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Apis mellifera
cluster # 251 cluster # 251       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_251#0 length = 858 sequences # 4  
consensus_251#1 length = 465 sequences # 1  

consensusID : consensus_251#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 858
fasta sequence
                              [GCATGGAGGTTTATTGCTTAAACAACCTCAGCAGGTCTCTGTCCACCCACAACTCTGTGATTCTTAGATAAGTAATCTGCGAATTCTTGATATGGTGCTTTTCTTAATGCTTGATCATGCCAGAGATCTGGTGTTAAATATGCATAAGTTTTGGCAATAGCAGCATAAGTAGCCTTAGCAAAATTGCCAAGAGTACATGTGGATCCTCTAGCCGAAGTATAGCAATCCTCAATACCAGCCATTTGTAATAGTTTTTTAGGCACAGGAGCTGAAACAATACCTGTACCTCTTGGTGCTGGAATTAGACGCACCTGAACAGATCCACACTTGCCAGTAACTTTACAGGGCACTGTATGAGGATCACCAATTTTATTTCCCCAATAACCACGGCGTACTGGCACAACTGAAAGTTTAGCCAAAATGATAGCACCACGGATAGCAGTAGCTACTTCCTTAGAACATTTTACGCCTAAACCAATATGACCTTTGTAGTCACCAATAGCTACAAAAGCCTTGAAACGAGTACGTTGACCAGCTCTAGTCTGTTTTTGTACAGGCATAATTTTTAATACTTCATCTTTCAATTCAACACCAAGAAATTTATCAATAATTTCATATTCTTTGATTGGTAAAGAAAAAAGATAAATATGTTCCAAGGATTCAATTTTTCCATCTCTAACAAGACGTCCAAGTTTAGTCACTGGAATCCATTCTTTACTGTCTTCTTTACCACGTCCACGACCACGACCTCGTCCTCTACCTCCACGACCTCTACCTCTTGGACCTCCACGATCACCTCCTCCACGAGAACCAAATCCTCCACGAAAACCTCCACGCGCGGCTGGAGCAGTGTCCGCC]

[+] EMBL BI507047             [GCATGGAGGTTTATTGCTTAAACAACCTCAGCAGGTCTCTGTCCACCCACAACTCTGTGATTCTTAGATAAGTAATCTGCGAATTCTTGATATGGTGCTTTTCTTAATGCTTGATCATGCCAGAGATCTGGTGTTAAATATGCATAAGTTTTGGCAATAGCAGCATAAGTAGCCTTAGCAAAATTGCCAAGAGTACATGTGGATCCTCTAGCCGAAGTATAGCAATCCTCAATACCAGCCATTTGTAATAGTTTTTTAGGCACAGGAGCTGAAACAATACCTGTACCTCTTGGTGCTGGAATTAGACGCACCTGAACAGATCCACACTTGCCAGTAACTTTACAGGGCACTGTATGAGGATCACCAATTTTATTTCCCCAATAACCACGGCGTACTGGCACAACTGAAAGTTTAGCCAAAATGATAGCACCACGGATAGCAGTAGCTACTTCCTTAGAACATTTTACGCCTAAACCAATATGACCTTTGTAGTCACCAATAGCTACAAAAGCCTTGAAACGAGTACGTTGACCAGCTCTAGTCTGTTTTTGTACAGGCATAATTTTTAATACTTCATCTTTCAATTCAACACCAAGAAATTTATCAATAATTTCATATTCTTTGATTGGTAAAAAAAAAA                                                                                                                                                                                                                          ]
[-] EMBL BI509351             [                                                                                                      CTTAATGCTTGATCATGCCAGAGATCTGGTGTTAAATATGCATAAGTTTTGGCAATAGCAGCATAAGTAGCCTTAGCAAAATTGCCAAGAGTACATGTGGATCCTCTAGCCGAAGTATAGCAATCCTCAATACCAGCCATTTGTAATAGTTTTTTAGGCACAGGAGCTGAAACAATACCTGTACCTCTTGGTGCTGGAATTAGACGCACCTGAACAGATCCACACTTGCCAGTAACTTTACAGGGCACTGTATGAGGATCACCAATTTTATTTCCCCAATAACCACGGCGTACTGGCACAACTGAAAGTTTAGCCAAAATGATAGCACCACGGATAGCAGTAGCTACTTCCTTAGAACATTTTACGCCTAAACCAATATGACCTTTGTAGTCACCAATAGCTACAAAAGCCTTGAAACGAGTACGTTGACCAGCTCTAGTCTGTTTTTGTACAGGCATAATTTTTAATACTTCATCTTTCAATTCAACACCAAGAAATTTATCAATA                                                                                                                                                                                                                                                         ]
[-] EMBL BI946502             [                                                                                                                                                                                                                                                                                                                                                                       ATCACCAATTTTATTTCCCCAATAACCACGGCGTACTGGCACAACTGAAAGTTTAGCCAAAATGATAGCACCACGGATAGCAGTAGCTACTTCCTTAGAACATTTTACGCCTAAACCAATATGACCTTTGTAGTCACCAATAGCTACAAAAGCCTTGAAACGAGTACGTTGACCAGCTCTAGTCTGTTTTTGTACAGGCATAATTTTTAATACTTCATCTTTCAATTCAACACCAAGAAATTTATCAATAATTTCATATTCTTTGATTGGTAAAGAAAAAAGATAAATATGTTCCAAGGATTCAATTTTTCCATCTCTAACAAGACGTCCAAGTTTAGTCACTGGAATCCATTCTTTACTGTCTTCTTTACCACGTCCACGACCACGACCTCGTCCTCTACCTCCACGACCTCTACCTCTTGGACCTCCACGATCACCTCCTCCACGAGAACCAAATCCTCCACGAAAACCTCCACGCGCGGCTGGAGCAGTGTCCGCC]
[-] EMBL BI512623             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCTTGAAACGAGTACGTTGACCAGCTCTAGTCTGTTTTTGTACAGGCATAATTTTTAATACTTCATCTTTCAATTCAACACCAAGAAATTTATCAATAATTTCATATTCTTTGATTGGTAAAGAAAAAAGATAAATATGTTCCAAGGATTCAATTTTTCCATCTCTAACAAGACGTCCAAGTTTAGTCACTGGAATCCATTCTTTACTGTCTTCTTT                                                                                                                                  ]


>consensus_251#0 GCATGGAGGTTTATTGCTTAAACAACCTCAGCAGGTCTCTGTCCACCCACAACTCTGTGA TTCTTAGATAAGTAATCTGCGAATTCTTGATATGGTGCTTTTCTTAATGCTTGATCATGC CAGAGATCTGGTGTTAAATATGCATAAGTTTTGGCAATAGCAGCATAAGTAGCCTTAGCA AAATTGCCAAGAGTACATGTGGATCCTCTAGCCGAAGTATAGCAATCCTCAATACCAGCC ATTTGTAATAGTTTTTTAGGCACAGGAGCTGAAACAATACCTGTACCTCTTGGTGCTGGA ATTAGACGCACCTGAACAGATCCACACTTGCCAGTAACTTTACAGGGCACTGTATGAGGA TCACCAATTTTATTTCCCCAATAACCACGGCGTACTGGCACAACTGAAAGTTTAGCCAAA ATGATAGCACCACGGATAGCAGTAGCTACTTCCTTAGAACATTTTACGCCTAAACCAATA TGACCTTTGTAGTCACCAATAGCTACAAAAGCCTTGAAACGAGTACGTTGACCAGCTCTA GTCTGTTTTTGTACAGGCATAATTTTTAATACTTCATCTTTCAATTCAACACCAAGAAAT TTATCAATAATTTCATATTCTTTGATTGGTAAAGAAAAAAGATAAATATGTTCCAAGGAT TCAATTTTTCCATCTCTAACAAGACGTCCAAGTTTAGTCACTGGAATCCATTCTTTACTG TCTTCTTTACCACGTCCACGACCACGACCTCGTCCTCTACCTCCACGACCTCTACCTCTT GGACCTCCACGATCACCTCCTCCACGAGAACCAAATCCTCCACGAAAACCTCCACGCGCG GCTGGAGCAGTGTCCGCC



consensusID : consensus_251#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence
                              [TCTGCCACTTGANNGCACNACGGTTAGGAGTCATGCCTNCCCTTNGAACNTTTNACGCCTNANCCANTNTGACCTTNGTNGTNNTCANTNTCGTANAAAAGNCTTGAACACGAGGACANCATGACCACGNGCTACNGNNGANCTCGNACANGGACTAACTTGCTNACTAACTTGCGTGCTTTCTGTTNTACACNGAGAAATNAATCTGNCCTGNTCATNGTTCTNNGGGAGNAANACTAANGNATGATAGNTGTGTTACCATGGGTCNNAANCTTNCNTCTNTAACAAGACGTCCAAGTTTAGTCACTGGAATCCATTCTTTACTGTCTTCTTTACCACGTNCACNACCACGACCTCGTGCTCTACCTCCACGACCTCTACCTNTTGGACCTCCACGATCACCTCCTNCACGAGAACCAAATCCTCCACGAAAACCTCCNCGCGCGGCTGGAGCAGNGTCCGCCA]

[+] EMBL BG101649             [TCTGCCACTTGANNGCACNACGGTTAGGAGTCATGCCTNCCCTTNGAACNTTTNACGCCTNANCCANTNTGACCTTNGTNGTNNTCANTNTCGTANAAAAGNCTTGAACACGAGGACANCATGACCACGNGCTACNGNNGANCTCGNACANGGACTAACTTGCTNACTAACTTGCGTGCTTTCTGTTNTACACNGAGAAATNAATCTGNCCTGNTCATNGTTCTNNGGGAGNAANACTAANGNATGATAGNTGTGTTACCATGGGTCNNAANCTTNCNTCTNTAACAAGACGTCCAAGTTTAGTCACTGGAATCCATTCTTTACTGTCTTCTTTACCACGTNCACNACCACGACCTCGTGCTCTACCTCCACGACCTCTACCTNTTGGACCTCCACGATCACCTCCTNCACGAGAACCAAATCCTCCACGAAAACCTCCNCGCGCGGCTGGAGCAGNGTCCGCCA]


>consensus_251#1 TCTGCCACTTGANNGCACNACGGTTAGGAGTCATGCCTNCCCTTNGAACNTTTNACGCCT NANCCANTNTGACCTTNGTNGTNNTCANTNTCGTANAAAAGNCTTGAACACGAGGACANC ATGACCACGNGCTACNGNNGANCTCGNACANGGACTAACTTGCTNACTAACTTGCGTGCT TTCTGTTNTACACNGAGAAATNAATCTGNCCTGNTCATNGTTCTNNGGGAGNAANACTAA NGNATGATAGNTGTGTTACCATGGGTCNNAANCTTNCNTCTNTAACAAGACGTCCAAGTT TAGTCACTGGAATCCATTCTTTACTGTCTTCTTTACCACGTNCACNACCACGACCTCGTG CTCTACCTCCACGACCTCTACCTNTTGGACCTCCACGATCACCTCCTNCACGAGAACCAA ATCCTCCACGAAAACCTCCNCGCGCGGCTGGAGCAGNGTCCGCCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_251#0      GCATGGAGGTTTATTGCTTAAACAACCTCAGCAGGTCTCTGTCCACCCACAACTCTGTGA 60
consensus_251#1      ------------------------------------------------------------
                                                                                 

consensus_251#0      TTCTTAGATAAGTAATCTGCGAATTCTTGATATGGTGCTTTTCTTAATGCTTGATCATGC 120
consensus_251#1      ------------------------------------------------------------
                                                                                 

consensus_251#0      CAGAGATCTGGTGTTAAATATGCATAAGTTTTGGCAATAGCAGCATAAGTAGCCTTAGCA 180
consensus_251#1      ------------------------------------------------------------
                                                                                 

consensus_251#0      AAATTGCCAAGAGTACATGTGGATCCTCTAGCCGAAGTATAGCAATCCTCAATACCAGCC 240
consensus_251#1      ------------------------------------------------------------
                                                                                 

consensus_251#0      ATTTGTAATAGTTTTTTAGGCACAGGAGCTGAAACAATACCTGTACCTCTTGGTGCTGGA 300
consensus_251#1      ------------------------------------------------------------
                                                                                 

consensus_251#0      ATTAGACGCACCTGAACAGATCCACACTTGCCAGTAACTTTACAGGGCACTGTATGAGGA 360
consensus_251#1      ------------------------------------------------------------
                                                                                 

consensus_251#0      TCACCAATTTTATTTCCCCAATAACCACGGCGTACTGGCACAACTGAAAGTTTAGCCAAA 420
consensus_251#1      ---------------------------------------------------TCTGCCACT 9
                                                                        *  ****  

consensus_251#0      ATGATAGCACCACGGATAGCAGTAGCTACTTCC-TTAGAACATTTTACGCCTAAACCAAT 479
consensus_251#1      -TGANNGCACNACGGTTAGGAGTCATGCCTNCCCTTNGAACNTTTNACGCCTNANCCANT 68
                      ***  **** **** *** ***     ** ** ** **** *** ****** * *** *

consensus_251#0      ATGACCTTTGTAGTCACCAATAGC-TACAAAAGCCTTGAA-ACGAGTACGT--TGACCA- 534
consensus_251#1      NTGACCTTNGTNGTNNTCANTNTCGTANAAAAGNCTTGAACACGAGGACANCATGACCAC 128
                      ******* ** **   ** *  * ** ***** ****** ***** **    ****** 

consensus_251#0      GCTCTAGT-CTGTTTTTGTACAGGCA-TAATTT--TTAATACTTCAT---CTTTCAATTC 587
consensus_251#1      GNGCTACNGNNGANCTCGNACANGGACTAACTTGCTNACTAACTTGCGTGCTTTCTGTTN 188
                     *  ***     *   * * *** * * *** **  * * **  *      *****  ** 

consensus_251#0      AACACCAAGAAATTTATCAATAAT-TTCATATTCTTTGATTGGTAAAG---AAAAAAGAT 643
consensus_251#1      TACACNGAGAAATNAATCTGNCCTGNTCATNGTTCTNNGGGAGNAANACTAANGNATGAT 248
                      ****  ******  ***     *  ****  *  *      * **     *   * ***

consensus_251#0      AAATATGTT-CCAAGGATTCAATTTTTCCATCTCTAACAAGACGTCCAAGTTTAGTCACT 702
consensus_251#1      AGNTGTGTTACCATGGGTCNNAANCTTNCNTCTNTAACAAGACGTCCAAGTTTAGTCACT 308
                     *  * **** *** ** *   *   ** * *** **************************

consensus_251#0      GGAATCCATTCTTTACTGTCTTCTTTACCACGTCCACGACCACGACCTCGTCCTCTACCT 762
consensus_251#1      GGAATCCATTCTTTACTGTCTTCTTTACCACGTNCACNACCACGACCTCGTGCTCTACCT 368
                     ********************************* *** ************* ********

consensus_251#0      CCACGACCTCTACCTCTTGGACCTCCACGATCACCTCCTCCACGAGAACCAAATCCTCCA 822
consensus_251#1      CCACGACCTCTACCTNTTGGACCTCCACGATCACCTCCTNCACGAGAACCAAATCCTCCA 428
                     *************** *********************** ********************

consensus_251#0      CGAAAACCTCCACGCGCGGCTGGAGCAGTGTCCGCC- 858
consensus_251#1      CGAAAACCTCCNCGCGCGGCTGGAGCAGNGTCCGCCA 465
                     *********** **************** ******* 




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)