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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_227#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 736 fasta sequence
[ACGATTTTATTAAAGGAAGATTATTCGAGATTTACCTCGAGAGGAAGGCCTACGTTTTGCCACACGTGTGCACGAAAATGATAGATTGTAGAGAGAGGGAAAAAAAATAGGAATGAAAGGGAACGAGAGAAAGAAATTATTGGCCGGTTGGGTCGAAGCGTGTGTACATAAAGAAAACATTCAGGAGGGAGTTACGGGATAAAAATAATAAGAAAGAGCTCTTACGAACGCGTATTAAAGGGGATACATTCGTTTTATTCCTTGAAAAAAATAAGTGTCGACGGATGGTATGCGAATAATTATTATTATCGTTATCGTTGGTCACACGAAGCGGTGATTTCACGCAGATTATCGTATACACGACATACACATAGAGATAGACAATAATTGTGTTTTTTAGTTAAGTGATACGCATATACAGTTACACATTGTTACTAAACGTTCGATCGGTGGATAGGTAAGCTGAAAAATTTGCCAGCATCGCGATTTCAATTTCGAATTGGATCTTGAAATTGCTTATCTAATCGCGCGATCGTTTATGAATGCTTCACGCCCCTGGCTTACGGTGAAAAATTTGAAATTGGAAAAATTAAAAAAGATTTTCATTTCTCTTATTTCCTTTTTTCATAGTGGAATTTTGGGATATCGGGATTATCTGATACGATTCTCTCATCTTCGATTTCTTGTACGAAATATTAAAAGAAAGAAAAAGAAAAATCTTGCATTACAAATCAAA]
[+] EMBL BI511951 [ACGATTTTATTAAAGGAAGATTATTCGAGATTTACCTCGAGAGGAAGGCCTACGTTTTGCCACACGTGTGCACGAAAATGATAGATTGTAGAGAGAGGGAAAAAAAATAGGAATGAAAGGGAACGAGAGAAAGAAATTATTGGCCGGTTGGGTCGAAGCGTGTGTACATAAAGAAAACATTCAGGAGGGAGTTACGGGATAAAAATAATAAGAAAGAGCTCTTACGAACGCGTATTAAAGGGGATACATTCGTTTTATTCCTTGAAAAAAATAAGTGTCGACGGATGGTATGCGAATAATTATTATTATCGTTATCGTTGGTCACACGAAGCGGTGATTTCACGCAGATTATCGTATACACGACATACACATAGAGATAGACAATAATTGTGTTTTTTAGTTAAGTGATACGCATATACAGTTACACATTGTTACTAAACGTTCGATCGGTGGATAGGT ]
[+] EMBL BI516571 [ CGCGTATTAAAGGGGATACATTCGTTTTATTCCTTGAAAAAAATAAGTGTCGACGGATGGTATTCGAATAATTATTATTATCGTTATCGTTGGTCACACGAAGCGGTGATTTCACGCAGATTATCGTATACACGACATACACATAGAGATAGACAATAATTGTGTTTTTTAGTTAAGTGATACGCATATACAGTTACACATTGTTACTAAACGTTCGATCGGTGGATAGGTAAGCTGAAAAATTTGCCAGCATCGCGATTTCAATTTCGAATTGGATCTTGAAATTGCTTATCTAATCGCGCGATCGTTTATGAATGCTTCACGCCCCTGGCTTACGGTGAAAAATTTGAAATTGGAAAAATTAAAAAAGATTTTCATTTCTCTTATTTCCTTTTTTCATAGTGGAATTTTGGGATATCGGGATTATCTGATACGATTCTCTCATCTTCGATTTCTTGTACGAAATATTAAAAGAAAGAAAAAGAAAAATCTTGCATTACAAATCAAA]
consensusID : consensus_227#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence
[ACGATTTTATTAAAGGAAGATTATTCGAGATTTACCTCGAGAGGAATGCCTACGTTTTGCCACACGTGTGCACGAAAATGATAGATTGTAGAAAGATTGATGTCGAGGAGAAAAAGAGCGAGAGCGAGAGCGAGAGGACGGAGGGAAAAGAAATAACAAACAGAGGAACGAGAATATACAATGCAGATATTTTTTTATCGAGAAAACAAAAAGAGAGAGAGAGAGAGAGAGAGAGGTAGGAAGGGAGGAGGAAATGAAAAAAGATTTATACTTATATTTTGCCAGAGCGCGTTAGAGATTTAATCGAGGAAAAAACGCGATTCGCGCGGAAATACCGAGAAATCTGTC]
[+] EMBL BI502966 [ACGATTTTATTAAAGGAAGATTATTCGAGATTTACCTCGAGAGGAATGCCTACGTTTTGCCACACGTGTGCACGAAAATGATAGATTGTAGAAAGATTGATGTCGAGGAGAAAAAGAGCGAGAGCGAGAGCGAGAGGACGGAGGGAAAAGAAATAACAAACAGAGGAACGAGAATATACAATGCAGATATTTTTTTATCGAGAAAACAAAAAGAGAGAGAGAGAGAGAGAGAGAGGTAGGAAGGGAGGAGGAAATGAAAAAAGATTTATACTTATATTTTGCCAGAGCGCGTTAGAGATTTAATCGAGGAAAAAACGCGATTCGCGCGGAAATACCGAGAAATCTGTC]
consensusID : consensus_227#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 346 fasta sequence
[TAACGATTTTATTAAAGGAAGATTATTCGAGATTTACCTCGAGAGGAAGGCCTACGTTTTGCCACACGTGTGCACGAAAATGATAGATTGTAGAAAGATTGATGTCGAGGAGAAAAAGAGCGAGAGCGAGAGCGAGAGGACGGAGGGAAAAGAAATAACAAACAGAGGAACGAGAAGTTTTTACGATGCAGGAAAATTACTGAGAAAGGTGCTGTTTAAGTTTCGAACACCTTCGAGTTTCATTTTTAAATTGTATCCATTTGCTTTTGTCTTGTCTAAATTACATGCACATAGTTTCTTATATACATACATATTTACTTTGCAACGCTCACTTGTTTCCACTTGA]
[+] EMBL BI512751 [TAACGATTTTATTAAAGGAAGATTATTCGAGATTTACCTCGAGAGGAAGGCCTACGTTTTGCCACACGTGTGCACGAAAATGATAGATTGTAGAAAGATTGATGTCGAGGAGAAAAAGAGCGAGAGCGAAAGCGAGAGGACGGAGGGAAAAGAAATAACAAACAGAGGAACGAGAAGTTTTTACGATGCAGGAAAATTACTGAGAAAGGTGCTGTTTAAGTTTCGAACACCTTCGAGTTTCATTTTTAAATTGTATCCATTTGCTTTTGTCTTGTCTAAATTACATGCACATAGTTTCTTATATACATACATATTTACTTTGCAACGCTCACTTGTTTCCACTTGA]
[+] EMBL BI515825 [ ACGATTTTATTAAAGGAAGATTATTCGAGATTTACCTCGAGAGGAAGGCCTACGTTTTGCCACACGTGTGCACGAAAATGATAGATTGTAGAAAGATTGATGTCGAGGAGAAAAAGAGCGAGAGCGAGAGCGAGAGGACGGAGGGAAAAGAAATAACAAACAGAGGAACGAGAAGTTTTTACGATGCAGGAAAATTACTGAGAAAGGTGCTGTTTAAGTTTCGAACACCTTCGAGTTTCATTTTTAAATTGTATCCATTTGCTTTTGTCTTGTCTAAATTACATGCACATAGTTTCTTATATACATACA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_227#1 --ACGATTTTATTAAAGGAAGATTATTCGAGATTTACCTCGAGAGGAATGCCTACGTTTT 58
consensus_227#2 TAACGATTTTATTAAAGGAAGATTATTCGAGATTTACCTCGAGAGGAAGGCCTACGTTTT 60
consensus_227#0 --ACGATTTTATTAAAGGAAGATTATTCGAGATTTACCTCGAGAGGAAGGCCTACGTTTT 58
********************************************** ***********
consensus_227#1 GCCACACGTGTGCACGAAAATGATAGATTGTAGAAAGATTGATGTCGAGGAGAAAAAGAG 118
consensus_227#2 GCCACACGTGTGCACGAAAATGATAGATTGTAGAAAGATTGATGTCGAGGAGAAAAAGAG 120
consensus_227#0 GCCACACGTGTGCACGAAAATGATAGATTGTAGAGAGAGGGAAAAAAAATAGGAAT-GAA 117
********************************** *** ** * ** ** **
consensus_227#1 CGAGAGCGAGAGCGAGAGGACGGAGGGAAAAGAAATAACAAACAGAGGAACGAGAATATA 178
consensus_227#2 CGAGAGCGAGAGCGAGAGGACGGAGGGAAAAGAAATAACAAACAGAGGAACGAGAA---- 176
consensus_227#0 AGGGAACGAGAGAAAGAAATTATTGGCCGGTTGGGTCGAAGCGTGTGTACATAAAGAAAA 177
* ** ****** *** ** * * * * * * *
consensus_227#1 CAATGCAGATATTTTTTTATCGAGAAAACAAAAAGAGAGAGAGAGAGAGAGAGAG----- 233
consensus_227#2 -------GTTTTTACGATGCAGGAAAATTACTGAGAAAGGTGCTGTTTAAGTTTC----- 224
consensus_227#0 CATTCAGGAGGGAGTTACGGGATAAAAATAATAAGAAAGAGCTCTTACGAACGCGTATTA 237
* *** * *** ** *
consensus_227#1 ----AGGTAGGAAGGGAGGAGGAAATGAAAAAA-GATTTA--TACTTATATTTTGCCAGA 286
consensus_227#2 ----GAACACCTTCGAGTTTCATTTTTAAATTG-TATCCATTTGCTTTTGTCTTGTCTAA 279
consensus_227#0 AAGGGGATACATTCGTTTTATTCCTTGAAAAAAATAAGTGTCGACGGATGGTATGCGAAT 297
* * * *** * * * **
consensus_227#1 GCGCGTTAGAGATTTAATCGAGGAAAAAACGCGATTCGCGCGGAAATACCGAGAAATCTG 346
consensus_227#2 ATTACATGCACATAGTTTCTTATATACATACATATTTACTTTGCAACGCTCACTTGTTTC 339
consensus_227#0 AATTATTATTATCGTTATCGTTGGT-CACACGAAGCGGTGATTTCACGCAGATTATCGTA 356
* ** * * * * * *
consensus_227#1 TC---------------------------------------------------------- 348
consensus_227#2 CACTTGA----------------------------------------------------- 346
consensus_227#0 TACACGACATACACATAGAGATAGACAATAATTGTGTTTTTTAGTTAAGTGATACGCATA 416
consensus_227#1 ------------------------------------------------------------
consensus_227#2 ------------------------------------------------------------
consensus_227#0 TACAGTTACACATTGTTACTAAACGTTCGATCGGTGGATAGGTAAGCTGAAAAATTTGCC 476
consensus_227#1 ------------------------------------------------------------
consensus_227#2 ------------------------------------------------------------
consensus_227#0 AGCATCGCGATTTCAATTTCGAATTGGATCTTGAAATTGCTTATCTAATCGCGCGATCGT 536
consensus_227#1 ------------------------------------------------------------
consensus_227#2 ------------------------------------------------------------
consensus_227#0 TTATGAATGCTTCACGCCCCTGGCTTACGGTGAAAAATTTGAAATTGGAAAAATTAAAAA 596
consensus_227#1 ------------------------------------------------------------
consensus_227#2 ------------------------------------------------------------
consensus_227#0 AGATTTTCATTTCTCTTATTTCCTTTTTTCATAGTGGAATTTTGGGATATCGGGATTATC 656
consensus_227#1 ------------------------------------------------------------
consensus_227#2 ------------------------------------------------------------
consensus_227#0 TGATACGATTCTCTCATCTTCGATTTCTTGTACGAAATATTAAAAGAAAGAAAAAGAAAA 716
consensus_227#1 --------------------
consensus_227#2 --------------------
consensus_227#0 ATCTTGCATTACAAATCAAA 736
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |