These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2223#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [ATAGAAGTTTGAAATCATTGATCTGTATGCAACTGTACATCGATGGCAGCAAATGCATTGTTGAATAGCTATAAAGGTGAACAGTGGGGTTAGACTCGGGGGAAGGAGGCAAAGGAAAGGTAAAGGTTAGAAGAGGTTATGAACTTTAACCCACGGATAGTTGACGAAGTTTAGTTGCTGCTATGAATTGTCCAAATGATGCATAGTCAAATTTGTCATCGTTATTAATAATATAGGTAGAAATGGACAGAGATCATAGGGAACAACACGATCATGATAATATAAATGAAAACGAGGAAGAACAAAAAGTAGGAATGGATTTTCGTAATTTATCTCGTCACCATGGTGTGGATCATGTGGCTGATGTTGAAATAGAGCGGGATATGGAAGTTGATCAAAATGATCGCATTGAAAATTTACAAGATGATAAATTAGATCAAAATATAGGAAGAAATTTTCATAATTTAGCGCATCATCCCGCTATGAGAGACATGGAAAGAGATCAGAATAATCATATTGATAATATGCATGATGATAAAATTGATCATAAAATGGGACGAGATTTTCGTAATTTGAGTTCTCATACTGGTA] [+] EMBL BI508841 [ATAGAAGTTTGAAATCATTGATCTGTATGCAACTGTACATCGATGGCAGCAAATGCATTGTTGAATAGCTATAAAGGTGAACAGTGGGGTTAGACTCGGGGGAAGGAGGCAAAGGAAAGGTAAAGGTTAGAAGAGGTTATGAACTTTAACCCACGGATAGTTGACGAAGTTTAGTTGCTGCTATGAATTGTCCAAATGATGCATAGTCAAATTTGTCATCGTTATTAATAATATAGGTAGAAATGGACAGAGATCATAGGGAACAACACGATCATGATAATATAAATGAAAACGAGGAAGAACAAAAAGTAGGAATGGATTTTCGTAATTTATCTCGTCACCATGGTGTGGATCATGTGGCTGATGTTGAAATAGAGCGGGATATGGAAGTTGATCAAAATGATCGCATTGAAAATTTACAAGATGATAAATTAGATCAAAATATAGGAAGAAATTTTCATAATTTAGCGCATCATCCCGCTATGAGAGACATGGAAAGAGATCAGAATAATCATATTGATAATATGCATGATGATAAAATTGATCATAAAATGGGACGAGATTTTCGTAATTTGAGTTCTCATACTGGTA] consensusID : consensus_2223#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence [GCCTTTAAACGATATGTTCTGTTTAGATGAAATCAAACCATATCATGATTTATCCAATTTTACTCTATACAATATTCTTATTATGTGTTATGCAATTTTTATAGAAAAGATTTTCCAAATATTTTCTTTTAGATATATTACAATTTAATCATTATGAAATAAATATTTAATTATTTATTCATTTGTTTACATATAAATATAATATTATTATTATTCCTTATTAAGTATCAAGCAACCAAAAAACATTAATTAATGAATAAATTTATAGTTATTAATTTGTATATACTCAATTTTTTTAAACAAGTGATATTCATTATTTAGAAAATATATACTATTATGATATATATGATATAAATGCAGAAATATTGTACACGTTATATGAATCTTTAATTCAACGCGATTTTCTATCTTTGCAGGTAGAAATGGACAGAGATCATAGGGAACAACACGATCACGATAATATAAATGAAAACGAGGAAGAACAAAAAGTAGGAATGGATTTTCGTAATTTATCTCGTCACCATGGTGTGGATCATGTGGCTG] [+] EMBL BI510170 [GCCTTTAAACGATATGTTCTGTTTAGATGAAATCAAACCATATCATGATTTATCCAATTTTACTCTATACAATATTCTTATTATGTGTTATGCAATTTTTATAGAAAAGATTTTCCAAATATTTTCTTTTAGATATATTACAATTTAATCATTATGAAATAAATATTTAATTATTTATTCATTTGTTTACATATAAATATAATATTATTATTATTCCTTATTAAGTATCAAGCAACCAAAAAACATTAATTAATGAATAAATTTATAGTTATTAATTTGTATATACTCAATTTTTTTAAACAAGTGATATTCATTATTTAGAAAATATATACTATTATGATATATATGATATAAATGCAGAAATATTGTACACGTTATATGAATCTTTAATTCAACGCGATTTTCTATCTTTGCAGGTAGAAATGGACAGAGATCATAGGGAACAACACGATCACGATAATATAAATGAAAACGAGGAAGAACAAAAAGTAGGAATGGATTTTCGTAATTTATCTCGTCACCATGGTGTGGATCATGTGGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2223#0 ATAGAAGTTTGAAATCATTGATCTGTATGCAACTGTACATCGATGGCAGCAAATGCATTG 60 consensus_2223#1 -------------GCCTTTAAACGATATGT---TCTGTTTAGATGAAATCAAACCATATC 44 * ** * * **** * * * **** * **** * consensus_2223#0 TTGAATAGCTATAAAGGTGAACAGTGGGGTTAGACTCGGGGGAAGGAGGCAAAGGAAAGG 120 consensus_2223#1 ATGATT---TATCCAATTTTACTCTATA-CAATATTCTTATTATG--TGTTATGCAATTT 98 *** * *** * * ** * * * ** * * * * * ** consensus_2223#0 TAAAGGTTAGAAGAGGTTATGAACTTTAACCCACGGATAGTTGACGAAGTTTAGTTGCTG 180 consensus_2223#1 TTATAG--AAAAGATTTTCCAAATATTTTCTTTTAGATATATTACAA--TTTAATCATT- 153 * * * * **** ** ** ** * **** * ** * **** * * consensus_2223#0 CTATGAATTGTCCAAATGATGCATAGTCAAATTTGTCATCGTTATTAATAATATAGGTAG 240 consensus_2223#1 --ATGAAATAAATATTTAATTATTTATTCATTTGTTTACATATAAATATAATATTATTAT 211 ***** * * * ** * * * ** * * ** ******* ** consensus_2223#0 AAATGGACAGAGATCATAGGGAACAACACGATCATGATAATATAAATGAAAACGAGGAAG 300 consensus_2223#1 TATTCC-------TTATTAAGTATCAAGCAACCA-AAAAACATTAATTAATGAATAAATT 263 * * * ** * * * * * ** * ** ** *** ** * consensus_2223#0 AACAAAAAGTAGGAATGGATTTTCGTAATTTATCTCGTCACCATGGTGTGGATCATGTGG 360 consensus_2223#1 TATAGTTATTAATT-TGTATATACTCAATTTTTTTAAACAA-GTGATATTCATTATTTAG 321 * * * ** ** ** * * ***** * * ** ** * * ** ** * * consensus_2223#0 CTGATGTTGAAATAGAGCGGGATATGGAAGTTGATCAAAATGATCGCATTGAAAATTTAC 420 consensus_2223#1 AAAATAT-ATACTATTATGATATATA-----TGATATAAATG-------CAGAAATATTG 368 ** * * ** * **** **** ***** **** * consensus_2223#0 AAGATGATAAATTAGATCAAAATATAGGAAGAAATTTTCATAATTTAGCGCATCATCCCG 480 consensus_2223#1 TACACGTTATATGAATCTTTAATTCA--ACGCGATTTTC-TATCTTTGCAGGTAGAAATG 425 * * * ** ** * *** * * * ****** ** ** ** * * consensus_2223#0 CTATGAGAGACATGGAAAGAGATCAGAATAATCATATTGATAATATGCATGATGATAAAA 540 consensus_2223#1 ----GACAGAGATC-ATAGGGAACAACACGATCA---CGATAATATAAATGAAAACGAGG 477 ** *** ** * ** ** ** * **** ******** **** * * consensus_2223#0 TTGATCATAAAATGGGACGAGATTTTCGTAATTTGAGTTCTCATACTGGTA--------- 591 consensus_2223#1 AAGAACAAAAAGTAGGAATGGATTTTCGTAATTTATCTCGTCACCATGGTGTGGATCATG 537 ** ** *** * *** ************** * *** **** consensus_2223#0 ------ consensus_2223#1 TGGCTG 543 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |