cluster # 2239

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Apis mellifera
cluster # 2239 cluster # 2239 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2239#0 length = 590 sequences # 1

consensus_2239#1 length = 480 sequences # 1

consensusID : consensus_2239#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 590
fasta sequence

                              [AAGACGATGCAAAGGAATCTAAGCTCGTAACAGAAAGAACGCCTGGCCCGAAGGCGNNNACCGGGAAGAGTATAATCAGGGCGCGAAGCGATGTACGCAGCTGCGGGTGGCGCCAGTATAGCGAATAGGAGGAAGCAGAAACGATTGCAGTTAAACAGACGCGTCGCTGAGAGTACAATTCCATCACGATTGAAGACAATTCCAGTTTCTCAGCACCACTACCACCACCAACACCATCACCCCAGCAAGTTTGCTCGTCCGCACGTTGTTCCACCATCTTCCACACCACAGCCACAACCACCGTCATCTACATTTCATCCGAGCATCGATCGACGGCGTCATGTCGAGAAGTGTCAGCAAGTTGCACCTGTTTCTCCAATCCAGTTTCCAATATCGCCACCACCACTATCCCTTGAGTCACCTAGTTCAGTTACTTGTGCCACTAAATCTAATTTTCCTTTTCCACCAACATCGATCCTCGATCTCCGAGTTTCACCATCTTCTTCAGAGCTACAGTGTGGTGGAGGACCTGGCAAAGCAGCATGGCAAGGTTGCAGCAGNCCTTCTCCCCTTCCTTTATCTCCTATGTC]

[+] EMBL BI510367             [AAGACGATGCAAAGGAATCTAAGCTCGTAACAGAAAGAACGCCTGGCCCGAAGGCGNNNACCGGGAAGAGTATAATCAGGGCGCGAAGCGATGTACGCAGCTGCGGGTGGCGCCAGTATAGCGAATAGGAGGAAGCAGAAACGATTGCAGTTAAACAGACGCGTCGCTGAGAGTACAATTCCATCACGATTGAAGACAATTCCAGTTTCTCAGCACCACTACCACCACCAACACCATCACCCCAGCAAGTTTGCTCGTCCGCACGTTGTTCCACCATCTTCCACACCACAGCCACAACCACCGTCATCTACATTTCATCCGAGCATCGATCGACGGCGTCATGTCGAGAAGTGTCAGCAAGTTGCACCTGTTTCTCCAATCCAGTTTCCAATATCGCCACCACCACTATCCCTTGAGTCACCTAGTTCAGTTACTTGTGCCACTAAATCTAATTTTCCTTTTCCACCAACATCGATCCTCGATCTCCGAGTTTCACCATCTTCTTCAGAGCTACAGTGTGGTGGAGGACCTGGCAAAGCAGCATGGCAAGGTTGCAGCAGNCCTTCTCCCCTTCCTTTATCTCCTATGTC]




>consensus_2239#0
AAGACGATGCAAAGGAATCTAAGCTCGTAACAGAAAGAACGCCTGGCCCGAAGGCGNNNA
CCGGGAAGAGTATAATCAGGGCGCGAAGCGATGTACGCAGCTGCGGGTGGCGCCAGTATA
GCGAATAGGAGGAAGCAGAAACGATTGCAGTTAAACAGACGCGTCGCTGAGAGTACAATT
CCATCACGATTGAAGACAATTCCAGTTTCTCAGCACCACTACCACCACCAACACCATCAC
CCCAGCAAGTTTGCTCGTCCGCACGTTGTTCCACCATCTTCCACACCACAGCCACAACCA
CCGTCATCTACATTTCATCCGAGCATCGATCGACGGCGTCATGTCGAGAAGTGTCAGCAA
GTTGCACCTGTTTCTCCAATCCAGTTTCCAATATCGCCACCACCACTATCCCTTGAGTCA
CCTAGTTCAGTTACTTGTGCCACTAAATCTAATTTTCCTTTTCCACCAACATCGATCCTC
GATCTCCGAGTTTCACCATCTTCTTCAGAGCTACAGTGTGGTGGAGGACCTGGCAAAGCA
GCATGGCAAGGTTGCAGCAGNCCTTCTCCCCTTCCTTTATCTCCTATGTC

consensusID : consensus_2239#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 480
fasta sequence

                              [CATCGATCCTCGATCTCCGAGTTTCACCATCTTCTTCAGAGCTACAGGTGGGTAGATTGTTCAGCAGTAATTTTTTTAAATTGCTCTAAGGTCGTTTTATTATCTTTATCTTTTAGCTCTATTTCTCTTCTTTCTCTATCACACTAGTTGCTCTTGCTAGGTAACCCTATCACATACTTATATGCAATTTCCTTATTCAAGTATTTCGATAATCCTCGTTGCACTTTGCACCTTCTTCTTGCTGGCACACCTTTACTTATTAGGAATACACCATCGATCGGCTGTCTGGTGGCGTATAAACCCGCGATAACTCATCCTCGAGCGGCTCCAGGTTCGTCAGCTGCTTATCCAAACTAAATTGTAATTTTTAGTAATTAACATGTCCCTCCTGGTTCCTATCAGCGGATACAAACATCACCTAATGTTGGAGGCAGACAGTGCAATGTTAGGAGTAAGTTGTAGTGTCTGGTATCAATCACA]

[+] EMBL BI512376             [CATCGATCCTCGATCTCCGAGTTTCACCATCTTCTTCAGAGCTACAGGTGGGTAGATTGTTCAGCAGTAATTTTTTTAAATTGCTCTAAGGTCGTTTTATTATCTTTATCTTTTAGCTCTATTTCTCTTCTTTCTCTATCACACTAGTTGCTCTTGCTAGGTAACCCTATCACATACTTATATGCAATTTCCTTATTCAAGTATTTCGATAATCCTCGTTGCACTTTGCACCTTCTTCTTGCTGGCACACCTTTACTTATTAGGAATACACCATCGATCGGCTGTCTGGTGGCGTATAAACCCGCGATAACTCATCCTCGAGCGGCTCCAGGTTCGTCAGCTGCTTATCCAAACTAAATTGTAATTTTTAGTAATTAACATGTCCCTCCTGGTTCCTATCAGCGGATACAAACATCACCTAATGTTGGAGGCAGACAGTGCAATGTTAGGAGTAAGTTGTAGTGTCTGGTATCAATCACA]




>consensus_2239#1
CATCGATCCTCGATCTCCGAGTTTCACCATCTTCTTCAGAGCTACAGGTGGGTAGATTGT
TCAGCAGTAATTTTTTTAAATTGCTCTAAGGTCGTTTTATTATCTTTATCTTTTAGCTCT
ATTTCTCTTCTTTCTCTATCACACTAGTTGCTCTTGCTAGGTAACCCTATCACATACTTA
TATGCAATTTCCTTATTCAAGTATTTCGATAATCCTCGTTGCACTTTGCACCTTCTTCTT
GCTGGCACACCTTTACTTATTAGGAATACACCATCGATCGGCTGTCTGGTGGCGTATAAA
CCCGCGATAACTCATCCTCGAGCGGCTCCAGGTTCGTCAGCTGCTTATCCAAACTAAATT
GTAATTTTTAGTAATTAACATGTCCCTCCTGGTTCCTATCAGCGGATACAAACATCACCT
AATGTTGGAGGCAGACAGTGCAATGTTAGGAGTAAGTTGTAGTGTCTGGTATCAATCACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2239#0      AAGACGATGCAAAGGAATCTAAGCTCGTAACAGAAAGAACGCCTGGCCCGAAGGCGNNNA 60
consensus_2239#1      ------------------------------------------------------------
                                                                                  

consensus_2239#0      CCGGGAAGAGTATAATCAGGGCGCGAAGCGATGTACGCAGCTGCGGGTGGCGCCAGTATA 120
consensus_2239#1      -------------------------CATCGATCCTCG-ATCTCCGAGTTTCACCATCTTC 34
                                                * ****   ** * ** ** **  * ***   * 

consensus_2239#0      GCGAA---TAGGAGGAAGCAGAAACGATTGCAGTTAAACAGACGCGTCGCTGAGAGTACA 177
consensus_2239#1      TTCAGAGCTACAGGTGGGTAGATTGTTCAGCAGTAATTTTTTTAAATTGCTCTAAG-GTC 93
                         *    **   *   * ***       ***** *          * ***   **    

consensus_2239#0      ATTCCATCACGATTGAAGACAATTCCAGTTTCTCAGCACCACTACCACCACCAACACCAT 237
consensus_2239#1      GTTTTATTATCTTTATC-----TTTTAGCTCTATTTCTCTTCTTTCTCTATCACACTAGT 148
                       **  ** *   **        **  ** *      * *  **  * * * **      *

consensus_2239#0      CACCCCAGCAAGTTTGCTCGTCCGCACGTTGTTCCACCATCTTCC-ACACCACAGCCACA 296
consensus_2239#1      TGCTCTTGCTAGGTAACCCTATCACATACTTATATGCAATTTCCTTATTCAAGTATTTCG 208
                        * *  ** ** *  * *   * **   *  *   * ** * *  *  * *      * 

consensus_2239#0      ACCACCGTCATCTACATTTCATCCGAGCATCGATCGACGGCGTCATGTCGAGAAGTGTCA 356
consensus_2239#1      ATAATCCTCGT-TGCACTTTGCACCTTCTTC--TTGCTGGC---ACACCTTTACTTATTA 262
                      *  * * ** * * ** **    *   * **  * *  ***   *   *   *  * * *

consensus_2239#0      GCAAGTTGCACC-TGTTTCTCCAATCCAGTTTCCAATATCGCCACCACCACTATCCCTTG 415
consensus_2239#1      GGAA--TACACCATCGATCGGCTGTCTGGTGGCGTATAAACCCGCGATAACTCATCCTCG 320
                      * **  * **** *   **  *  **  **  *  ***   ** * *  ***   *** *

consensus_2239#0      AGTCAC-CTAGTTCAGTTACTTGTGCCACTAAATCTAATTTTCCTTTTCCACCAACATCG 474
consensus_2239#1      AGCGGCTCCAGGTTCGTCAGCTGCTTATCCAAACTAAATTGTAATTTTTAGTAATTAACA 380
                      **   * * ** *  ** *  **     * ***   **** *  ****     *  * * 

consensus_2239#0      ATCCTCGATCTCCGAGTTTCACCATCTTCTTCAGA-GCTACAGTGTGGTGGAGGACCTGG 533
consensus_2239#1      TGTCCC---TCCTGGTTCCTATCAGCGGATACAAACATCACCTAATGTTGGAGG--CAGA 435
                         * *     * *  *   * ** *   * ** *    **    ** ******  * * 

consensus_2239#0      CAAAGCAGCATGGCAAGGTTGCAGCAGNCCTTCTCCCCTTCCTTTATCTCCTATGTC 590
consensus_2239#1      CAGTGCAATGTTAGGAGTAAGTTGTAGTGTCTGGTATCAATCACA------------ 480
                      **  ***   *    **   *  * **    *     *   *

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)