Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 2425 cluster # 2425       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2425#0 length = 470 sequences # 1  
 consensus_2425#1 length = 395 sequences # 1  
consensusID : consensus_2425#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence 
                              [ACTGCTTATTAATATTTATAAGCGGTTGGTTAACGCTTCAAAGTGAATTCATAGTTTGTGAAGATCAGGCTACAGAAGATTTGCGTCTGAACAAATGCCGACATCGAATTTCCTCGTTATTTCTTGTGTTTTGCCAATTTTTTAAACAATCGCGAGTGCCGGAACGCGCATTGAACTTACTGAATTAGATATATACGTACAGATAGTAGTATTACTGTATATTATATCGGTGAAATTTTGGAAAAGAAGAAAAAGATGGTGCGTGGTCTGTCGCAGTGGACGAAAACCTTGAGCTTCCCTGCGAGGGTGTCCCCCCAGAGGCCTGCCAAGGAGTCGAAAGGGTTTCATGTGAGCCCCAGTGCTAGTCCCACATCGCCACCCAGCCCTATCAACGACAACATGGACAAGGCGCCGATTATTACCGATGAGATAACGGTCTGTTGCTATACGCTTCAAGCAACCATGGTTTA]

[+] EMBL BI503340             [ACTGCTTATTAATATTTATAAGCGGTTGGTTAACGCTTCAAAGTGAATTCATAGTTTGTGAAGATCAGGCTACAGAAGATTTGCGTCTGAACAAATGCCGACATCGAATTTCCTCGTTATTTCTTGTGTTTTGCCAATTTTTTAAACAATCGCGAGTGCCGGAACGCGCATTGAACTTACTGAATTAGATATATACGTACAGATAGTAGTATTACTGTATATTATATCGGTGAAATTTTGGAAAAGAAGAAAAAGATGGTGCGTGGTCTGTCGCAGTGGACGAAAACCTTGAGCTTCCCTGCGAGGGTGTCCCCCCAGAGGCCTGCCAAGGAGTCGAAAGGGTTTCATGTGAGCCCCAGTGCTAGTCCCACATCGCCACCCAGCCCTATCAACGACAACATGGACAAGGCGCCGATTATTACCGATGAGATAACGGTCTGTTGCTATACGCTTCAAGCAACCATGGTTTA]




>consensus_2425#0
ACTGCTTATTAATATTTATAAGCGGTTGGTTAACGCTTCAAAGTGAATTCATAGTTTGTG
AAGATCAGGCTACAGAAGATTTGCGTCTGAACAAATGCCGACATCGAATTTCCTCGTTAT
TTCTTGTGTTTTGCCAATTTTTTAAACAATCGCGAGTGCCGGAACGCGCATTGAACTTAC
TGAATTAGATATATACGTACAGATAGTAGTATTACTGTATATTATATCGGTGAAATTTTG
GAAAAGAAGAAAAAGATGGTGCGTGGTCTGTCGCAGTGGACGAAAACCTTGAGCTTCCCT
GCGAGGGTGTCCCCCCAGAGGCCTGCCAAGGAGTCGAAAGGGTTTCATGTGAGCCCCAGT
GCTAGTCCCACATCGCCACCCAGCCCTATCAACGACAACATGGACAAGGCGCCGATTATT
ACCGATGAGATAACGGTCTGTTGCTATACGCTTCAAGCAACCATGGTTTA

consensusID : consensus_2425#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence 
                              [CACCGATATATACGTACAGATAGTAGTATTACTGTATATTATATCGGTGAAATTTTGGAAAAGAAGAAAAAGATGGTGCGTGGTCTGTCGCAGTGGACGAAAACCTTGAGCTTCCCTGCGAGGGTGTCCCCCCAGAGGCCTGCCAAGGAGTCGAAAGGGTTTCATGTGAGCCCCAGTGCTAGTCCCACANCGCCACCCAGCCCTATCAACGACAACATGGACAAGGCGCCGATTATTACCGATGAGGTTAGAATCTCACTTTTTTTATTCTAACATATTTATCGTGGTTAATGGTAATGCTTTTTGGAAATTTAATCTATATTATATTAATGATGATTGATTTCATAAGAGAGAAAAATAATGGTAGATTGTGTAATTCTTTGTATATGTAAAAA]

[+] EMBL BI508871             [CACCGATATATACGTACAGATAGTAGTATTACTGTATATTATATCGGTGAAATTTTGGAAAAGAAGAAAAAGATGGTGCGTGGTCTGTCGCAGTGGACGAAAACCTTGAGCTTCCCTGCGAGGGTGTCCCCCCAGAGGCCTGCCAAGGAGTCGAAAGGGTTTCATGTGAGCCCCAGTGCTAGTCCCACANCGCCACCCAGCCCTATCAACGACAACATGGACAAGGCGCCGATTATTACCGATGAGGTTAGAATCTCACTTTTTTTATTCTAACATATTTATCGTGGTTAATGGTAATGCTTTTTGGAAATTTAATCTATATTATATTAATGATGATTGATTTCATAAGAGAGAAAAATAATGGTAGATTGTGTAATTCTTTGTATATGTAAAAA]




>consensus_2425#1
CACCGATATATACGTACAGATAGTAGTATTACTGTATATTATATCGGTGAAATTTTGGAA
AAGAAGAAAAAGATGGTGCGTGGTCTGTCGCAGTGGACGAAAACCTTGAGCTTCCCTGCG
AGGGTGTCCCCCCAGAGGCCTGCCAAGGAGTCGAAAGGGTTTCATGTGAGCCCCAGTGCT
AGTCCCACANCGCCACCCAGCCCTATCAACGACAACATGGACAAGGCGCCGATTATTACC
GATGAGGTTAGAATCTCACTTTTTTTATTCTAACATATTTATCGTGGTTAATGGTAATGC
TTTTTGGAAATTTAATCTATATTATATTAATGATGATTGATTTCATAAGAGAGAAAAATA
ATGGTAGATTGTGTAATTCTTTGTATATGTAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2425#0      ACTGCTTATTAATATTTATAAGCGGTTGGTTAACGCTTCAAAGTGAATTCATAGTTTGTG 60
consensus_2425#1      ------------------------------------------------------------
                                                                                  

consensus_2425#0      AAGATCAGGCTACAGAAGATTTGCGTCTGAACAAATGCCGACATCGAATTTCCTCGTTAT 120
consensus_2425#1      ------------------------------------------------------------
                                                                                  

consensus_2425#0      TTCTTGTGTTTTGCCAATTTTTTAAACAATCGCGAGTGCCGGAACGCGCATTGAACTTAC 180
consensus_2425#1      ------------------------------------------------------------
                                                                                  

consensus_2425#0      TGAATTAGATATATACGTACAGATAGTAGTATTACTGTATATTATATCGGTGAAATTTTG 240
consensus_2425#1      ---CACCGATATATACGTACAGATAGTAGTATTACTGTATATTATATCGGTGAAATTTTG 57
                             *****************************************************

consensus_2425#0      GAAAAGAAGAAAAAGATGGTGCGTGGTCTGTCGCAGTGGACGAAAACCTTGAGCTTCCCT 300
consensus_2425#1      GAAAAGAAGAAAAAGATGGTGCGTGGTCTGTCGCAGTGGACGAAAACCTTGAGCTTCCCT 117
                      ************************************************************

consensus_2425#0      GCGAGGGTGTCCCCCCAGAGGCCTGCCAAGGAGTCGAAAGGGTTTCATGTGAGCCCCAGT 360
consensus_2425#1      GCGAGGGTGTCCCCCCAGAGGCCTGCCAAGGAGTCGAAAGGGTTTCATGTGAGCCCCAGT 177
                      ************************************************************

consensus_2425#0      GCTAGTCCCACATCGCCACCCAGCCCTATCAACGACAACATGGACAAGGCGCCGATTATT 420
consensus_2425#1      GCTAGTCCCACANCGCCACCCAGCCCTATCAACGACAACATGGACAAGGCGCCGATTATT 237
                      ************ ***********************************************

consensus_2425#0      ACCGATGAGATAACGGTCTGTTGCTATACGCTTCAAG----CAACCATGGTTTA------ 470
consensus_2425#1      ACCGATGAGGTTAGAATCTCACTTTTTTTATTCTAACATATTTATCGTGGTTAATGGTAA 297
                      ********* * *   ***     * *    *  **       * * ***** *      

consensus_2425#0      ------------------------------------------------------------
consensus_2425#1      TGCTTTTTGGAAATTTAATCTATATTATATTAATGATGATTGATTTCATAAGAGAGAAAA 357
                                                                                  

consensus_2425#0      --------------------------------------
consensus_2425#1      ATAATGGTAGATTGTGTAATTCTTTGTATATGTAAAAA 395


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)