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Apis mellifera
cluster # 2411 cluster # 2411       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2411#0 length = 648 sequences # 1  
consensus_2411#1 length = 534 sequences # 1  

consensusID : consensus_2411#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 648
fasta sequence
                              [CAAACGTAAAGATAAGCTTAAATTGCAAGATTATAGTCCATGGTTTTGTAATTTTTTTGAAAAAAACATAGAAATACCTGGTCAATATACTGGTAAAAGAAAACCTATGCCTCAATATCATGCAAAAATTATAAAGTTTGAATCTACTGTAAAAGTAATGCAATCAATACGGAAACCTATTCGAATTACTATGATTGGTAATGATGCAAAGGATTATCATTTTTTAGTAAAATTTGGAGAAGATTTACGACAAGATCAAAGATTACAACAGTTATTTACTATTATGAACAAAACTTTGTATATTAATGCAGCTTGTAGACAAAGACAATTACTTATTGATACTTATCAGGTGATTCCATTGTCTAAAACAATGGGTCTTATACAATGGATAGATAATACAAGATCTTTAAAAGAGTTAATATATTTCACATTATCAACACAAGAAATAAATCAGTATAATTCTATAATTAAAATGTATCAAGAATGGATACAAAAGGCTGCACCTTCTAAAAAATTGGTACATGAAAAGTATAAAGAAGCAGTGGTAAAATATAATGCTTCAGAAGTATATACCAAAATGAACGAATTTATTAATAAAACTAAATGGGATAGTTTACGCAAGACACTAATAGTATTATGTCCATCTAT]

[+] EMBL BI503368             [CAAACGTAAAGATAAGCTTAAATTGCAAGATTATAGTCCATGGTTTTGTAATTTTTTTGAAAAAAACATAGAAATACCTGGTCAATATACTGGTAAAAGAAAACCTATGCCTCAATATCATGCAAAAATTATAAAGTTTGAATCTACTGTAAAAGTAATGCAATCAATACGGAAACCTATTCGAATTACTATGATTGGTAATGATGCAAAGGATTATCATTTTTTAGTAAAATTTGGAGAAGATTTACGACAAGATCAAAGATTACAACAGTTATTTACTATTATGAACAAAACTTTGTATATTAATGCAGCTTGTAGACAAAGACAATTACTTATTGATACTTATCAGGTGATTCCATTGTCTAAAACAATGGGTCTTATACAATGGATAGATAATACAAGATCTTTAAAAGAGTTAATATATTTCACATTATCAACACAAGAAATAAATCAGTATAATTCTATAATTAAAATGTATCAAGAATGGATACAAAAGGCTGCACCTTCTAAAAAATTGGTACATGAAAAGTATAAAGAAGCAGTGGTAAAATATAATGCTTCAGAAGTATATACCAAAATGAACGAATTTATTAATAAAACTAAATGGGATAGTTTACGCAAGACACTAATAGTATTATGTCCATCTAT]


>consensus_2411#0 CAAACGTAAAGATAAGCTTAAATTGCAAGATTATAGTCCATGGTTTTGTAATTTTTTTGA AAAAAACATAGAAATACCTGGTCAATATACTGGTAAAAGAAAACCTATGCCTCAATATCA TGCAAAAATTATAAAGTTTGAATCTACTGTAAAAGTAATGCAATCAATACGGAAACCTAT TCGAATTACTATGATTGGTAATGATGCAAAGGATTATCATTTTTTAGTAAAATTTGGAGA AGATTTACGACAAGATCAAAGATTACAACAGTTATTTACTATTATGAACAAAACTTTGTA TATTAATGCAGCTTGTAGACAAAGACAATTACTTATTGATACTTATCAGGTGATTCCATT GTCTAAAACAATGGGTCTTATACAATGGATAGATAATACAAGATCTTTAAAAGAGTTAAT ATATTTCACATTATCAACACAAGAAATAAATCAGTATAATTCTATAATTAAAATGTATCA AGAATGGATACAAAAGGCTGCACCTTCTAAAAAATTGGTACATGAAAAGTATAAAGAAGC AGTGGTAAAATATAATGCTTCAGAAGTATATACCAAAATGAACGAATTTATTAATAAAAC TAAATGGGATAGTTTACGCAAGACACTAATAGTATTATGTCCATCTAT



consensusID : consensus_2411#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence
                              [AGAAGGCAGTGGTAAAATATAATGCTTCAGAAGTATATACCAAAATGAACGAATTTATTAATAAAACTAAATGGGATAGTTTACGCAAGACACTAATAGTATTATGTCCATCTATAGAAAGTTTCATTATAATGCGTGGAAATTTTATCACTTCATATGCTACTATGTGTATTGCGCATTGGATTTTAGGCATTGGAGATCGGCATTTGCAAAATACTGTAATCGTTATGGATTCAGGACGTTGTTTAGGTATCGATTTTGGGCTAGCTTTTGATGCTGGTGTTGATCAAAAAATACCAGAATTAATGCCTTTTCGTTTAACACCTCAAATTCTGGGTTTATTAAAACCTTTCACTGAAAAAGATCTTTTGAAAACAATAATCCATTCATGCTTTACGAGCGATGAGAAATGAACAAGGACCTATTCTTTCTTGCATGGATATTTTTGTTCATGAACCTTTAAATTGGACGGAAAACGTTAATGAAGCATTAAAAGAAAGTGAAGAAAATGTTACAAATATTGAATGGATACCA]

[-] EMBL BQ103756             [AGAAGGCAGTGGTAAAATATAATGCTTCAGAAGTATATACCAAAATGAACGAATTTATTAATAAAACTAAATGGGATAGTTTACGCAAGACACTAATAGTATTATGTCCATCTATAGAAAGTTTCATTATAATGCGTGGAAATTTTATCACTTCATATGCTACTATGTGTATTGCGCATTGGATTTTAGGCATTGGAGATCGGCATTTGCAAAATACTGTAATCGTTATGGATTCAGGACGTTGTTTAGGTATCGATTTTGGGCTAGCTTTTGATGCTGGTGTTGATCAAAAAATACCAGAATTAATGCCTTTTCGTTTAACACCTCAAATTCTGGGTTTATTAAAACCTTTCACTGAAAAAGATCTTTTGAAAACAATAATCCATTCATGCTTTACGAGCGATGAGAAATGAACAAGGACCTATTCTTTCTTGCATGGATATTTTTGTTCATGAACCTTTAAATTGGACGGAAAACGTTAATGAAGCATTAAAAGAAAGTGAAGAAAATGTTACAAATATTGAATGGATACCA]


>consensus_2411#1 AGAAGGCAGTGGTAAAATATAATGCTTCAGAAGTATATACCAAAATGAACGAATTTATTA ATAAAACTAAATGGGATAGTTTACGCAAGACACTAATAGTATTATGTCCATCTATAGAAA GTTTCATTATAATGCGTGGAAATTTTATCACTTCATATGCTACTATGTGTATTGCGCATT GGATTTTAGGCATTGGAGATCGGCATTTGCAAAATACTGTAATCGTTATGGATTCAGGAC GTTGTTTAGGTATCGATTTTGGGCTAGCTTTTGATGCTGGTGTTGATCAAAAAATACCAG AATTAATGCCTTTTCGTTTAACACCTCAAATTCTGGGTTTATTAAAACCTTTCACTGAAA AAGATCTTTTGAAAACAATAATCCATTCATGCTTTACGAGCGATGAGAAATGAACAAGGA CCTATTCTTTCTTGCATGGATATTTTTGTTCATGAACCTTTAAATTGGACGGAAAACGTT AATGAAGCATTAAAAGAAAGTGAAGAAAATGTTACAAATATTGAATGGATACCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2411#0      CAAACGTAAAGATAAGCTTAAATTGCAAGATTATAGTCCATGGTTTTGTAATTTTTTTGA 60
consensus_2411#1      ------------------------AGAAGGCAGTGGTAAA-----ATATAATGCTTCAGA 31
                                                ***    * **  *      * ****  **  **

consensus_2411#0      AAAAAACATAGAAATACCTGGTCAATATACTGGTAAAAGAAAACCTATGCCTCAATATCA 120
consensus_2411#1      AGTATATACCAAAATG---AACGAATTTATTAATAAAACTAAATGGGATAGTTTACGCAA 88
                      *  * * *   ****        *** ** *  *****  ***        *  *    *

consensus_2411#0      TGCAAAAATTATAAAGTTTGAATCTACTGTAAAAGTAATGCAATCA-ATACGGAAACCT- 178
consensus_2411#1      GACACTAATAGTATTATGTCCATCTATAG--AAAGTTTCATTATAATGCGTGGAAATTTT 146
                        **  ***  **   * *  *****  *  *****      ** *     *****  * 

consensus_2411#0      ---ATTCGAATTACTATGATTGGTAATGATGCAAAGGATTAT---CATTTTTTAGTAAAA 232
consensus_2411#1      ATCACTTCATATGCTACTATGTGTATTG-CGCATTGGATTTTAGGCATTGGAGATCGGCA 205
                         * *  *  * ***  **  *** **  ***  ***** *   ****    *     *

consensus_2411#0      TTTGGAGAAGATTTACGACAAGATCAAAGATTACAACAGTTATTTACTATTATGAACAAA 292
consensus_2411#1      TTTGCAAAATACT---GTAATCGTTATGGATTCAGGACGTTGTTTA--GGTATCGATTTT 260
                      **** * ** * *   *  *   * *  ****      *** ****    ***  *    

consensus_2411#0      ACTTTGTATATTAATGCAGCTTGTAGACAAAGACAATTACTTATTGATACTTATCAGGTG 352
consensus_2411#1      GGGCTAGCTTTTGATGCTGGTGTTGATCAAAAAATACCAGA-ATTAATGCCTTTTCG--- 316
                          *   * ** **** * *  *   **** *  *  *   *** ** * * *  *   

consensus_2411#0      ATTCCATTGTCTAAAACAATGGGTCTTATACAATGGATAGATAATACAAGATCTTTAAAA 412
consensus_2411#1      --TTTAACACCTCAAATTCTGGGTTTATTAAAACCTTTCACTGAAAAAGATCTTTTGAAA 374
                        *  *    ** ***   ***** *  ** **    *   * * * *     *** ***

consensus_2411#0      GAGTTAATATATTT-CACATTATCAAC-ACAAGAAATAAATCAGTATA-ATTCTATAATT 469
consensus_2411#1      ACAATAATCCATTCATGCTTTACGAGCGATGAGAAATGAACAAGGACCTATTCTTTCTTG 434
                          ****  ***    * ***  * * *  ****** **  ** *   ***** *  * 

consensus_2411#0      AAAATGTATCAAGAATGGATACAAAAGGCTGCACCTTCTAAAAAATTGGTACATGAAAAG 529
consensus_2411#1      CATGGATATT-----TTTGTTCATGAACCTTTAAATTGGACGGAAAACGTTAATGAAGCA 489
                       *    ***      *   * **  *  **  *  **  *   **   **  *****   

consensus_2411#0      TATAAAGAAGCAGTGGTAAAATATAATGCTTCAGAAGTATATACCAAAATGAACGAATTT 589
consensus_2411#1      TTAAAAGAAAGTGAAG-AAAATGTTACAAATATTGAATGGATACCA-------------- 534
                      *  ******   *  * ***** * *    *    * *  ******              

consensus_2411#0      ATTAATAAAACTAAATGGGATAGTTTACGCAAGACACTAATAGTATTATGTCCATCTAT 648
consensus_2411#1      -----------------------------------------------------------
                                                                                 




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)