These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2511#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence [AATCTGTTGGACACACTAAAGGAAAACCGAATCAGTTGTACTTAAGTATCGACGAAATTTTCACCAGTGACACACTATGTAACCAGCGGAAAAAACGGACGTGTTGATGATACGTTTCTATGGACGGGGTTTGCGATAATTATTCGTTGAGGGCATCGTACCATAATGCCAGCCAACCTAGATTAGGGACGACGGGCGGCATGATGGCTTCCTTTGCGTGATTAGATATAGGAATAAGGTCCGTCGGTGAGGGCGCTACACAGCAACAGTCAGNAGGCGTCATCCTTTCCCCGAGCTCCTCTGCTCGGCTTATATTCCAGACCTGGGTCAAATTGCATCAGCACGAAAACCTGATCTGTAGGCAATAACGTGAAATCATCTGGAGGATTTGTAATGACGTATCGTTTAGAAGAAGCATCGCACGATGAGCTTGTATCTCGAAACCTGTACAGACCAATGCACAGCATTCCATATGACTTTAATGCTGCGACAAAG] [+] EMBL BI509396 [AATCTGTTGGACACACTAAAGGAAAACCGAATCAGTTGTACTTAAGTATCGACGAAATTTTCACCAGTGACACACTATGTAACCAGCGGAAAAAACGGACGTGTTGATGATACGTTTCTATGGACGGGGTTTGCGATAATTATTCGTTGAGGGCATCGTACCATAATGCCAGCCAACCTAGATTAGGGACGACGGGCGGCATGATGGCTTCCTTTGCGTGATTAGATATAGGAATAAGGTCCGTCGGTGAGGGCGCTACACAGCAACAGTCAGNAGGCGTCATCCTTTCCCCGAGCTCCTCTGCTCGGCTTATATTCCAGACCTGGGTCAAATTGCATCAGCACGAAAACCTGATCTGTAGGCAATAACGTGAAATCATCTGGAGGATTTGTAATGACGTATCGTTTAGAAGAAGCATCGCACGATGAGCTTGTATCTCGAAACCTGTACAGACCAATGCACAGCATTCCATATGACTTTAATGCTGCGACAAAG] consensusID : consensus_2511#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [TACATAGTGTGTCACTGGTGAAAATTTCGTCGATACTTAAGTACAACTGATTCGGTTTTCCTTTAGTGTGTCCAACAGATTTCTCTGTTCTTTGCTATTTATCGCTGCGTGATTTATTTTCACATCGTGTTCGAACATTTTTTACGTTGAGGCTTGTTTGTGATAACGAGTAGAAGAAGAAGGTAAAAAAAAATATTGTAGAGAAAGAAAAAAGAAGCATCGTGACAAATGTGAAGAGAGAAAGGAGGAAGAAGAAGGAGGACGAAAGAGGAATAATCTGCAAGAGGAAGAAAGAAATATAGAAACGGCAAAAGGGATACCGGGATGTGGTATGATGAAAAACGGTCCGAGGGTAGCTACACGTTAAGGTTTCTAAATCTTCGTAAGACGAAGAAATAATAACGTCTTCGATGGAAGGCTGAATAAGGACTGAACGGGCTTATCT] [+] EMBL BI508753 [TACATAGTGTGTCACTGGTGAAAATTTCGTCGATACTTAAGTACAACTGATTCGGTTTTCCTTTAGTGTGTCCAACAGATTTCTCTGTTCTTTGCTATTTATCGCTGCGTGATTTATTTTCACATCGTGTTCGAACATTTTTTACGTTGAGGCTTGTTTGTGATAACGAGTAGAAGAAGAAGGTAAAAAAAAATATTGTAGAGAAAGAAAAAAGAAGCATCGTGACAAATGTGAAGAGAGAAAGGAGGAAGAAGAAGGAGGACGAAAGAGGAATAATCTGCAAGAGGAAGAAAGAAATATAGAAACGGCAAAAGGGATACCGGGATGTGGTATGATGAAAAACGGTCCGAGGGTAGCTACACGTTAAGGTTTCTAAATCTTCGTAAGACGAAGAAATAATAACGTCTTCGATGGAAGGCTGAATAAGGACTGAACGGGCTTATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2511#0 --------------------AATCTGTTGGACACACTAAAGGAAAACCGAATCAGTTGTA 40 consensus_2511#1 TACATAGTGTGTCACTGGTGAAAATTTCGTCGATACTTAAGTACAACTGATTCGGTTTTC 60 ** * * * * *** *** * *** ** ** *** * consensus_2511#0 CTTAAGTATCGACGAAATTTTCACCAGTGACACACTATGTAAC-CAGCGGAAAAAACGGA 99 consensus_2511#1 CTTTAGTGTGTCCAACAGATTTCTCTGTTCTTTGCTATTTATCGCTGCGTGATTTATTTT 120 *** *** * * * * ** * ** **** ** * * *** * * consensus_2511#0 CGTGT--TGATGATACGTTTCTATGGACGGGGTTTGCG-ATAATTATTCGTTGAGGGCAT 156 consensus_2511#1 CACATCGTGTTCGAACATTTTTTACGTTGAGGCTTGTTTGTGATAACGAGTAGAAGAAG- 179 * * ** * ** *** * * * ** *** * ** * ** ** * consensus_2511#0 CGTACCATAATGCCAGCCAACCTAGATTAGGGACGACGGGCGGCATGATGGCTTCCTTTG 216 consensus_2511#1 ---AAGGTAAAAAAAAATATTGTAGAGAAAGAAAAAAGAA--GCATCGTGACAAATGTGA 234 * *** * * **** * * * * * **** ** * * consensus_2511#0 CGTGATTAGATATAGGAATAAGGTCCGTCGGTGAGGGCGCTACACAGCAACAGTCAGNAG 276 consensus_2511#1 AGAGAGAAAGGAGGAAGAAGAAGGAGGACGA-AAGAGGAATAATCTGCAAGAGGAAGAAA 293 * ** * * * * * * ** ** * ** * **** ** ** * consensus_2511#0 GCGTCATCCTTTCCCCGAGCTCCTCTGCTCGGCTTA-TATTCCAGACCTGGGTCAAATTG 335 consensus_2511#1 GAAATATAGAAACGGCAAAAGGGATACCGGGATGTGGTATGATGAAAAACGGTCCGAGGG 353 * ** * * * * * * *** * **** * * consensus_2511#0 CATCAGCACGAAAACCTGATCTGTAGGCAATAACGTGAAATCATCTGGAGGATTTGTAAT 395 consensus_2511#1 TAGCTACACGTTAA---GGTTTCTAAATCTT--CGTAAGAC-----GAAGAA---ATAAT 400 * * **** ** * * * ** * *** * * * ** * **** consensus_2511#0 GACGTATCGTTTAGAAGAAGCATCGCACGATGAGCTTGTATCTCGAAACCTGTACAGACC 455 consensus_2511#1 AACGTCTTCGATGGAAGGCTGAATAAGGACTGAACGGGCTTATCT--------------- 445 **** * * **** * *** * * * ** consensus_2511#0 AATGCACAGCATTCCATATGACTTTAATGCTGCGACAAAG 495 consensus_2511#1 ---------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |