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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2218#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence
[TTTTTTTTTTTTTTCCTTCTTTCCCTCTCTTTTCCCTTCTTTCCTTGTTCTATTATCCATTATTTTGACTAAATCAATCGGAAAGATAAACACGTGTGCAAGTTTCTTCTCCCATTCCGCTTAATTAACATCAAAACGAAGTATATCTGACGTTGAAAAGTACCGGGAAACGATGTAAGGATAANNNNNNNNNNTCAAGGTTAGGATCGAAATCGAAGTATTGTATTCGAACGATGAATGCAATTTGCAAAAAATTGTACAACTGCGATAGGCTTCTGAGCTAATTAAACCAAAAAGAAGATGTAATCTCACGATTCTTCACCACCTTCCTATGCATTTTTGGATTATTTTTCAACGAGACCAACCACGTTGATGCATTAAGATAAATTTATGTACGAAGTCATTTATATTTTTTTTTTAATAAATTTTTATTCAATATTCATCAAGAGCAACTTTTTAATTAGTNCAAAGAATAAAAGTTATATTATT]
[+] EMBL BI504456 [TTTTTTTTTTTTTTCCTTCTTTCCCTCTCTTTTCCCTTCTTTCCTTGTTCTATTATCCATTATTTTGACTAAATCAATCGGAAAGATAAACACGTGTGCAAGTTTCTTCTCCCATTCCGCTTAATTAACATCAAAACGAAGTATATCTGACGTTGAAAAGTACCGGGAAACGATGTAAGGATAANNNNNNNNNNTCAAGGTTAGGATCGAAATCGAAGTATTGTATTCGAACGATGAATGCAATTTGCAAAAAATTGTACAACTGCGATAGGCTTCTGAGCTAATTAAACCAAAAAGAAGATGTAATCTCACGATTCTTCACCACCTTCCTATGCATTTTTGGATTATTTTTCAACGAGACCAACCACGTTGATGCATTAAGATAAATTTATGTACGAAGTCATTTATATTTTTTTTTTAATAAATTTTTATTCAATATTCATCAAGAGCAACTTTTTAATTAGTNCAAAGAATAAAAGTTATATTATT]
consensusID : consensus_2218#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence
[GAAGTATATCTGACGTTGAAAAGTACCGGGAAACGATGTAAGGATAATCACCCAATTTCAAGGTTAGGATCGAAATCNNAGTATTGTATTNNNACGATGAATGCAATTTGCAAAAAAATTGTACAACTGCGATAGGCTTCTGAGCTAATTAAACCAAAAAGAAGNTGTAATCTCACGATTCTTCACCACCTTCCTATGCATTTTTGGATTATTTTTCAACGNNNCCAACCACGTTGATGCATTAAGATAAATTTATGTACGAAGTCATTTATATTTTTTTTTTAATAAATTTNNNTTTAACATTCATCAAGAGCAACTTTTTAATTAATGCAATGAATAAAAGTTATATTATTATTAAAATGAATGATTGGTAAAATCTGGATATAAATCTATAGTTATATTATTTGCTTGTAAAAACTATTAAAATAAATGCAAGTGA]
[+] EMBL BI503817 [GAAGTATATCTGACGTTGAAAAGTACCGGGAAACGATGTAAGGATAATCACCCAATTTCAAGGTTAGGATCGAAATCNNAGTATTGTATTNNNACGATGAATGCAATTTGCAAAAAAATTGTACAACTGCGATAGGCTTCTGAGCTAATTAAACCAAAAAGAAGNTGTAATCTCACGATTCTTCACCACCTTCCTATGCATTTTTGGATTATTTTTCAACGNNNCCAACCACGTTGATGCATTAAGATAAATTTATGTACGAAGTCATTTATATTTTTTTTTTAATAAATTTNNNTTTAACATTCATCAAGAGCAACTTTTTAATTAATGCAATGAATAAAAGTTATATTATTATTAAAATGAATGATTGGTAAAATCTGGATATAAATCTATAGTTATATTATTTGCTTGTAAAAACTATTAAAATAAATGCAAGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2218#0 TTTTTTTTTTTTTTCCTTCTTTCCCTCTCTTTTCCCTTCTTTCCTTGTTCTATTATCCAT 60
consensus_2218#1 ------------------------------------------------------------
consensus_2218#0 TATTTTGACTAAATCAATCGGAAAGATAAACACGTGTGCAAGTTTCTTCTCCCATTCCGC 120
consensus_2218#1 ------------------------------------------------------------
consensus_2218#0 TTAATTAACATCAAAACGAAGTATATCTGACGTTGAAAAGTACCGGGAAACGATGTAAGG 180
consensus_2218#1 -----------------GAAGTATATCTGACGTTGAAAAGTACCGGGAAACGATGTAAGG 43
*******************************************
consensus_2218#0 ATAANNNNNNNNNNTCAAGGTTAGGATCGAAATCGAAGTATTGTATTCGAACGATGAATG 240
consensus_2218#1 ATAATCACCCAATTTCAAGGTTAGGATCGAAATCNNAGTATTGTATTNNNACGATGAATG 103
**** ******************** *********** **********
consensus_2218#0 CAATTTGCAAAAAA-TTGTACAACTGCGATAGGCTTCTGAGCTAATTAAACCAAAAAGAA 299
consensus_2218#1 CAATTTGCAAAAAAATTGTACAACTGCGATAGGCTTCTGAGCTAATTAAACCAAAAAGAA 163
************** *********************************************
consensus_2218#0 GATGTAATCTCACGATTCTTCACCACCTTCCTATGCATTTTTGGATTATTTTTCAACGAG 359
consensus_2218#1 GNTGTAATCTCACGATTCTTCACCACCTTCCTATGCATTTTTGGATTATTTTTCAACGNN 223
* ********************************************************
consensus_2218#0 ACCAACCACGTTGATGCATTAAGATAAATTTATGTACGAAGTCATTTATATTTTTTTTTT 419
consensus_2218#1 NCCAACCACGTTGATGCATTAAGATAAATTTATGTACGAAGTCATTTATATTTTTTTTTT 283
***********************************************************
consensus_2218#0 AATAAATTTTTATTCAATATTCATCAAGAGCAACTTTTTAATTAGTNCAAAGAATAAAAG 479
consensus_2218#1 AATAAATTTNNNTTTAACATTCATCAAGAGCAACTTTTTAATTAATGCAATGAATAAAAG 343
********* ** ** ************************** * *** *********
consensus_2218#0 TTATATTATT-------------------------------------------------- 489
consensus_2218#1 TTATATTATTATTAAAATGAATGATTGGTAAAATCTGGATATAAATCTATAGTTATATTA 403
**********
consensus_2218#0 ------------------------------------
consensus_2218#1 TTTGCTTGTAAAAACTATTAAAATAAATGCAAGTGA 439
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |