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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2420#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence
[CAATCAAACGTGCAACGAAAATCCTGCGATTTAGGAGACGGATTGTGAAATTTCTTCGAAATATTCGCGACGTAGAGACGTGCTATAATACATTAACTGTTAATGATGGCACGATTCAATTTTCTTATGACCAGACACATGAGACTCGAAATATTTCCCGTTGGTTCAGGTTGAGGGCTACTTTATTCATACAGAATAAACAGCCCTTGCTTGCTTGTCGGCGCGTGATCCGAACGTTCTACGTCGGTGTTCTTTTTCTACCGTTTTTGAATCGCCGCTAGCGTGTTAATTAAACAAACAAACTGTGGCCGAGATAGTGTTAATCGGATACGGCACAAGAAAATCTGGAAAGGACGTGCGAGTCGATGAGAAGAAGGAGGCGGCGGAGGAGAAAGAGGCAGGAATTTAGNATCATCGAAAGATATGGAGAATAACGACGAAGCGCGCACTGTGGCTGATCGTGCGTCGACGTCAAAGGAGGAACCCTTGGAAGCCACTGCTGATGATGATTACGGCTGCGAGCACTATAAACGAAAATCCAA]
[+] EMBL BI504745 [CAATCAAACGTGCAACGAAAATCCTGCGATTTAGGAGACGGATTGTGAAATTTCTTCGAAATATTCGCGACGTAGAGACGTGCTATAATACATTAACTGTTAATGATGGCACGATTCAATTTTCTTATGACCAGACACATGAGACTCGAAATATTTCCCGTTGGTTCAGGTTGAGGGCTACTTTATTCATACAGAATAAACAGCCCTTGCTTGCTTGTCGGCGCGTGATCCGAACGTTCTACGTCGGTGTTCTTTTTCTACCGTTTTTGAATCGCCGCTAGCGTGTTAATTAAACAAACAAACTGTGGCCGAGATAGTGTTAATCGGATACGGCACAAGAAAATCTGGAAAGGACGTGCGAGTCGATGAGAAGAAGGAGGCGGCGGAGGAGAAAGAGGCAGGAATTTAGNATCATCGAAAGATATGGAGAATAACGACGAAGCGCGCACTGTGGCTGATCGTGCGTCGACGTCAAAGGAGGAACCCTTGGAAGCCACTGCTGATGATGATTACGGCTGCGAGCACTATAAACGAAAATCCAA]
consensusID : consensus_2420#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence
[TGATTACGGCTGCGAGCACTATAAACGAAAATCCAAATTTGTTACACCATGTTGCAACAAGGTATATACATGTCGATTCTGCCACGACAAAGAAGAGACTCATACAGTAAACAGAAAAGAAGTCACAGAACTGATATGCGTGTTATGTGATACTCGTCAGCCAGTACAAGCCACTTGCCAAAATTGTCATTGTCGATTCGGTAAATATACATGCCTCGAGTGTAATTTATTTGATGATGAGGACAAAAATCAGTATCATTGTGATGGCTGCGGAATATGTAGAGTCGGCGGTCGTGACCGATTTTTCCACTGTGCCAAGTGCAACATGTGTTTACCAGTTCAATTACAAAACGGACACACGTGTGTAGAAAATGTTTCTCATGCAAATTGTCCAGTTTGTCTTGAGGATATTCACACAAGTCGTAT]
[+] EMBL BI503351 [TGATTACGGCTGCGAGCACTATAAACGAAAATCCAAATTTGTTACACCATGTTGCAACAAGGTATATACATGTCGATTCTGCCACGACAAAGAAGAGACTCATACAGTAAACAGAAAAGAAGTCACAGAACTGATATGCGTGTTATGTGATACTCGTCAGCCAGTACAAGCCACTTGCCAAAATTGTCATTGTCGATTCGGTAAATATACATGCCTCGAGTGTAATTTATTTGATGATGAGGACAAAAATCAGTATCATTGTGATGGCTGCGGAATATGTAGAGTCGGCGGTCGTGACCGATTTTTCCACTGTGCCAAGTGCAACATGTGTTTACCAGTTCAATTACAAAACGGACACACGTGTGTAGAAAATGTTTCTCATGCAAATTGTCCAGTTTGTCTTGAGGATATTCACACAAGTCGTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2420#0 CAATCAAACGTGCAACGAAAATCCTGCGATTTAGGAGACGGATTGTGAAATTTCTTCGAA 60
consensus_2420#1 ------------------------------------------------------------
consensus_2420#0 ATATTCGCGACGTAGAGACGTGCTATAATACATTAACTGTTAATGATGGCACGATTCAAT 120
consensus_2420#1 --------------------TGAT-TACGGCTGCGAGCACTATAAACGAAA--ATCCAAA 37
** * ** * * ** * * * ** ***
consensus_2420#0 TTTCTTATGACCAGACACATGAGACTCGAAATATTTCCCGTTGGTTCAGGTTGAGGGCTA 180
consensus_2420#1 TTTGTTACACCATGTTGCAACAAGGTATATACATGTCGATTCTGCCACGACAAAGAAGAG 97
*** *** * * ** * * * * ** ** * * * **
consensus_2420#0 CTTTATTCA-TACAGAATAAACAGCCCTTGCTTGCTTGTCGGCGCGTGATCCGAACGTTC 239
consensus_2420#1 ACTCATACAGTAAACAGAAAAGAAGTCACAGA-ACTGATATGCGTGTTATGTGATACTCG 156
* ** ** ** * * *** * * ** * *** ** ** ** *
consensus_2420#0 TACGTCGGTGTTCTTTTTCTACCGTTTTTGAATCGCCGCTAGCGTGTTAATTAAACAAAC 299
consensus_2420#1 TCAGCCAGTACAAGCCACTTGCCA-----AAATTGTCATT-----GTCGATTCGGTAAAT 206
* * * ** * ** *** * * * ** *** ***
consensus_2420#0 AAACTGTGGCCGAGATAGTGTTAATCGGATACGGCACAAGAAAATCTGGAAAGGACGTGC 359
consensus_2420#1 ATAC-ATGCCTCGAGTGTAATTTATTTGATGATGAGGACAAAAATC-AGTATCATTGTGA 264
* ** ** * * ** ** *** * * ****** * * ***
consensus_2420#0 GAGTCGATGAGAAGAAGGAGGCGGCGGAGGAGAAAGAGGCAGGAATTTAGNATCATCGAA 419
consensus_2420#1 TGGCTGCGGAATATGTAGAGTCGGCGGTCGTGACCGATTTTTCCACTGTGC-CAAGTGCA 323
* * ** * *** ****** * ** ** * * * * * *
consensus_2420#0 AGATATGG-----AGAATAACGACGAAGCGCGCAC-TGTG-GCTGATCGTGCGTCGACGT 472
consensus_2420#1 ACATGTGTTTACCAGTTCAATTACAAAACGGACACACGTGTGTAGAAAATGTTTC----T 379
* ** ** ** ** ** ** ** *** *** * ** ** ** *
consensus_2420#0 CAAAGGAGGAACCCTTGGAAGCCACTGCTGATGATGATTACGGCTGCGAGCACTATAAAC 532
consensus_2420#1 CATGCAAATTGTCC-----AGTTTGTCTTGAGGATATTCACA----CAAGTCGTAT---- 426
** * ** ** * *** *** * ** * ** ***
consensus_2420#0 GAAAATCCAA 542
consensus_2420#1 ----------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |