGATCCGAGGTATAAAGACTGGTCGTAGCTGTATCACCTGCCGTGCTA 360 consensus_2195#1 TCCAAATCGAGAGGATCCGAGGTATAAAGACTGGTCGTAGCTGTATCACCTGCCGTGCTA 267 ************************************************************ consensus_2195#0 GTTACAGGAGATGTGGCATTCAAGAAAATGTCATCGTCGAAATCTAATAAATTTGAAGTA 420 consensus_2195#1 GTTACAGGAGATGTGGCATTCAAGAAAATGTCATCGTCGAAATCTAATAAATTTGAAGTA 327 ************************************************************ consensus_2195#0 GGATTATATGCCATAAGTTCACCACCACTTGTTCCACTAATATTTTCTCCAACATTAGCA 480 consensus_2195#1 GGATTATATGCCATAAGTTCACCACCACTTGTTCCACTAATATTTTCTGCAACATTAGCA 387 ************************************************ *********** consensus_2195#0 TGATCATCTTCCTCTTTCTCAGAATGTGGATTTAATTCTGGATTAACTGGCATACCAAAC 540 consensus_2195#1 TGATCATCTTCCTCTTTCTCAGAATGTGGATTTAATTCTGGATTAACTGGCATACCAAAC 447 ************************************************************ consensus_2195#0 GACATTGGATCATCCGCTCCAAATAA--CTGCAAATGCATATTAATTAAAAAAAAAAA-- 596 consensus_2195#1 GACATTGGATCATCCGCTCCAAATAAACCAAGAAGTGTATTTGCATCAATACTGTAACCC 507 ************************** * ** ** ** * ** ** * ** consensus_2195#0 -------------------------------------------------- consensus_2195#1 TCGCTACGTAAGATTTCACGAAGATTGTCCAATTCCGTTTGCATTGTTTC 557 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |