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Apis mellifera
cluster # 249 cluster # 249       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_249#0 length = 514 sequences # 4  
 consensus_249#1 length = 271 sequences # 1  
consensusID : consensus_249#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 514
fasta sequence 
                              [GCAACTAATCGAACGTATTTTCCTTGTTGAGCGTGTACCACGTTTCGTGTCGTAAGACTTAAAGAATGCGTTACGTGGCCGCTTATCTTTTAGCTGTTTTAGGAGGAAAAACTTCTCCTAATCAAAATGATATTGAAAAAATTTTATCATCTGTTGGAATTGAAACAGATGGTGAAAAACTTAAAAAAGTTATCGCAGAACTAAATGGAAAATCAATTGAAGAACTTATTTCGCAAGGAATGGAAAAATTATTATCTATGCCAGTTGGTGGTGGTGTTGCAGTTAGTGCAGATGCTGCACCAGTTGGAGGTACTACTGCTCCAGCTGAAGAAAAGAAAGAAGAAAAGAAACCAGCAAAAGAAGAATCTGAATCAGAAGATGATGATATGGGTTTCGGTCTTTTCGATTAAATAATTCATAATAATATCTNNATAATAACTATTTGTAAAATCTATATTATACAGTTTTGACAAGATTATTCGAAATAAATTATATTTTTAATTTNNNAAAAAAA]

[+] EMBL BI515438             [GCAACTAATCGAACGTATTTTCCTTGTTGAGCGTGTACCACGTTTCGTGTCGTAAGACTTAAAGAATGCGTTACGTGGCCGCTTATCTTTTAGCTGTTTTAGGAGGAAAAACTTCTCCTAATCAAAATGATATTGAAAAAATTTTATCATCTGTTGGAATTGAAACAGATGGTGAAAAACTTAAAAAAGTTATCGCAGAACTAAATGGAAAATCAATTGAAGAACTTATTTCGCAAGGAATGGAAAAATTATTATCTATGCCAGTTGGTGGTGGTGTTGCAGTTAGTGCAGATGCTGCACCAGTTGGAGGTACTACTGCTCCAGCTGAAGAAAAGAAAGAAGAAAAGAAACCAGCAAAAGAAGAATCTGAATCAGAAGATGATGATATGGGTTTCGGTCTTTTCGATTAAATAATTCATAATAATATCTNNATAATAACTATTTGTAAAATCTATATTATACAGTTTTGACAAGATTATTCGAAATAAA                         ]
[+] EMBL BG101667             [                                             CGTGTCGTAAGACTTAAAGAATGCGTTACGTGGCCGCTTATCTTTTAGCTGTTTTAGGAGGAAAAACTTCTCCTAATCAAAATGATATTGAAAAAATTTTATCATCTGTTGGAATTGAAACAGATGGTGAAAAACTCAAAAAAGTTATCGCAGAACTAAATGGAAAATCAATTGAAGAACTTATTTCGCAAGGAATGGAAAAATTATTATCTATGCCAGTTGGTGGTGGTGTTGCAGTTAGTGCAGA                                                                                                                                                                                                                              ]
[+] EMBL BG101668             [                                               TGTCGTAAGACTTAAAGAATGCGTTACGTGGCCGCTTATCTTTTAGCTGTTTTAGGAGGAAAAACTTCTCCTAATCAAAATGATATTGAAAAAATTTTATCATCTGTTGGAATTGAAACAGATGGTGAAAAACTTAAAAAAGTTATCGCAGAACTAAATGGAAAATCAATTGAAGAACTTATTTCGCAAGGAATGGAAAAATTATTATCTATGCCAGTTGGTGGTGGTG TGCAGTTAGTGCAGAT                                                                                                                                                                                                                             ]
[+] EMBL BI510594             [                                                            AAAGAATGCGTTACGTGGCCGCTTATCTTTTAGCTGTTTTAGGAGGAAAAACTTCTCCTAATCAAAATGATATTGAAAAAATTTTATCATCTGTTGGAATTGAAACAGATGGTGAAAAACTTAAAAAAGTTATCGCAGAACTAAATGGAAAATCAATTGAAGAACTTATTTCGCAAGGAATGGAAAAATTATTATCTATGCCAGTTGGTGGTGGTGTTGCAGTTAGTGCAGATGCTGCACCAGTTGGAGGTACTACTGCTCCAGCTGAAGAAAAGAAAGAAGAAAAGAAACCAGCAAAAGAAGAATCTGAATCAGAAGATGATGATATGGGTTTCGGTCTTTTCGATTAAATAATTCATAATAATATCTGTATAATAACTATTTGTAAAATCTATATTATACAGTTTTGACAAGATTATTCGAAATAAATTATATTTTTAATTTNNNAAAAAAA]




>consensus_249#0
GCAACTAATCGAACGTATTTTCCTTGTTGAGCGTGTACCACGTTTCGTGTCGTAAGACTT
AAAGAATGCGTTACGTGGCCGCTTATCTTTTAGCTGTTTTAGGAGGAAAAACTTCTCCTA
ATCAAAATGATATTGAAAAAATTTTATCATCTGTTGGAATTGAAACAGATGGTGAAAAAC
TTAAAAAAGTTATCGCAGAACTAAATGGAAAATCAATTGAAGAACTTATTTCGCAAGGAA
TGGAAAAATTATTATCTATGCCAGTTGGTGGTGGTGTTGCAGTTAGTGCAGATGCTGCAC
CAGTTGGAGGTACTACTGCTCCAGCTGAAGAAAAGAAAGAAGAAAAGAAACCAGCAAAAG
AAGAATCTGAATCAGAAGATGATGATATGGGTTTCGGTCTTTTCGATTAAATAATTCATA
ATAATATCTNNATAATAACTATTTGTAAAATCTATATTATACAGTTTTGACAAGATTATT
CGAAATAAATTATATTTTTAATTTNNNAAAAAAA

consensusID : consensus_249#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence 
                              [TNATAAGCGGTGGTNGCGGCCGAGGTCACGTTTCGTGTNGTAAGACTTAAAGANTGCGTTACGTGGCCGCTTATCTTTTAGCTGTTTTAGGAGGAAAAACTTCTCCTAATCAAAATGATATTGAAAAAATTTTATCATCTGTTGGAATTGAAACAGATGGTGAAAAACTTAAAAAAGTTATCGCAGAACTNAATGGAAAATCAATTGAAGAACTTATTTCGCAAGGAATGGAAAAATTATTATCTATGCCAGTTGGTGGTGGTGTTGCAGT]

[+] EMBL BG101669             [TNATAAGCGGTGGTNGCGGCCGAGGTCACGTTTCGTGTNGTAAGACTTAAAGANTGCGTTACGTGGCCGCTTATCTTTTAGCTGTTTTAGGAGGAAAAACTTCTCCTAATCAAAATGATATTGAAAAAATTTTATCATCTGTTGGAATTGAAACAGATGGTGAAAAACTTAAAAAAGTTATCGCAGAACTNAATGGAAAATCAATTGAAGAACTTATTTCGCAAGGAATGGAAAAATTATTATCTATGCCAGTTGGTGGTGGTGTTGCAGT]




>consensus_249#1
TNATAAGCGGTGGTNGCGGCCGAGGTCACGTTTCGTGTNGTAAGACTTAAAGANTGCGTT
ACGTGGCCGCTTATCTTTTAGCTGTTTTAGGAGGAAAAACTTCTCCTAATCAAAATGATA
TTGAAAAAATTTTATCATCTGTTGGAATTGAAACAGATGGTGAAAAACTTAAAAAAGTTA
TCGCAGAACTNAATGGAAAATCAATTGAAGAACTTATTTCGCAAGGAATGGAAAAATTAT
TATCTATGCCAGTTGGTGGTGGTGTTGCAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_249#0      GCAACTAATCGAACGTATTTTCCTTGTTGAGCGTGTACCACGTTTCGTGTCGTAAGACTT 60
consensus_249#1      -----TNATAAGCGGTGGTNGCG--GCCGAG-----GTCACGTTTCGTGTNGTAAGACTT 48
                          * **     **  *  *   *  ***       ************ *********

consensus_249#0      AAAGAATGCGTTACGTGGCCGCTTATCTTTTAGCTGTTTTAGGAGGAAAAACTTCTCCTA 120
consensus_249#1      AAAGANTGCGTTACGTGGCCGCTTATCTTTTAGCTGTTTTAGGAGGAAAAACTTCTCCTA 108
                     ***** ******************************************************

consensus_249#0      ATCAAAATGATATTGAAAAAATTTTATCATCTGTTGGAATTGAAACAGATGGTGAAAAAC 180
consensus_249#1      ATCAAAATGATATTGAAAAAATTTTATCATCTGTTGGAATTGAAACAGATGGTGAAAAAC 168
                     ************************************************************

consensus_249#0      TTAAAAAAGTTATCGCAGAACTAAATGGAAAATCAATTGAAGAACTTATTTCGCAAGGAA 240
consensus_249#1      TTAAAAAAGTTATCGCAGAACTNAATGGAAAATCAATTGAAGAACTTATTTCGCAAGGAA 228
                     ********************** *************************************

consensus_249#0      TGGAAAAATTATTATCTATGCCAGTTGGTGGTGGTGTTGCAGTTAGTGCAGATGCTGCAC 300
consensus_249#1      TGGAAAAATTATTATCTATGCCAGTTGGTGGTGGTGTTGCAGT----------------- 271
                     *******************************************                 

consensus_249#0      CAGTTGGAGGTACTACTGCTCCAGCTGAAGAAAAGAAAGAAGAAAAGAAACCAGCAAAAG 360
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      AAGAATCTGAATCAGAAGATGATGATATGGGTTTCGGTCTTTTCGATTAAATAATTCATA 420
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      ATAATATCTNNATAATAACTATTTGTAAAATCTATATTATACAGTTTTGACAAGATTATT 480
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      CGAAATAAATTATATTTTTAATTTNNNAAAAAAA 514
consensus_249#1      ----------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)