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Apis mellifera
cluster # 2262 cluster # 2262       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2262#0 length = 443 sequences # 1  
consensus_2262#1 length = 408 sequences # 1  

consensusID : consensus_2262#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence
                              [TTTTTTTTTTTGTATGCGTTTGTTTTTTTTTCTCACATTTAAGAAACTCGAAACAAGCCCTGACATGATCGCACGTCTCGGATCGTCCCGGCCCGAAAAGTCGCGTGGCAGGTATTTTAAGTCACCTTCGTTTATCGTTTTTTTGTTTTACATTTTTTTTTCCCTTTTTTTATCGTTGTTGTTGTTGTTGCTGTTGTTGTTGCATTGTTATTTTTGCCATCATTAGCATGATCGTATCGTCATTGTTACCATCGATCGTGAATGATAATTTTGTTGCTTGTGATGAGAGAGGAAAGTAAAAAAAGGANGAAAAAGAAAAAGAAAAAAAAGAAAAAAAAAAGACGNNNTAACGCGATAGCAGAAGAAATCATATGTACCTATGTATTTATGTATTATTTATTGACAATTAATAACGACCAGCTGTTTAGGTAGGATATTAAAAT]

[+] EMBL BI503707             [TTTTTTTTTTTGTATGCGTTTGTTTTTTTTTCTCACATTTAAGAAACTCGAAACAAGCCCTGACATGATCGCACGTCTCGGATCGTCCCGGCCCGAAAAGTCGCGTGGCAGGTATTTTAAGTCACCTTCGTTTATCGTTTTTTTGTTTTACATTTTTTTTTCCCTTTTTTTATCGTTGTTGTTGTTGTTGCTGTTGTTGTTGCATTGTTATTTTTGCCATCATTAGCATGATCGTATCGTCATTGTTACCATCGATCGTGAATGATAATTTTGTTGCTTGTGATGAGAGAGGAAAGTAAAAAAAGGANGAAAAAGAAAAAGAAAAAAAAGAAAAAAAAAAGACGNNNTAACGCGATAGCAGAAGAAATCATATGTACCTATGTATTTATGTATTATTTATTGACAATTAATAACGACCAGCTGTTTAGGTAGGATATTAAAAT]


>consensus_2262#0 TTTTTTTTTTTGTATGCGTTTGTTTTTTTTTCTCACATTTAAGAAACTCGAAACAAGCCC TGACATGATCGCACGTCTCGGATCGTCCCGGCCCGAAAAGTCGCGTGGCAGGTATTTTAA GTCACCTTCGTTTATCGTTTTTTTGTTTTACATTTTTTTTTCCCTTTTTTTATCGTTGTT GTTGTTGTTGCTGTTGTTGTTGCATTGTTATTTTTGCCATCATTAGCATGATCGTATCGT CATTGTTACCATCGATCGTGAATGATAATTTTGTTGCTTGTGATGAGAGAGGAAAGTAAA AAAAGGANGAAAAAGAAAAAGAAAAAAAAGAAAAAAAAAAGACGNNNTAACGCGATAGCA GAAGAAATCATATGTACCTATGTATTTATGTATTATTTATTGACAATTAATAACGACCAG CTGTTTAGGTAGGATATTAAAAT



consensusID : consensus_2262#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 408
fasta sequence
                              [TTTTTTTTGTATNCGTTTGTTTTTCTTCTCACATTTAAGAAACTCGAAACAAGCCCTGACATGATCGCACGTCTCGGATCGTCCCGGCCCGAAAAGTCGCGTGGCAGGTATTTTAAGTCACCTTCGTTTATCGTTTTTTTGTTTTACATTTTTTTTTTCCTTTTTTTTTTTTGCGTTGTTGTTGGTGGTTTGTTGTTGTTGCTCCTAAAAAAAAAAAAAAATTCCAAAGGGCGTTGTTTCGATACTTGTCACACACATACACACGACAGACCACGGGTTGGTGGTACAGGGCGTCCTGCGTTCGGGGGTCAATATGATTTATAGCGAGCTGTCCCGCTGGCGTTTTTCTTTTAAACCTATGAAGAAACTAAGAGAATGAATTTATATCTTTTTTTTTTTTTCTTTTCC]

[-] EMBL BI505983             [TTTTTTTTGTATNCGTTTGTTTTTCTTCTCACATTTAAGAAACTCGAAACAAGCCCTGACATGATCGCACGTCTCGGATCGTCCCGGCCCGAAAAGTCGCGTGGCAGGTATTTTAAGTCACCTTCGTTTATCGTTTTTTTGTTTTACATTTTTTTTTTCCTTTTTTTTTTTTGCGTTGTTGTTGGTGGTTTGTTGTTGTTGCTCCTAAAAAAAAAAAAAAATTCCAAAGGGCGTTGTTTCGATACTTGTCACACACATACACACGACAGACCACGGGTTGGTGGTACAGGGCGTCCTGCGTTCGGGGGTCAATATGATTTATAGCGAGCTGTCCCGCTGGCGTTTTTCTTTTAAACCTATGAAGAAACTAAGAGAATGAATTTATATCTTTTTTTTTTTTTCTTTTCC]


>consensus_2262#1 TTTTTTTTGTATNCGTTTGTTTTTCTTCTCACATTTAAGAAACTCGAAACAAGCCCTGAC ATGATCGCACGTCTCGGATCGTCCCGGCCCGAAAAGTCGCGTGGCAGGTATTTTAAGTCA CCTTCGTTTATCGTTTTTTTGTTTTACATTTTTTTTTTCCTTTTTTTTTTTTGCGTTGTT GTTGGTGGTTTGTTGTTGTTGCTCCTAAAAAAAAAAAAAAATTCCAAAGGGCGTTGTTTC GATACTTGTCACACACATACACACGACAGACCACGGGTTGGTGGTACAGGGCGTCCTGCG TTCGGGGGTCAATATGATTTATAGCGAGCTGTCCCGCTGGCGTTTTTCTTTTAAACCTAT GAAGAAACTAAGAGAATGAATTTATATCTTTTTTTTTTTTTCTTTTCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2262#0      TTTTTTTTTTTGTATGCGTTTGTTTTTTTTTCTCACATTTAAGAAACTCGAAACAAGCCC 60
consensus_2262#1      ---TTTTTTTTGTATNCGTTTGTTTTTCTT-CTCACATTTAAGAAACTCGAAACAAGCCC 56
                         ************ *********** ** *****************************

consensus_2262#0      TGACATGATCGCACGTCTCGGATCGTCCCGGCCCGAAAAGTCGCGTGGCAGGTATTTTAA 120
consensus_2262#1      TGACATGATCGCACGTCTCGGATCGTCCCGGCCCGAAAAGTCGCGTGGCAGGTATTTTAA 116
                      ************************************************************

consensus_2262#0      GTCACCTTCGTTTATCGTTTTTTTGTTTTACATTTTTTTTTCCCTTTTTTTATCGT-TGT 179
consensus_2262#1      GTCACCTTCGTTTATCGTTTTTTTGTTTTACATTTTTTTTTTCCTTTTTTTTTTTTGCGT 176
                      ***************************************** ********* *  *  **

consensus_2262#0      TGTTGTTGTTG--CTGTTGTTGTTGCATTGTTATTTTTGCCATCATTAGCATGATCGTAT 237
consensus_2262#1      TGTTGTTGGTGGTTTGTTGTTGTTGCTCCTAAAAAAAAAAAAAAATTCCAAAGGGCGTTG 236
                      ******** **   ************      *        *  ***   * *  ***  

consensus_2262#0      CGTCATTG-TTACCATCGAT-CGTGAATGATAATTTTGTTGCTTGTGATGAGAGAGGAAA 295
consensus_2262#1      TTTCGATACTTGTCACACACATACACACGACAGACCACGGGTTGGTGGTACAGGGCGTCC 296
                        **  *  **  **   *       * ** *        * * *** *    *  *   

consensus_2262#0      GTAAAAAAAGGANGAAAAAGAAAAAGAAAAAAAAGAAAAAAAAAAGACGNNNT---AACG 352
consensus_2262#1      TGCGTTCGGGGGTCAATATGATTTATAGCGAGCTGTCCCGCTGGCGTTTTTCTTTTAAAC 356
                               **   ** * **   * *   *   *          *      *   **  

consensus_2262#0      CGATAGCAGAAGAAATCATATGTACCTATGTATTTATGTATTATTTATTGACAATTAATA 412
consensus_2262#1      CTATGAAGAAACTAAGAGAATGAATTTATATCTTTTTTTTTTTTTCTTTTCC-------- 408
                      * **     **  **    *** *  *** * *** * * ** **  **  *        

consensus_2262#0      ACGACCAGCTGTTTAGGTAGGATATTAAAAT 443
consensus_2262#1      -------------------------------
                                                     




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)