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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_251#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 858 fasta sequence
[GCATGGAGGTTTATTGCTTAAACAACCTCAGCAGGTCTCTGTCCACCCACAACTCTGTGATTCTTAGATAAGTAATCTGCGAATTCTTGATATGGTGCTTTTCTTAATGCTTGATCATGCCAGAGATCTGGTGTTAAATATGCATAAGTTTTGGCAATAGCAGCATAAGTAGCCTTAGCAAAATTGCCAAGAGTACATGTGGATCCTCTAGCCGAAGTATAGCAATCCTCAATACCAGCCATTTGTAATAGTTTTTTAGGCACAGGAGCTGAAACAATACCTGTACCTCTTGGTGCTGGAATTAGACGCACCTGAACAGATCCACACTTGCCAGTAACTTTACAGGGCACTGTATGAGGATCACCAATTTTATTTCCCCAATAACCACGGCGTACTGGCACAACTGAAAGTTTAGCCAAAATGATAGCACCACGGATAGCAGTAGCTACTTCCTTAGAACATTTTACGCCTAAACCAATATGACCTTTGTAGTCACCAATAGCTACAAAAGCCTTGAAACGAGTACGTTGACCAGCTCTAGTCTGTTTTTGTACAGGCATAATTTTTAATACTTCATCTTTCAATTCAACACCAAGAAATTTATCAATAATTTCATATTCTTTGATTGGTAAAGAAAAAAGATAAATATGTTCCAAGGATTCAATTTTTCCATCTCTAACAAGACGTCCAAGTTTAGTCACTGGAATCCATTCTTTACTGTCTTCTTTACCACGTCCACGACCACGACCTCGTCCTCTACCTCCACGACCTCTACCTCTTGGACCTCCACGATCACCTCCTCCACGAGAACCAAATCCTCCACGAAAACCTCCACGCGCGGCTGGAGCAGTGTCCGCC]
[+] EMBL BI507047 [GCATGGAGGTTTATTGCTTAAACAACCTCAGCAGGTCTCTGTCCACCCACAACTCTGTGATTCTTAGATAAGTAATCTGCGAATTCTTGATATGGTGCTTTTCTTAATGCTTGATCATGCCAGAGATCTGGTGTTAAATATGCATAAGTTTTGGCAATAGCAGCATAAGTAGCCTTAGCAAAATTGCCAAGAGTACATGTGGATCCTCTAGCCGAAGTATAGCAATCCTCAATACCAGCCATTTGTAATAGTTTTTTAGGCACAGGAGCTGAAACAATACCTGTACCTCTTGGTGCTGGAATTAGACGCACCTGAACAGATCCACACTTGCCAGTAACTTTACAGGGCACTGTATGAGGATCACCAATTTTATTTCCCCAATAACCACGGCGTACTGGCACAACTGAAAGTTTAGCCAAAATGATAGCACCACGGATAGCAGTAGCTACTTCCTTAGAACATTTTACGCCTAAACCAATATGACCTTTGTAGTCACCAATAGCTACAAAAGCCTTGAAACGAGTACGTTGACCAGCTCTAGTCTGTTTTTGTACAGGCATAATTTTTAATACTTCATCTTTCAATTCAACACCAAGAAATTTATCAATAATTTCATATTCTTTGATTGGTAAAAAAAAAA ]
[-] EMBL BI509351 [ CTTAATGCTTGATCATGCCAGAGATCTGGTGTTAAATATGCATAAGTTTTGGCAATAGCAGCATAAGTAGCCTTAGCAAAATTGCCAAGAGTACATGTGGATCCTCTAGCCGAAGTATAGCAATCCTCAATACCAGCCATTTGTAATAGTTTTTTAGGCACAGGAGCTGAAACAATACCTGTACCTCTTGGTGCTGGAATTAGACGCACCTGAACAGATCCACACTTGCCAGTAACTTTACAGGGCACTGTATGAGGATCACCAATTTTATTTCCCCAATAACCACGGCGTACTGGCACAACTGAAAGTTTAGCCAAAATGATAGCACCACGGATAGCAGTAGCTACTTCCTTAGAACATTTTACGCCTAAACCAATATGACCTTTGTAGTCACCAATAGCTACAAAAGCCTTGAAACGAGTACGTTGACCAGCTCTAGTCTGTTTTTGTACAGGCATAATTTTTAATACTTCATCTTTCAATTCAACACCAAGAAATTTATCAATA ]
[-] EMBL BI946502 [ ATCACCAATTTTATTTCCCCAATAACCACGGCGTACTGGCACAACTGAAAGTTTAGCCAAAATGATAGCACCACGGATAGCAGTAGCTACTTCCTTAGAACATTTTACGCCTAAACCAATATGACCTTTGTAGTCACCAATAGCTACAAAAGCCTTGAAACGAGTACGTTGACCAGCTCTAGTCTGTTTTTGTACAGGCATAATTTTTAATACTTCATCTTTCAATTCAACACCAAGAAATTTATCAATAATTTCATATTCTTTGATTGGTAAAGAAAAAAGATAAATATGTTCCAAGGATTCAATTTTTCCATCTCTAACAAGACGTCCAAGTTTAGTCACTGGAATCCATTCTTTACTGTCTTCTTTACCACGTCCACGACCACGACCTCGTCCTCTACCTCCACGACCTCTACCTCTTGGACCTCCACGATCACCTCCTCCACGAGAACCAAATCCTCCACGAAAACCTCCACGCGCGGCTGGAGCAGTGTCCGCC]
[-] EMBL BI512623 [ CCTTGAAACGAGTACGTTGACCAGCTCTAGTCTGTTTTTGTACAGGCATAATTTTTAATACTTCATCTTTCAATTCAACACCAAGAAATTTATCAATAATTTCATATTCTTTGATTGGTAAAGAAAAAAGATAAATATGTTCCAAGGATTCAATTTTTCCATCTCTAACAAGACGTCCAAGTTTAGTCACTGGAATCCATTCTTTACTGTCTTCTTT ]
consensusID : consensus_251#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence
[TCTGCCACTTGANNGCACNACGGTTAGGAGTCATGCCTNCCCTTNGAACNTTTNACGCCTNANCCANTNTGACCTTNGTNGTNNTCANTNTCGTANAAAAGNCTTGAACACGAGGACANCATGACCACGNGCTACNGNNGANCTCGNACANGGACTAACTTGCTNACTAACTTGCGTGCTTTCTGTTNTACACNGAGAAATNAATCTGNCCTGNTCATNGTTCTNNGGGAGNAANACTAANGNATGATAGNTGTGTTACCATGGGTCNNAANCTTNCNTCTNTAACAAGACGTCCAAGTTTAGTCACTGGAATCCATTCTTTACTGTCTTCTTTACCACGTNCACNACCACGACCTCGTGCTCTACCTCCACGACCTCTACCTNTTGGACCTCCACGATCACCTCCTNCACGAGAACCAAATCCTCCACGAAAACCTCCNCGCGCGGCTGGAGCAGNGTCCGCCA]
[+] EMBL BG101649 [TCTGCCACTTGANNGCACNACGGTTAGGAGTCATGCCTNCCCTTNGAACNTTTNACGCCTNANCCANTNTGACCTTNGTNGTNNTCANTNTCGTANAAAAGNCTTGAACACGAGGACANCATGACCACGNGCTACNGNNGANCTCGNACANGGACTAACTTGCTNACTAACTTGCGTGCTTTCTGTTNTACACNGAGAAATNAATCTGNCCTGNTCATNGTTCTNNGGGAGNAANACTAANGNATGATAGNTGTGTTACCATGGGTCNNAANCTTNCNTCTNTAACAAGACGTCCAAGTTTAGTCACTGGAATCCATTCTTTACTGTCTTCTTTACCACGTNCACNACCACGACCTCGTGCTCTACCTCCACGACCTCTACCTNTTGGACCTCCACGATCACCTCCTNCACGAGAACCAAATCCTCCACGAAAACCTCCNCGCGCGGCTGGAGCAGNGTCCGCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_251#0 GCATGGAGGTTTATTGCTTAAACAACCTCAGCAGGTCTCTGTCCACCCACAACTCTGTGA 60
consensus_251#1 ------------------------------------------------------------
consensus_251#0 TTCTTAGATAAGTAATCTGCGAATTCTTGATATGGTGCTTTTCTTAATGCTTGATCATGC 120
consensus_251#1 ------------------------------------------------------------
consensus_251#0 CAGAGATCTGGTGTTAAATATGCATAAGTTTTGGCAATAGCAGCATAAGTAGCCTTAGCA 180
consensus_251#1 ------------------------------------------------------------
consensus_251#0 AAATTGCCAAGAGTACATGTGGATCCTCTAGCCGAAGTATAGCAATCCTCAATACCAGCC 240
consensus_251#1 ------------------------------------------------------------
consensus_251#0 ATTTGTAATAGTTTTTTAGGCACAGGAGCTGAAACAATACCTGTACCTCTTGGTGCTGGA 300
consensus_251#1 ------------------------------------------------------------
consensus_251#0 ATTAGACGCACCTGAACAGATCCACACTTGCCAGTAACTTTACAGGGCACTGTATGAGGA 360
consensus_251#1 ------------------------------------------------------------
consensus_251#0 TCACCAATTTTATTTCCCCAATAACCACGGCGTACTGGCACAACTGAAAGTTTAGCCAAA 420
consensus_251#1 ---------------------------------------------------TCTGCCACT 9
* ****
consensus_251#0 ATGATAGCACCACGGATAGCAGTAGCTACTTCC-TTAGAACATTTTACGCCTAAACCAAT 479
consensus_251#1 -TGANNGCACNACGGTTAGGAGTCATGCCTNCCCTTNGAACNTTTNACGCCTNANCCANT 68
*** **** **** *** *** ** ** ** **** *** ****** * *** *
consensus_251#0 ATGACCTTTGTAGTCACCAATAGC-TACAAAAGCCTTGAA-ACGAGTACGT--TGACCA- 534
consensus_251#1 NTGACCTTNGTNGTNNTCANTNTCGTANAAAAGNCTTGAACACGAGGACANCATGACCAC 128
******* ** ** ** * * ** ***** ****** ***** ** ******
consensus_251#0 GCTCTAGT-CTGTTTTTGTACAGGCA-TAATTT--TTAATACTTCAT---CTTTCAATTC 587
consensus_251#1 GNGCTACNGNNGANCTCGNACANGGACTAACTTGCTNACTAACTTGCGTGCTTTCTGTTN 188
* *** * * * *** * * *** ** * * ** * ***** **
consensus_251#0 AACACCAAGAAATTTATCAATAAT-TTCATATTCTTTGATTGGTAAAG---AAAAAAGAT 643
consensus_251#1 TACACNGAGAAATNAATCTGNCCTGNTCATNGTTCTNNGGGAGNAANACTAANGNATGAT 248
**** ****** *** * **** * * * ** * * ***
consensus_251#0 AAATATGTT-CCAAGGATTCAATTTTTCCATCTCTAACAAGACGTCCAAGTTTAGTCACT 702
consensus_251#1 AGNTGTGTTACCATGGGTCNNAANCTTNCNTCTNTAACAAGACGTCCAAGTTTAGTCACT 308
* * **** *** ** * * ** * *** **************************
consensus_251#0 GGAATCCATTCTTTACTGTCTTCTTTACCACGTCCACGACCACGACCTCGTCCTCTACCT 762
consensus_251#1 GGAATCCATTCTTTACTGTCTTCTTTACCACGTNCACNACCACGACCTCGTGCTCTACCT 368
********************************* *** ************* ********
consensus_251#0 CCACGACCTCTACCTCTTGGACCTCCACGATCACCTCCTCCACGAGAACCAAATCCTCCA 822
consensus_251#1 CCACGACCTCTACCTNTTGGACCTCCACGATCACCTCCTNCACGAGAACCAAATCCTCCA 428
*************** *********************** ********************
consensus_251#0 CGAAAACCTCCACGCGCGGCTGGAGCAGTGTCCGCC- 858
consensus_251#1 CGAAAACCTCCNCGCGCGGCTGGAGCAGNGTCCGCCA 465
*********** **************** *******
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |