These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_229#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 636 fasta sequence [CGAAGCTTTGCGCCAAATTTTGCACTCGATTAAAAAAAACAATGCGTAAACCTTCTCTCTCGCGTAATGAAATCTCTCGTGTCGTACGAGTTTGCATCGTTTGCACGATATTTAGATCCGATGTGGACCGACCGATGTGCGATTTTGTTGCGATTTCGTAATTGCGCCATCCGTCAGATTTGTGATCGCCGCCTGTTTCACCGTTCAACTACTACTACTACTACACGTATTCGTAACGTATTTAACGGAATATCGAGGATGAATATATTTATATATTTTAAATAACAAAAGTGAGACAACAGAAGTAATAATTAATTAGAAATAATTACGAGCACAAAATATATATTATATTTGAAATGATAATATATATTTAAAAAAGAATGCAGCTCTGTTGTAACTAAAGTAACAAAATAATTCTATTAAATTTACATTAACCATCCGCGTATTTGCCGTCACGTTATCGCTAATAAACGCCTCGTTGTTAACATATGCATGGCATACGATTATCGCTTGATGAGCAAAATATTCGTGTCATTATCGAGAGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGTACTGATACCGTGCTATTATCGTTAAATGGACACGTTTCTANTAAAATGCGCGAACAATGCT] [+] EMBL BI502922 [CGAAGCTTTGCGCCAAATTTTGCACTCGATTAAAAAAAACAATGCGTAAACCTTCTCTCTCGCGTAATGAAATCTCTCGTGTCGTACGAGTTTGCATCGTTTGCACGATATTTAGATCCTATGTGGACCGACCGATGTGCGATTTTGTTGCGATTTCGTAATTGCGCCATCCGTCAGATTTGTGATCGCCGCCTGTTTCACCGTTCAACTACTACTACTACTACACGTATTCGTAACGTATTTAACGGAATATCGAGGATGAATATATTTATATATTTTAAATAACAAAAGTGAGACAACAGAAGTAATAATTAATTAGAAATAATTACGAGCACAAAATATATATTATATTTGAAATGATAATATATATTTAAAAAAGAATGCAGCTCTGTTGTAACTAAAGTAACAAAATAATTCTATTAAATTTACATTAACCATCCGCGTATTTGCCGTCACGTTATCGCTAATAAACGCCTCGTTGTTAACATATGCATGGCATACGATTATCGCTTGATGAGCAAAATATTCGTGTCATTATCGAGAGAGAGAAAGAGAAAG ] [+] EMBL BI504216 [ GCGCCAAATTTTGCACTCGATTAAAAAAAATAATGCGTAAACCTTCTCTCTCGCGTAATGAAATCTCTCGTGTCGTACGAGTTTGCATCGTTTGCACGATATTTAGATCCGATGTGGACCGACCGATGTGCGATTTTGTTGCGATTTCGTAATTGCGCCATCCGTCAGATTTGTGATCGCCGCCTGTTTCACCGTTCAACTACTACTACTACTACACGTATTCGTAACGTATTTAACGGAATATCGAGGATGAATATATTTATATATTTTAAATAACAAAAGTGAGACAACAGAAGTAATAATTAATTAGAAATAATTACGAGCACAAAATATATATTATATTTGAAATGATAATATATATTTAAAAAAGAATGCAGCTCTGTTGTAACTAAAGTAACAAAATAATTCTATTAAATTTACATTAACCATCCGCGTATTTGCCGTCACGTTATCGCTAATAAACGCCTCGTTGTTAACATATGCATGGCATACGATTATCGCTTGATGAGCAAAATATTCGTGTCATTATCGAGAGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGTACTGATACCGTGCTATTATCGTTAAATGGACACGTTTCTANTAAAATGCGCGAACAATGCT] [+] EMBL BI504139 [ GCGCCAAATTTTGCACTCGATTAAAAAAAACAATGCGTAAACCTTCTCTCTCGCGTAATGAAATCTCTCGTGTCGTACGAGTTTGCATCGTTTGCACGATATTTAGATCCGATGTGGACCGACCGATGTGCGATTTTGTTGCGATTTCGTAATTGCGCCATCCGTCAGATTTGTGATCGCCGCCTGTTTCACCGTTCAACTACTACTACTACTACACGTATTCGTAACGTATTTAACGGAATATCGAGGATGAATATATTTATATATTTTAAATAACAAAAGTGAGACAACAGAAGTAATAATTAATTAGAAATAATTACGAGCACAAAATATATATTATATTTGAAATGATAATATATATTTAAAAAAGAATGCAGCTCTGTTGTAACTAAAGTAACAAAATAATTCTATTAAATTTACATTAACCATCCGCGTATTTGCCGTCACGTTATCGCTAATAAACGCCTCGTTGTTAACATATGCATGGCATACGATTATCGCTTGATGAGCAAAATATTCGTGTCATTATCGAGAGAGAGAAAGAGAAAGAGAGAGAGAGAGA ] [+] EMBL BI503474 [ GCGCCAAATTTTGCACTCGATTAAAAAAAACAATGCGTAAACCTTCTCTCTCGCGTAATGAAATCTCTCGTGTCGTACGAGTTTGCATCGTTTGCACGATATTTAGATCCGATGTGGACCGACCGATGTGCGATTTTGTTGCGATTTCGTAATTGCGCCATCCGTCAGATTTGTGATCGCCGCCTGTTTCACCGTTCAACTACTACTACTACTACACGTATTCGTAACGTATTTAACGGAATATCGAGGATGAATATATTTATATATTTTAAATAACAAAAGTGAGACAACAGAAGTAATAATTAATTAGAAATAATTACGAGCACAAAATATATATTATATTTGAAATGATAATATATATTTAAAAAAGAATGCAGCTCTGTTGTAACTAAAGTAACAAAATAATTCTATTAAATTTACATTAACCATCCGCGTATTTGCCGTCACGTTATCGCTAATAAACGCCTCGTTGTTAACATATGCATGGCATACGATTATCGCTTGATGAGCAAAATATTCGTGTCATTATCGAGAGAGAGAAAGAGAAAGA ] consensusID : consensus_229#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence [AAAAGAGAATGATTTTGCGATTAATTGAAATATACACGTGGATCATCGCACGCGAAGCTTTGCGCCAAATTTTGCACTCGATTAAAAAAAACAATGCGTAAACCTTCTCTCTCGCGTAATGAAATCTCTCGTGTCGTACGAGTTTGCATCGTTTGCACGATATTTAGATCCGATGTGGACCGACCGATGTGCGATTTTGTTGCGATTTCGTAATTGCGCCATCCGTCAGATTTGTGATCGCCGCCTGTTTCACCGTTCAATCTCCCTCCAATCACTCAGAAAGAGAAAAAGAAAAAAGAAAAAAAAACCTCGTTATCGCGTCTCGATTATTCGGTAAATTTGCGATAAGTAGTCCGTGGAAGCGCACCAAGCTTACTGGAAAAGAGAAGAGAGAGAGTGAAAGAGAGAGTG] [+] EMBL BI511260 [AAAAGAGAATGATTTTGCGATTAATTGAAATATACACGTGGATCATCGCACGCGAAGCTTTGCGCCAAATTTTGCACTCGATTAAAAAAAACAATGCGTAAACCTTCTCTCTCGCGTAATGAAATCTCTCGTGTCGTACGAGTTTGCATCGTTTGCACGATATTTAGATCCGATGTGGACCGACCGATGTGCGATTTTGTTGCGATTTCGTAATTGCGCCATCCGTCAGATTTGTGATCGCCGCCTGTTTCACCGTTCAATCTCCCTCCAATCACTCAGAAAGAGAAAAAGAAAAAAGAAAAAAAAACCTCGTTATCGCGTCTCGATTATTCGGTAAATTTGCGATAAGTAGTCCGTGGAAGCGCACCAAGCTTACTGGAAAAGAGAAGAGAGAGAGTGAAAGAGAGAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_229#0 ----------------------------------------------------CGAAGCTT 8 consensus_229#1 AAAAGAGAATGATTTTGCGATTAATTGAAATATACACGTGGATCATCGCACGCGAAGCTT 60 ******** consensus_229#0 TGCGCCAAATTTTGCACTCGATTAAAAAAAACAATGCGTAAACCTTCTCTCTCGCGTAAT 68 consensus_229#1 TGCGCCAAATTTTGCACTCGATTAAAAAAAACAATGCGTAAACCTTCTCTCTCGCGTAAT 120 ************************************************************ consensus_229#0 GAAATCTCTCGTGTCGTACGAGTTTGCATCGTTTGCACGATATTTAGATCCGATGTGGAC 128 consensus_229#1 GAAATCTCTCGTGTCGTACGAGTTTGCATCGTTTGCACGATATTTAGATCCGATGTGGAC 180 ************************************************************ consensus_229#0 CGACCGATGTGCGATTTTGTTGCGATTTCGTAATTGCGCCATCCGTCAGATTTGTGATCG 188 consensus_229#1 CGACCGATGTGCGATTTTGTTGCGATTTCGTAATTGCGCCATCCGTCAGATTTGTGATCG 240 ************************************************************ consensus_229#0 CCGCCTGTTTCACCGTTCAACTACTACTACTACTACACGTATTCGTAACGTATTTAACGG 248 consensus_229#1 CCGCCTGTTTCACCGTTCAATCTCC-------CTCCAATCACTCAGAAAGAGAAAAAGAA 293 ******************** * ** ** * ** ** * ** consensus_229#0 AATATCGAGGATGAATATATTTATATATTTTAAATAACAAAAGTGAGACAACAGAAGTAA 308 consensus_229#1 AAAAGAAAAAAAAACCTCGTTATCGCGTCTCGATTA-------TTCGGTAA-ATTTGCGA 345 ** * * * * ** * * * ** * * ** * * * consensus_229#0 TAATTAATTAGAAATAATTACGAGCACAAAATATATATTATATTTGAAATGATAATATAT 368 consensus_229#1 TAAGTAGTCCG-------TGGAAGCGCACCAAGCTTACTGGAAAAGAGAAGAGAGAGAGT 398 *** ** * * * *** ** * ** * * ** * ** * * consensus_229#0 ATTTAAAAAAGAATGCAGCTCTGTTGTAACTAAAGTAACAAAATAATTCTATTAAATTTA 428 consensus_229#1 GA--AAGAGAGAGTG--------------------------------------------- 411 ** * *** ** consensus_229#0 CATTAACCATCCGCGTATTTGCCGTCACGTTATCGCTAATAAACGCCTCGTTGTTAACAT 488 consensus_229#1 ------------------------------------------------------------ consensus_229#0 ATGCATGGCATACGATTATCGCTTGATGAGCAAAATATTCGTGTCATTATCGAGAGAGAG 548 consensus_229#1 ------------------------------------------------------------ consensus_229#0 AAAGAGAAAGAGAGAGAGAGAGAGAGTACTGATACCGTGCTATTATCGTTAAATGGACAC 608 consensus_229#1 ------------------------------------------------------------ consensus_229#0 GTTTCTANTAAAATGCGCGAACAATGCT 636 consensus_229#1 ---------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |