These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_251#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 858 fasta sequence [GCATGGAGGTTTATTGCTTAAACAACCTCAGCAGGTCTCTGTCCACCCACAACTCTGTGATTCTTAGATAAGTAATCTGCGAATTCTTGATATGGTGCTTTTCTTAATGCTTGATCATGCCAGAGATCTGGTGTTAAATATGCATAAGTTTTGGCAATAGCAGCATAAGTAGCCTTAGCAAAATTGCCAAGAGTACATGTGGATCCTCTAGCCGAAGTATAGCAATCCTCAATACCAGCCATTTGTAATAGTTTTTTAGGCACAGGAGCTGAAACAATACCTGTACCTCTTGGTGCTGGAATTAGACGCACCTGAACAGATCCACACTTGCCAGTAACTTTACAGGGCACTGTATGAGGATCACCAATTTTATTTCCCCAATAACCACGGCGTACTGGCACAACTGAAAGTTTAGCCAAAATGATAGCACCACGGATAGCAGTAGCTACTTCCTTAGAACATTTTACGCCTAAACCAATATGACCTTTGTAGTCACCAATAGCTACAAAAGCCTTGAAACGAGTACGTTGACCAGCTCTAGTCTGTTTTTGTACAGGCATAATTTTTAATACTTCATCTTTCAATTCAACACCAAGAAATTTATCAATAATTTCATATTCTTTGATTGGTAAAGAAAAAAGATAAATATGTTCCAAGGATTCAATTTTTCCATCTCTAACAAGACGTCCAAGTTTAGTCACTGGAATCCATTCTTTACTGTCTTCTTTACCACGTCCACGACCACGACCTCGTCCTCTACCTCCACGACCTCTACCTCTTGGACCTCCACGATCACCTCCTCCACGAGAACCAAATCCTCCACGAAAACCTCCACGCGCGGCTGGAGCAGTGTCCGCC] [+] EMBL BI507047 [GCATGGAGGTTTATTGCTTAAACAACCTCAGCAGGTCTCTGTCCACCCACAACTCTGTGATTCTTAGATAAGTAATCTGCGAATTCTTGATATGGTGCTTTTCTTAATGCTTGATCATGCCAGAGATCTGGTGTTAAATATGCATAAGTTTTGGCAATAGCAGCATAAGTAGCCTTAGCAAAATTGCCAAGAGTACATGTGGATCCTCTAGCCGAAGTATAGCAATCCTCAATACCAGCCATTTGTAATAGTTTTTTAGGCACAGGAGCTGAAACAATACCTGTACCTCTTGGTGCTGGAATTAGACGCACCTGAACAGATCCACACTTGCCAGTAACTTTACAGGGCACTGTATGAGGATCACCAATTTTATTTCCCCAATAACCACGGCGTACTGGCACAACTGAAAGTTTAGCCAAAATGATAGCACCACGGATAGCAGTAGCTACTTCCTTAGAACATTTTACGCCTAAACCAATATGACCTTTGTAGTCACCAATAGCTACAAAAGCCTTGAAACGAGTACGTTGACCAGCTCTAGTCTGTTTTTGTACAGGCATAATTTTTAATACTTCATCTTTCAATTCAACACCAAGAAATTTATCAATAATTTCATATTCTTTGATTGGTAAAAAAAAAA ] [-] EMBL BI509351 [ CTTAATGCTTGATCATGCCAGAGATCTGGTGTTAAATATGCATAAGTTTTGGCAATAGCAGCATAAGTAGCCTTAGCAAAATTGCCAAGAGTACATGTGGATCCTCTAGCCGAAGTATAGCAATCCTCAATACCAGCCATTTGTAATAGTTTTTTAGGCACAGGAGCTGAAACAATACCTGTACCTCTTGGTGCTGGAATTAGACGCACCTGAACAGATCCACACTTGCCAGTAACTTTACAGGGCACTGTATGAGGATCACCAATTTTATTTCCCCAATAACCACGGCGTACTGGCACAACTGAAAGTTTAGCCAAAATGATAGCACCACGGATAGCAGTAGCTACTTCCTTAGAACATTTTACGCCTAAACCAATATGACCTTTGTAGTCACCAATAGCTACAAAAGCCTTGAAACGAGTACGTTGACCAGCTCTAGTCTGTTTTTGTACAGGCATAATTTTTAATACTTCATCTTTCAATTCAACACCAAGAAATTTATCAATA ] [-] EMBL BI946502 [ ATCACCAATTTTATTTCCCCAATAACCACGGCGTACTGGCACAACTGAAAGTTTAGCCAAAATGATAGCACCACGGATAGCAGTAGCTACTTCCTTAGAACATTTTACGCCTAAACCAATATGACCTTTGTAGTCACCAATAGCTACAAAAGCCTTGAAACGAGTACGTTGACCAGCTCTAGTCTGTTTTTGTACAGGCATAATTTTTAATACTTCATCTTTCAATTCAACACCAAGAAATTTATCAATAATTTCATATTCTTTGATTGGTAAAGAAAAAAGATAAATATGTTCCAAGGATTCAATTTTTCCATCTCTAACAAGACGTCCAAGTTTAGTCACTGGAATCCATTCTTTACTGTCTTCTTTACCACGTCCACGACCACGACCTCGTCCTCTACCTCCACGACCTCTACCTCTTGGACCTCCACGATCACCTCCTCCACGAGAACCAAATCCTCCACGAAAACCTCCACGCGCGGCTGGAGCAGTGTCCGCC] [-] EMBL BI512623 [ CCTTGAAACGAGTACGTTGACCAGCTCTAGTCTGTTTTTGTACAGGCATAATTTTTAATACTTCATCTTTCAATTCAACACCAAGAAATTTATCAATAATTTCATATTCTTTGATTGGTAAAGAAAAAAGATAAATATGTTCCAAGGATTCAATTTTTCCATCTCTAACAAGACGTCCAAGTTTAGTCACTGGAATCCATTCTTTACTGTCTTCTTT ] consensusID : consensus_251#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [TCTGCCACTTGANNGCACNACGGTTAGGAGTCATGCCTNCCCTTNGAACNTTTNACGCCTNANCCANTNTGACCTTNGTNGTNNTCANTNTCGTANAAAAGNCTTGAACACGAGGACANCATGACCACGNGCTACNGNNGANCTCGNACANGGACTAACTTGCTNACTAACTTGCGTGCTTTCTGTTNTACACNGAGAAATNAATCTGNCCTGNTCATNGTTCTNNGGGAGNAANACTAANGNATGATAGNTGTGTTACCATGGGTCNNAANCTTNCNTCTNTAACAAGACGTCCAAGTTTAGTCACTGGAATCCATTCTTTACTGTCTTCTTTACCACGTNCACNACCACGACCTCGTGCTCTACCTCCACGACCTCTACCTNTTGGACCTCCACGATCACCTCCTNCACGAGAACCAAATCCTCCACGAAAACCTCCNCGCGCGGCTGGAGCAGNGTCCGCCA] [+] EMBL BG101649 [TCTGCCACTTGANNGCACNACGGTTAGGAGTCATGCCTNCCCTTNGAACNTTTNACGCCTNANCCANTNTGACCTTNGTNGTNNTCANTNTCGTANAAAAGNCTTGAACACGAGGACANCATGACCACGNGCTACNGNNGANCTCGNACANGGACTAACTTGCTNACTAACTTGCGTGCTTTCTGTTNTACACNGAGAAATNAATCTGNCCTGNTCATNGTTCTNNGGGAGNAANACTAANGNATGATAGNTGTGTTACCATGGGTCNNAANCTTNCNTCTNTAACAAGACGTCCAAGTTTAGTCACTGGAATCCATTCTTTACTGTCTTCTTTACCACGTNCACNACCACGACCTCGTGCTCTACCTCCACGACCTCTACCTNTTGGACCTCCACGATCACCTCCTNCACGAGAACCAAATCCTCCACGAAAACCTCCNCGCGCGGCTGGAGCAGNGTCCGCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_251#0 GCATGGAGGTTTATTGCTTAAACAACCTCAGCAGGTCTCTGTCCACCCACAACTCTGTGA 60 consensus_251#1 ------------------------------------------------------------ consensus_251#0 TTCTTAGATAAGTAATCTGCGAATTCTTGATATGGTGCTTTTCTTAATGCTTGATCATGC 120 consensus_251#1 ------------------------------------------------------------ consensus_251#0 CAGAGATCTGGTGTTAAATATGCATAAGTTTTGGCAATAGCAGCATAAGTAGCCTTAGCA 180 consensus_251#1 ------------------------------------------------------------ consensus_251#0 AAATTGCCAAGAGTACATGTGGATCCTCTAGCCGAAGTATAGCAATCCTCAATACCAGCC 240 consensus_251#1 ------------------------------------------------------------ consensus_251#0 ATTTGTAATAGTTTTTTAGGCACAGGAGCTGAAACAATACCTGTACCTCTTGGTGCTGGA 300 consensus_251#1 ------------------------------------------------------------ consensus_251#0 ATTAGACGCACCTGAACAGATCCACACTTGCCAGTAACTTTACAGGGCACTGTATGAGGA 360 consensus_251#1 ------------------------------------------------------------ consensus_251#0 TCACCAATTTTATTTCCCCAATAACCACGGCGTACTGGCACAACTGAAAGTTTAGCCAAA 420 consensus_251#1 ---------------------------------------------------TCTGCCACT 9 * **** consensus_251#0 ATGATAGCACCACGGATAGCAGTAGCTACTTCC-TTAGAACATTTTACGCCTAAACCAAT 479 consensus_251#1 -TGANNGCACNACGGTTAGGAGTCATGCCTNCCCTTNGAACNTTTNACGCCTNANCCANT 68 *** **** **** *** *** ** ** ** **** *** ****** * *** * consensus_251#0 ATGACCTTTGTAGTCACCAATAGC-TACAAAAGCCTTGAA-ACGAGTACGT--TGACCA- 534 consensus_251#1 NTGACCTTNGTNGTNNTCANTNTCGTANAAAAGNCTTGAACACGAGGACANCATGACCAC 128 ******* ** ** ** * * ** ***** ****** ***** ** ****** consensus_251#0 GCTCTAGT-CTGTTTTTGTACAGGCA-TAATTT--TTAATACTTCAT---CTTTCAATTC 587 consensus_251#1 GNGCTACNGNNGANCTCGNACANGGACTAACTTGCTNACTAACTTGCGTGCTTTCTGTTN 188 * *** * * * *** * * *** ** * * ** * ***** ** consensus_251#0 AACACCAAGAAATTTATCAATAAT-TTCATATTCTTTGATTGGTAAAG---AAAAAAGAT 643 consensus_251#1 TACACNGAGAAATNAATCTGNCCTGNTCATNGTTCTNNGGGAGNAANACTAANGNATGAT 248 **** ****** *** * **** * * * ** * * *** consensus_251#0 AAATATGTT-CCAAGGATTCAATTTTTCCATCTCTAACAAGACGTCCAAGTTTAGTCACT 702 consensus_251#1 AGNTGTGTTACCATGGGTCNNAANCTTNCNTCTNTAACAAGACGTCCAAGTTTAGTCACT 308 * * **** *** ** * * ** * *** ************************** consensus_251#0 GGAATCCATTCTTTACTGTCTTCTTTACCACGTCCACGACCACGACCTCGTCCTCTACCT 762 consensus_251#1 GGAATCCATTCTTTACTGTCTTCTTTACCACGTNCACNACCACGACCTCGTGCTCTACCT 368 ********************************* *** ************* ******** consensus_251#0 CCACGACCTCTACCTCTTGGACCTCCACGATCACCTCCTCCACGAGAACCAAATCCTCCA 822 consensus_251#1 CCACGACCTCTACCTNTTGGACCTCCACGATCACCTCCTNCACGAGAACCAAATCCTCCA 428 *************** *********************** ******************** consensus_251#0 CGAAAACCTCCACGCGCGGCTGGAGCAGTGTCCGCC- 858 consensus_251#1 CGAAAACCTCCNCGCGCGGCTGGAGCAGNGTCCGCCA 465 *********** **************** ******* |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |