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Apis mellifera
cluster # 229 cluster # 229       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_229#0 length = 636 sequences # 4  
 consensus_229#1 length = 411 sequences # 1  
consensusID : consensus_229#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 636
fasta sequence 
                              [CGAAGCTTTGCGCCAAATTTTGCACTCGATTAAAAAAAACAATGCGTAAACCTTCTCTCTCGCGTAATGAAATCTCTCGTGTCGTACGAGTTTGCATCGTTTGCACGATATTTAGATCCGATGTGGACCGACCGATGTGCGATTTTGTTGCGATTTCGTAATTGCGCCATCCGTCAGATTTGTGATCGCCGCCTGTTTCACCGTTCAACTACTACTACTACTACACGTATTCGTAACGTATTTAACGGAATATCGAGGATGAATATATTTATATATTTTAAATAACAAAAGTGAGACAACAGAAGTAATAATTAATTAGAAATAATTACGAGCACAAAATATATATTATATTTGAAATGATAATATATATTTAAAAAAGAATGCAGCTCTGTTGTAACTAAAGTAACAAAATAATTCTATTAAATTTACATTAACCATCCGCGTATTTGCCGTCACGTTATCGCTAATAAACGCCTCGTTGTTAACATATGCATGGCATACGATTATCGCTTGATGAGCAAAATATTCGTGTCATTATCGAGAGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGTACTGATACCGTGCTATTATCGTTAAATGGACACGTTTCTANTAAAATGCGCGAACAATGCT]

[+] EMBL BI502922             [CGAAGCTTTGCGCCAAATTTTGCACTCGATTAAAAAAAACAATGCGTAAACCTTCTCTCTCGCGTAATGAAATCTCTCGTGTCGTACGAGTTTGCATCGTTTGCACGATATTTAGATCCTATGTGGACCGACCGATGTGCGATTTTGTTGCGATTTCGTAATTGCGCCATCCGTCAGATTTGTGATCGCCGCCTGTTTCACCGTTCAACTACTACTACTACTACACGTATTCGTAACGTATTTAACGGAATATCGAGGATGAATATATTTATATATTTTAAATAACAAAAGTGAGACAACAGAAGTAATAATTAATTAGAAATAATTACGAGCACAAAATATATATTATATTTGAAATGATAATATATATTTAAAAAAGAATGCAGCTCTGTTGTAACTAAAGTAACAAAATAATTCTATTAAATTTACATTAACCATCCGCGTATTTGCCGTCACGTTATCGCTAATAAACGCCTCGTTGTTAACATATGCATGGCATACGATTATCGCTTGATGAGCAAAATATTCGTGTCATTATCGAGAGAGAGAAAGAGAAAG                                                                              ]
[+] EMBL BI504216             [         GCGCCAAATTTTGCACTCGATTAAAAAAAATAATGCGTAAACCTTCTCTCTCGCGTAATGAAATCTCTCGTGTCGTACGAGTTTGCATCGTTTGCACGATATTTAGATCCGATGTGGACCGACCGATGTGCGATTTTGTTGCGATTTCGTAATTGCGCCATCCGTCAGATTTGTGATCGCCGCCTGTTTCACCGTTCAACTACTACTACTACTACACGTATTCGTAACGTATTTAACGGAATATCGAGGATGAATATATTTATATATTTTAAATAACAAAAGTGAGACAACAGAAGTAATAATTAATTAGAAATAATTACGAGCACAAAATATATATTATATTTGAAATGATAATATATATTTAAAAAAGAATGCAGCTCTGTTGTAACTAAAGTAACAAAATAATTCTATTAAATTTACATTAACCATCCGCGTATTTGCCGTCACGTTATCGCTAATAAACGCCTCGTTGTTAACATATGCATGGCATACGATTATCGCTTGATGAGCAAAATATTCGTGTCATTATCGAGAGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGTACTGATACCGTGCTATTATCGTTAAATGGACACGTTTCTANTAAAATGCGCGAACAATGCT]
[+] EMBL BI504139             [         GCGCCAAATTTTGCACTCGATTAAAAAAAACAATGCGTAAACCTTCTCTCTCGCGTAATGAAATCTCTCGTGTCGTACGAGTTTGCATCGTTTGCACGATATTTAGATCCGATGTGGACCGACCGATGTGCGATTTTGTTGCGATTTCGTAATTGCGCCATCCGTCAGATTTGTGATCGCCGCCTGTTTCACCGTTCAACTACTACTACTACTACACGTATTCGTAACGTATTTAACGGAATATCGAGGATGAATATATTTATATATTTTAAATAACAAAAGTGAGACAACAGAAGTAATAATTAATTAGAAATAATTACGAGCACAAAATATATATTATATTTGAAATGATAATATATATTTAAAAAAGAATGCAGCTCTGTTGTAACTAAAGTAACAAAATAATTCTATTAAATTTACATTAACCATCCGCGTATTTGCCGTCACGTTATCGCTAATAAACGCCTCGTTGTTAACATATGCATGGCATACGATTATCGCTTGATGAGCAAAATATTCGTGTCATTATCGAGAGAGAGAAAGAGAAAGAGAGAGAGAGAGA                                                                 ]
[+] EMBL BI503474             [         GCGCCAAATTTTGCACTCGATTAAAAAAAACAATGCGTAAACCTTCTCTCTCGCGTAATGAAATCTCTCGTGTCGTACGAGTTTGCATCGTTTGCACGATATTTAGATCCGATGTGGACCGACCGATGTGCGATTTTGTTGCGATTTCGTAATTGCGCCATCCGTCAGATTTGTGATCGCCGCCTGTTTCACCGTTCAACTACTACTACTACTACACGTATTCGTAACGTATTTAACGGAATATCGAGGATGAATATATTTATATATTTTAAATAACAAAAGTGAGACAACAGAAGTAATAATTAATTAGAAATAATTACGAGCACAAAATATATATTATATTTGAAATGATAATATATATTTAAAAAAGAATGCAGCTCTGTTGTAACTAAAGTAACAAAATAATTCTATTAAATTTACATTAACCATCCGCGTATTTGCCGTCACGTTATCGCTAATAAACGCCTCGTTGTTAACATATGCATGGCATACGATTATCGCTTGATGAGCAAAATATTCGTGTCATTATCGAGAGAGAGAAAGAGAAAGA                                                                             ]




>consensus_229#0
CGAAGCTTTGCGCCAAATTTTGCACTCGATTAAAAAAAACAATGCGTAAACCTTCTCTCT
CGCGTAATGAAATCTCTCGTGTCGTACGAGTTTGCATCGTTTGCACGATATTTAGATCCG
ATGTGGACCGACCGATGTGCGATTTTGTTGCGATTTCGTAATTGCGCCATCCGTCAGATT
TGTGATCGCCGCCTGTTTCACCGTTCAACTACTACTACTACTACACGTATTCGTAACGTA
TTTAACGGAATATCGAGGATGAATATATTTATATATTTTAAATAACAAAAGTGAGACAAC
AGAAGTAATAATTAATTAGAAATAATTACGAGCACAAAATATATATTATATTTGAAATGA
TAATATATATTTAAAAAAGAATGCAGCTCTGTTGTAACTAAAGTAACAAAATAATTCTAT
TAAATTTACATTAACCATCCGCGTATTTGCCGTCACGTTATCGCTAATAAACGCCTCGTT
GTTAACATATGCATGGCATACGATTATCGCTTGATGAGCAAAATATTCGTGTCATTATCG
AGAGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGTACTGATACCGTGCTATTATCGTTAA
ATGGACACGTTTCTANTAAAATGCGCGAACAATGCT

consensusID : consensus_229#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence 
                              [AAAAGAGAATGATTTTGCGATTAATTGAAATATACACGTGGATCATCGCACGCGAAGCTTTGCGCCAAATTTTGCACTCGATTAAAAAAAACAATGCGTAAACCTTCTCTCTCGCGTAATGAAATCTCTCGTGTCGTACGAGTTTGCATCGTTTGCACGATATTTAGATCCGATGTGGACCGACCGATGTGCGATTTTGTTGCGATTTCGTAATTGCGCCATCCGTCAGATTTGTGATCGCCGCCTGTTTCACCGTTCAATCTCCCTCCAATCACTCAGAAAGAGAAAAAGAAAAAAGAAAAAAAAACCTCGTTATCGCGTCTCGATTATTCGGTAAATTTGCGATAAGTAGTCCGTGGAAGCGCACCAAGCTTACTGGAAAAGAGAAGAGAGAGAGTGAAAGAGAGAGTG]

[+] EMBL BI511260             [AAAAGAGAATGATTTTGCGATTAATTGAAATATACACGTGGATCATCGCACGCGAAGCTTTGCGCCAAATTTTGCACTCGATTAAAAAAAACAATGCGTAAACCTTCTCTCTCGCGTAATGAAATCTCTCGTGTCGTACGAGTTTGCATCGTTTGCACGATATTTAGATCCGATGTGGACCGACCGATGTGCGATTTTGTTGCGATTTCGTAATTGCGCCATCCGTCAGATTTGTGATCGCCGCCTGTTTCACCGTTCAATCTCCCTCCAATCACTCAGAAAGAGAAAAAGAAAAAAGAAAAAAAAACCTCGTTATCGCGTCTCGATTATTCGGTAAATTTGCGATAAGTAGTCCGTGGAAGCGCACCAAGCTTACTGGAAAAGAGAAGAGAGAGAGTGAAAGAGAGAGTG]




>consensus_229#1
AAAAGAGAATGATTTTGCGATTAATTGAAATATACACGTGGATCATCGCACGCGAAGCTT
TGCGCCAAATTTTGCACTCGATTAAAAAAAACAATGCGTAAACCTTCTCTCTCGCGTAAT
GAAATCTCTCGTGTCGTACGAGTTTGCATCGTTTGCACGATATTTAGATCCGATGTGGAC
CGACCGATGTGCGATTTTGTTGCGATTTCGTAATTGCGCCATCCGTCAGATTTGTGATCG
CCGCCTGTTTCACCGTTCAATCTCCCTCCAATCACTCAGAAAGAGAAAAAGAAAAAAGAA
AAAAAAACCTCGTTATCGCGTCTCGATTATTCGGTAAATTTGCGATAAGTAGTCCGTGGA
AGCGCACCAAGCTTACTGGAAAAGAGAAGAGAGAGAGTGAAAGAGAGAGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_229#0      ----------------------------------------------------CGAAGCTT 8
consensus_229#1      AAAAGAGAATGATTTTGCGATTAATTGAAATATACACGTGGATCATCGCACGCGAAGCTT 60
                                                                         ********

consensus_229#0      TGCGCCAAATTTTGCACTCGATTAAAAAAAACAATGCGTAAACCTTCTCTCTCGCGTAAT 68
consensus_229#1      TGCGCCAAATTTTGCACTCGATTAAAAAAAACAATGCGTAAACCTTCTCTCTCGCGTAAT 120
                     ************************************************************

consensus_229#0      GAAATCTCTCGTGTCGTACGAGTTTGCATCGTTTGCACGATATTTAGATCCGATGTGGAC 128
consensus_229#1      GAAATCTCTCGTGTCGTACGAGTTTGCATCGTTTGCACGATATTTAGATCCGATGTGGAC 180
                     ************************************************************

consensus_229#0      CGACCGATGTGCGATTTTGTTGCGATTTCGTAATTGCGCCATCCGTCAGATTTGTGATCG 188
consensus_229#1      CGACCGATGTGCGATTTTGTTGCGATTTCGTAATTGCGCCATCCGTCAGATTTGTGATCG 240
                     ************************************************************

consensus_229#0      CCGCCTGTTTCACCGTTCAACTACTACTACTACTACACGTATTCGTAACGTATTTAACGG 248
consensus_229#1      CCGCCTGTTTCACCGTTCAATCTCC-------CTCCAATCACTCAGAAAGAGAAAAAGAA 293
                     ********************   *        ** **   * **  ** *     **   

consensus_229#0      AATATCGAGGATGAATATATTTATATATTTTAAATAACAAAAGTGAGACAACAGAAGTAA 308
consensus_229#1      AAAAGAAAAAAAAACCTCGTTATCGCGTCTCGATTA-------TTCGGTAA-ATTTGCGA 345
                     ** *   *  *  *     **      * *  * **       *  *  ** *   *  *

consensus_229#0      TAATTAATTAGAAATAATTACGAGCACAAAATATATATTATATTTGAAATGATAATATAT 368
consensus_229#1      TAAGTAGTCCG-------TGGAAGCGCACCAAGCTTACTGGAAAAGAGAAGAGAGAGAGT 398
                     *** ** *  *       *   *** **  *    ** *  *   ** * ** *     *

consensus_229#0      ATTTAAAAAAGAATGCAGCTCTGTTGTAACTAAAGTAACAAAATAATTCTATTAAATTTA 428
consensus_229#1      GA--AAGAGAGAGTG--------------------------------------------- 411
                         ** * *** **                                             

consensus_229#0      CATTAACCATCCGCGTATTTGCCGTCACGTTATCGCTAATAAACGCCTCGTTGTTAACAT 488
consensus_229#1      ------------------------------------------------------------
                                                                                 

consensus_229#0      ATGCATGGCATACGATTATCGCTTGATGAGCAAAATATTCGTGTCATTATCGAGAGAGAG 548
consensus_229#1      ------------------------------------------------------------
                                                                                 

consensus_229#0      AAAGAGAAAGAGAGAGAGAGAGAGAGTACTGATACCGTGCTATTATCGTTAAATGGACAC 608
consensus_229#1      ------------------------------------------------------------
                                                                                 

consensus_229#0      GTTTCTANTAAAATGCGCGAACAATGCT 636
consensus_229#1      ----------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)