These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_244#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 583 fasta sequence [TTCCCGGTCGTTAATTATTTAAATAGTTTCAAAGAACGTGCGAATATATTGAAATAAACACTTCTGCAAAATGAATATGTCAGTGGAAAAAAAGAAATATCCATCGGCACTGCCAACAAATTGGCCGTCCAGAGAAGAGGCTTCGAGAAAAAGCCAAAATCAATTGTCATCTACTGGAAAAGTTGACGTTTATTATTACAGTCGCGGAGTCAGAAATGATGCATCGTTAGTACCACCGATAAGACAAACAGCATCTATATTTAAGCAACCAGTAACTATTTATAAGACGCAGGAAGGAAAAGTAAAAGATATTAAGCATGGAAATCAAGAAAAACCCAAACAAGAAGGAGCCGATAAAATTGATGGCAAATATGGCTCCCAAGATAAGCCTAAACAGTTATTTTGGGAAAAACGTTTGGAAGGTTTAAGAGCATGTGATCCAGACGGAATTGAATTCGATGGAATGGATTTACCAAAAAGTTTGAAGCCAGTTGGTCCGTATATTACGGAAGAAACTTTGCTTCAAAGCGTTGCAACTGCATTACACGTTTCGTCTCAACCAGTCACGGGACAAACGGGCCGT] [+] EMBL BI509991 [TTCCCGGTCGTTAATTATTTAAATAGTTTCAAAGAACGTGCGAATATATTGAAATAAACACTTCTGCAAAATGAATATGTCAGTGGAAAAAAAGAAATATCCATCGGCACTGCCAACAAATTGGCCGTCCAGAGAAGAGGCTTCGAGAAAAAGCCAAAATCAATTGTCATCTACTGGAAAAGTTGACGTTTATTATTACAGTCGCGGAGTCAGAAATGATGCATCGTTAGTACCACCGATAAGACAAACAGCATCTATATTTAAGCAACCAGTAANTATTTATAAGACGCAGGAAGGAAAAGTAAAAGATATTAAGCATGGAAATCAAGAAAAACCCAAACAAGAAGGAGCCGATAAAATTGATGGCAAATATGGCTCCCAAGATAAGCCTAAACAGTTATTTTGGGAAAAACGTTTGGAAGGTTTAAGAGCATGTGATCCAGACGGAATTGAATTCGATGGAATGGATTTACCAAAAAGTTTGAAGCCAGTTGGTCCGTATATTACGGAAGAAACTTTGCTTCAAAGCGTTGCAACTGCATTACACGTTTCGTCTC ] [+] EMBL BI514194 [ AAATAGTTTCAAAGAACGTGCGAATATATTGAAATAAACACTTCTGCAAAATGAATATGTCAGTGGAAAAAAAGAAATATCCATCGGCACTGCCAACAAATTGGCCGTCCAGAGAAGAGGCTTCGAGAAAAAGCCAAAATCAATTGTCATCTACTGGAAAAGTTGACGTTTATTATTACAGTCGCGGAGTCAGAAATGATGCATCGTTAGTACCACCGATAAGACAAACAGCATCTATATTTAAGCAACCAGTAACTATTTATAAGACGCAGGAAGGAAAAGTAAAAGATATTAAGCATGGAAATCAAGAAAAACCCAAACAAGAAGGAGCCGATAAAATTGATGGCAAATATGGCTCCCAAGATAAGCCTAAACAGTTATTTTG ] [+] EMBL BI509183 [ GTCAGTGGAAAAAAAGAAATATCCATCGGCACTGCCAACAAATTGGCCGTCCAGAGAAGAGGCTTCGAGAAAAAGCCAAAATCAATTGTCATCTACTGGAAAAGTTGACGTTTATTATTACAGTCGCGGAGTCAGAAATGATGCATCGTTAGTACCACCGATAAGACAAACAGCATCTATATTTAAGCAACCAGTAACTATTTATAAGACGCAGGAAGGAAAAGTAAAAGATATTAAGCATGGAAATCAAGAAAAACCCAAACAAGAAGGAGCCGATAAAATTGATGGCAAATATGGCTCCCAAGATAAGCCTAAACAGTTATTTTGGGAAAAACGTTTGGAAGGTTTAAGAGCATGTGATCCAGACGGATTTGAATTCGATGGAATGGATTTACCAAAAAGTTTGAAGCCAGTTGGTCCGTATATTACGGAAGAAACTTTGCTTCAAAGCGTTGCAACTGCATTACACGTTTCGTCTCAACCAGTCACGGGACAAACGGGCCGT] consensusID : consensus_244#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 568 fasta sequence [GGTCGTTAATTATTTAAATAGTTTCAAAGAACGTGCGAATATATTGAAATAAACACTTCTGCAAAATGAATATGTCAGTGGAAAAAAAGAAATATCCATCGGCACTGCCAACAAATTGGCCGTCCAGAGAAGAGGCTTCGAGAAAAAGCCAAAATCAATTGTCATCTACTGGAAAAGTTGACGTTTATTATTACAGTCGCGGAGTCAGAAATGATGCATCGTTAGTACCACCGATAAGACAAACAGCATCTATATTTAAGCAACCAGTAACTATTTATAAGACGCAGGAAGGAAAAGTAAAAGATATTAAGCATGGAAATCAAGAAAAACCCAAACAATTATTTTGGGAAAAACGTTTGGAAGGTTTAAGAGCATGTGATCCAGACGGATTTGAATTCGATGGAATGGATTTACCAAAAAGTTTGAAGCCAGTTGGTCCGTATATTACGGAAGAAACTTTGCTTCAAAGCGTTGCAACTGCATTACACGTTTCGTCTCAACCAGTCACGGGACAAACGGGTTCGAAGACAGCTTTAGAGAAAAATCCCGGGGTATTTCTTAATCCCGA] [+] EMBL BI510974 [GGTCGTTAATTATTTAAATAGTTTCAAAGAACGTGCGAATATATTGAAATAAACACTTCTGCAAAATGAATATGTCAGTGGAAAAAAAGAAATATCCATCGGCACTGCCAACAAATTGGCCGTCCAGAGAAGAGGCTTCGAGAAAAAGCCAAAATCAATTGTCATCTACTGGAAAAGTTGACGTTTATTATTACAGTCGCGGAGTCAGAAATGATGCATCGTTAGTACCACCGATAAGACAAACAGCATCTATATTTAAGCAACCAGTAACTATTTATAAGACGCAGGAAGGAAAAGTAAAAGATATTAAGCATGGAAATCAAGAAAAACCCAAACAATTATTTTGGGAAAAACGTTTGGAAGGTTTAAGAGCATGTGATCCAGACGGATTTGAATTCGATGGAATGGATTTACCAAAAAGTTTGAAGCCAGTTGGTCCGTATATTACGGAAGAAACTTTGCTTCAAAGCGTTGCAACTGC ] [+] EMBL BI514619 [ TGCAAAATGAATATGTCAGTGGAAAAAAAGAAATATCCATCGGCACTGCCAACAAATTGGCCGTCCAGAGAAGAGGCTTCGAGAAAAAGCCAAAATCAATTGTCATCTACTGGAAAAGTTGACGTTTATTATTACAGTCGCGGAGTCAGAAATGATGCATCGTTAGTACCACCGATAAGACAAACAGCATCTATATTTAAGCAACCAGTAACTATTTATAAGACGCAGGAAGGAAAAGTAAAAGATATTAAGCATGGAAATCAAGAAAAACCCAAACAATTATTTTGGGAAAAACGTTTGGAAGGTTTAAGAGCATGTGATCCAGACGGATTTGAATTCGATGGAATGGATTTACCAAAAAGTTTGAAGCCAGTTGGTCCGTATATTACGGAAGAAACTTTGCTTCAAAGCGTTGCAACTGCATTACACGTTTCGTCTCAACCAGTCACGGGACAAACGGGTTCGAAGACAGCTTTAGAGAAAAATCCCGGGGTATTTCTTAATCCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_244#0 TTCCCGGTCGTTAATTATTTAAATAGTTTCAAAGAACGTGCGAATATATTGAAATAAACA 60 consensus_244#1 -----GGTCGTTAATTATTTAAATAGTTTCAAAGAACGTGCGAATATATTGAAATAAACA 55 ******************************************************* consensus_244#0 CTTCTGCAAAATGAATATGTCAGTGGAAAAAAAGAAATATCCATCGGCACTGCCAACAAA 120 consensus_244#1 CTTCTGCAAAATGAATATGTCAGTGGAAAAAAAGAAATATCCATCGGCACTGCCAACAAA 115 ************************************************************ consensus_244#0 TTGGCCGTCCAGAGAAGAGGCTTCGAGAAAAAGCCAAAATCAATTGTCATCTACTGGAAA 180 consensus_244#1 TTGGCCGTCCAGAGAAGAGGCTTCGAGAAAAAGCCAAAATCAATTGTCATCTACTGGAAA 175 ************************************************************ consensus_244#0 AGTTGACGTTTATTATTACAGTCGCGGAGTCAGAAATGATGCATCGTTAGTACCACCGAT 240 consensus_244#1 AGTTGACGTTTATTATTACAGTCGCGGAGTCAGAAATGATGCATCGTTAGTACCACCGAT 235 ************************************************************ consensus_244#0 AAGACAAACAGCATCTATATTTAAGCAACCAGTAACTATTTATAAGACGCAGGAAGGAAA 300 consensus_244#1 AAGACAAACAGCATCTATATTTAAGCAACCAGTAACTATTTATAAGACGCAGGAAGGAAA 295 ************************************************************ consensus_244#0 AGTAAAAGATATTAAGCATGGAAATCAAGAAAAACCCAAACAAGAAGGAGCCGATAAAAT 360 consensus_244#1 AGTAAAAGATATTAAGCATGGAAATCAAGAAAAACCCAAACAA----------------- 338 ******************************************* consensus_244#0 TGATGGCAAATATGGCTCCCAAGATAAGCCTAAACAGTTATTTTGGGAAAAACGTTTGGA 420 consensus_244#1 -------------------------------------TTATTTTGGGAAAAACGTTTGGA 361 *********************** consensus_244#0 AGGTTTAAGAGCATGTGATCCAGACGGAATTGAATTCGATGGAATGGATTTACCAAAAAG 480 consensus_244#1 AGGTTTAAGAGCATGTGATCCAGACGGATTTGAATTCGATGGAATGGATTTACCAAAAAG 421 **************************** ******************************* consensus_244#0 TTTGAAGCCAGTTGGTCCGTATATTACGGAAGAAACTTTGCTTCAAAGCGTTGCAACTGC 540 consensus_244#1 TTTGAAGCCAGTTGGTCCGTATATTACGGAAGAAACTTTGCTTCAAAGCGTTGCAACTGC 481 ************************************************************ consensus_244#0 ATTACACGTTTCGTCTCAACCAGTCACGGGACAAACGGGCCGT----------------- 583 consensus_244#1 ATTACACGTTTCGTCTCAACCAGTCACGGGACAAACGGGTTCGAAGACAGCTTTAGAGAA 541 *************************************** consensus_244#0 --------------------------- consensus_244#1 AAATCCCGGGGTATTTCTTAATCCCGA 568 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |