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Apis mellifera
cluster # 2407 cluster # 2407       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2407#0 length = 575 sequences # 1  
consensus_2407#1 length = 354 sequences # 1  

consensusID : consensus_2407#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence
                              [CGGTGGCCATATTCGTGGGCAAATCGAAAGAGTGGATCCCAGAATTGGTTCGAGCATCGAAGAAATTGAAAGTGAACGCCGGACACGTGCCTGGGACCGATCTTGGACCGGTTATATCGCCTCGATCCAAGGAGAGGATATGCGATCTCGTCGAGTCGGGCGTGAAAGATGGCGCCACGTTAGCTCTCGATGGCAGAGGCCTCGTTGTCCGTGGTTTCGAAAAGGGGAATTTCGTTGGACCGACCGTGTTGACTGATGTGAAGCCTACCATGAAGTGTTACACCGAGGAGATCTTTGGACCCGTTCTCTCGTGCATTTTCACCGACACTTTGGACGAGGCGATCGATATTATTAACAAAAGCCCTTACGGGAACGGGACTGCTGTATTCACGTCGAATGGTGCAACGGCGAGAGCGTTCGTAAATAGGATCGAAGCTGGTCAAGTTGGCGTAAATGTTCCTATCCCAGTGCCTTTGCCAATGTTCAGTTTCACTGGAAACAAGGGATCATTTTTGGGTGATAATCATTTTTACGGGAAGCACGGTATAAATTTTTACACACAAGTGAAAACGATA]

[+] EMBL BI516782             [CGGTGGCCATATTCGTGGGCAAATCGAAAGAGTGGATCCCAGAATTGGTTCGAGCATCGAAGAAATTGAAAGTGAACGCCGGACACGTGCCTGGGACCGATCTTGGACCGGTTATATCGCCTCGATCCAAGGAGAGGATATGCGATCTCGTCGAGTCGGGCGTGAAAGATGGCGCCACGTTAGCTCTCGATGGCAGAGGCCTCGTTGTCCGTGGTTTCGAAAAGGGGAATTTCGTTGGACCGACCGTGTTGACTGATGTGAAGCCTACCATGAAGTGTTACACCGAGGAGATCTTTGGACCCGTTCTCTCGTGCATTTTCACCGACACTTTGGACGAGGCGATCGATATTATTAACAAAAGCCCTTACGGGAACGGGACTGCTGTATTCACGTCGAATGGTGCAACGGCGAGAGCGTTCGTAAATAGGATCGAAGCTGGTCAAGTTGGCGTAAATGTTCCTATCCCAGTGCCTTTGCCAATGTTCAGTTTCACTGGAAACAAGGGATCATTTTTGGGTGATAATCATTTTTACGGGAAGCACGGTATAAATTTTTACACACAAGTGAAAACGATA]


>consensus_2407#0 CGGTGGCCATATTCGTGGGCAAATCGAAAGAGTGGATCCCAGAATTGGTTCGAGCATCGA AGAAATTGAAAGTGAACGCCGGACACGTGCCTGGGACCGATCTTGGACCGGTTATATCGC CTCGATCCAAGGAGAGGATATGCGATCTCGTCGAGTCGGGCGTGAAAGATGGCGCCACGT TAGCTCTCGATGGCAGAGGCCTCGTTGTCCGTGGTTTCGAAAAGGGGAATTTCGTTGGAC CGACCGTGTTGACTGATGTGAAGCCTACCATGAAGTGTTACACCGAGGAGATCTTTGGAC CCGTTCTCTCGTGCATTTTCACCGACACTTTGGACGAGGCGATCGATATTATTAACAAAA GCCCTTACGGGAACGGGACTGCTGTATTCACGTCGAATGGTGCAACGGCGAGAGCGTTCG TAAATAGGATCGAAGCTGGTCAAGTTGGCGTAAATGTTCCTATCCCAGTGCCTTTGCCAA TGTTCAGTTTCACTGGAAACAAGGGATCATTTTTGGGTGATAATCATTTTTACGGGAAGC ACGGTATAAATTTTTACACACAAGTGAAAACGATA



consensusID : consensus_2407#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 354
fasta sequence
                              [TAGAATAAAATATTTTTCGTGTTTGACGTTCGTCATATACCAAATCGCAAGTAACATCGTTAGCATTACATAAATATTTTAAAGTGTACGAATGCTCCAAATTTATCGAATTCTTCATTCTGTTTTTTTTCTTTTTTCCTCTTTTTTTTTTTTTTTTTTTTTTTCTTTAATATCATAATTTATCATTAAATAATGTTACATATAATAACATCGAAACAAAATCTCGCAATATGTTTCAGCCTACCATGAAGTGTTACACCGAGGAGATCTTTGGACCCGTTCTCNCGTGCATTTTCACCGACACTTTGAACGAGGCGATCGATTTTATTAACAAAAGCCCTTACGGGAACGGGA]

[+] EMBL BI510830             [TAGAATAAAATATTTTTCGTGTTTGACGTTCGTCATATACCAAATCGCAAGTAACATCGTTAGCATTACATAAATATTTTAAAGTGTACGAATGCTCCAAATTTATCGAATTCTTCATTCTGTTTTTTTTCTTTTTTCCTCTTTTTTTTTTTTTTTTTTTTTTTCTTTAATATCATAATTTATCATTAAATAATGTTACATATAATAACATCGAAACAAAATCTCGCAATATGTTTCAGCCTACCATGAAGTGTTACACCGAGGAGATCTTTGGACCCGTTCTCNCGTGCATTTTCACCGACACTTTGAACGAGGCGATCGATTTTATTAACAAAAGCCCTTACGGGAACGGGA]


>consensus_2407#1 TAGAATAAAATATTTTTCGTGTTTGACGTTCGTCATATACCAAATCGCAAGTAACATCGT TAGCATTACATAAATATTTTAAAGTGTACGAATGCTCCAAATTTATCGAATTCTTCATTC TGTTTTTTTTCTTTTTTCCTCTTTTTTTTTTTTTTTTTTTTTTTCTTTAATATCATAATT TATCATTAAATAATGTTACATATAATAACATCGAAACAAAATCTCGCAATATGTTTCAGC CTACCATGAAGTGTTACACCGAGGAGATCTTTGGACCCGTTCTCNCGTGCATTTTCACCG ACACTTTGAACGAGGCGATCGATTTTATTAACAAAAGCCCTTACGGGAACGGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2407#0      CGGTGGCCATATTCGTGGGCAAATCGAA-AGAGTGGATCCCAGAATTGGT-TCGAGCATC 58
consensus_2407#1      -----------------------TAGAATAAAATATTTTTCGTGTTTGACGTTCGTCATA 37
                                             * *** * * *   *  *    ***   *    *** 

consensus_2407#0      GAAGAAATTGAAAGTGAACGCCGGACACGTGCCTGGGACCGATCTTGGACCGGTTATATC 118
consensus_2407#1      TACCAAATCGCAAGT-AACATCGTTAGCATTACATAAAT--ATTTTAAAGTGTACGAATG 94
                       *  **** * **** ***  **    * *  *    *   ** **  *  *     ** 

consensus_2407#0      GCCTCGATCCAAGGAGAGGAT-ATGCGATCTCGTCGAGTCGGGCGTGAAAGATGGCGCCA 177
consensus_2407#1      CTCCAAATTTATCGAATTCTTCATTCTGTTTTTTTTCTTTTTTCCTCTTTTTTTTTTTTT 154
                        *   **  *  **     * ** *  * *  *    *    * *      *       

consensus_2407#0      CGTTAGCTCTCGATGGCAG-AGGCCTCGTTGTCCG-TGGTTTCGAAAAGGGGAATTTCGT 235
consensus_2407#1      TTTTTTTTTTCTTTAATATCATAATTTATCATTAAATAATGTTACATATAATAACATCG- 213
                        **   * **  *   *  *    *  *  *    *  * *   * *    **  *** 

consensus_2407#0      TGGACCGACCGTGTTGACTGATGTGAAGCCTACCATGAAGTGTTACACCGAGGAGATCTT 295
consensus_2407#1      -AAACAAAATCTCGCAATATGTTTCA-GCCTACCATGAAGTGTTACACCGAGGAGATCTT 271
                         **  *   *    *    * * * *********************************

consensus_2407#0      TGGACCCGTTCTCTCGTGCATTTTCACCGACACTTTGGACGAGGCGATCGATATTATTAA 355
consensus_2407#1      TGGACCCGTTCTCNCGTGCATTTTCACCGACACTTTGAACGAGGCGATCGATTTTATTAA 331
                      ************* *********************** ************** *******

consensus_2407#0      CAAAAGCCCTTACGGGAACGGGACTGCTGTATTCACGTCGAATGGTGCAACGGCGAGAGC 415
consensus_2407#1      CAAAAGCCCTTACGGGAACGGGA------------------------------------- 354
                      ***********************                                     

consensus_2407#0      GTTCGTAAATAGGATCGAAGCTGGTCAAGTTGGCGTAAATGTTCCTATCCCAGTGCCTTT 475
consensus_2407#1      ------------------------------------------------------------
                                                                                  

consensus_2407#0      GCCAATGTTCAGTTTCACTGGAAACAAGGGATCATTTTTGGGTGATAATCATTTTTACGG 535
consensus_2407#1      ------------------------------------------------------------
                                                                                  

consensus_2407#0      GAAGCACGGTATAAATTTTTACACACAAGTGAAAACGATA 575
consensus_2407#1      ----------------------------------------
                                                              




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)