These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2520#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [GAAAGTACGTGAACCTTGCGAAATTTTCGTTTACACAGCCGCCCGTATATCAAAAGTTTAATTGAATTTTCGGCCGAGGCCTTGGCCCGGGGAGATTAGGATCGTGGCCGGCCTCTTCTCCCCCCCCTGCCTCGTGTCTCTTTCCACCTACGACGACCCTGGCCGTCTTCCTGATACCTCACGTCCTCTTTATCTGTGTACTACAACCGTCCTTACGCGATTATTATTCTAGCTGCCCCTTCCACCTTTGATTATCATCCGATTGTGAGATAGAGAAGGAAGCGTCTTCAATTTGATTCCACGAGAGATTATTTTCTTTTTTTTAGGTATGTTGAGATTTGGTAATTAATAAGTTTTAAGTAGTTTTAGTTAATTCTGTATTTTTGTATTTTTAAGAAAGGGGCGACGAAGATACGAAGAATCGGTGTTTCTTTTTATTCTGAAATTTTTCTGTTAAACATCCTGTTATCTGTTAGAAAGGAAGGGAAGAGGGTATATTTTTTAAACGAGAAATAA] [+] EMBL BI503147 [GAAAGTACGTGAACCTTGCGAAATTTTCGTTTACACAGCCGCCCGTATATCAAAAGTTTAATTGAATTTTCGGCCGAGGCCTTGGCCCGGGGAGATTAGGATCGTGGCCGGCCTCTTCTCCCCCCCCTGCCTCGTGTCTCTTTCCACCTACGACGACCCTGGCCGTCTTCCTGATACCTCACGTCCTCTTTATCTGTGTACTACAACCGTCCTTACGCGATTATTATTCTAGCTGCCCCTTCCACCTTTGATTATCATCCGATTGTGAGATAGAGAAGGAAGCGTCTTCAATTTGATTCCACGAGAGATTATTTTCTTTTTTTTAGGTATGTTGAGATTTGGTAATTAATAAGTTTTAAGTAGTTTTAGTTAATTCTGTATTTTTGTATTTTTAAGAAAGGGGCGACGAAGATACGAAGAATCGGTGTTTCTTTTTATTCTGAAATTTTTCTGTTAAACATCCTGTTATCTGTTAGAAAGGAAGGGAAGAGGGTATATTTTTTAAACGAGAAATAA] consensusID : consensus_2520#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence [TGGGACTGTACAGGTGGTCAGTTGTCCCGGCCCGCATCGTGCAGGACAGGTGAGGGCCAATGAGATAAATTCGATCTTACCCTCATGACCAAAAGGGTACAATAAAACGTGTAATTATGCAAATATCTATTCGTATTCTGAGTATTCATTTTCTTTGAAACTCTCCCAAGAACTTACGGAAGAAAATACGCCTGACCACTAATAACAAGACGAGTATCCCCCATAAATCAAACATATCACGTCCATATTTTCCTTTCAAAAATGAAACAATTCAACGTATCTCGACCAAAAAGTAATTTATATACACCTATATCGTTCCACCTGGAATTTCCTTCCTCAAAGAAATCCGAATCTTCAAATTTTTATTTCTCGTTTAAAAAATATACCCTCTTCCCTTCCTTTCTAACAGATAACAGGATGTTT] [+] EMBL BI503728 [TGGGACTGTACAGGTGGTCAGTTGTCCCGGCCCGCATCGTGCAGGACAGGTGAGGGCCAATGAGATAAATTCGATCTTACCCTCATGACCAAAAGGGTACAATAAAACGTGTAATTATGCAAATATCTATTCGTATTCTGAGTATTCATTTTCTTTGAAACTCTCCCAAGAACTTACGGAAGAAAATACGCCTGACCACTAATAACAAGACGAGTATCCCCCATAAATCAAACATATCACGTCCATATTTTCCTTTCAAAAATGAAACAATTCAACGTATCTCGACCAAAAAGTAATTTATATACACCTATATCGTTCCACCTGGAATTTCCTTCCTCAAAGAAATCCGAATCTTCAAATTTTTATTTCTCGTTTAAAAAATATACCCTCTTCCCTTCCTTTCTAACAGATAACAGGATGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2520#0 GAAAGTACGTGAACCTTGCGAAATTTTCGTTTACACAGCCGCCCGTATATCAAAAGTTTA 60 consensus_2520#1 ---------------------------------------TGGGACTGTA-CAGGTGGTCA 20 * * ** ** * * * consensus_2520#0 ATTGAATTTTCGGCCGAGGCCTTGGCCCGGGGAGATTAGGATCGTGGCCGGCCTCTTCTC 120 consensus_2520#1 GTTG---TCCCGGCCC--GCATCGTGCAGGACAGGTGAGGGCCAATGA-GATAAATTCGA 74 *** * ***** ** * * * ** ** * *** * * * *** consensus_2520#0 CCCCCCCTGCCTCGTGTCTCTTTCCACCTACGACGACCCTGGCCGTCTTCCTGATACCTC 180 consensus_2520#1 TCTTAC---CCTCATGACCAAAA--GGGTACAATAAAACGTGTAATTATGCAAATATCTA 129 * * **** ** * *** * * * * * * * *** ** consensus_2520#0 ACGTCCTCTTTATCTGTGTACTACAACCGTCCTTACGCGATTATTATTCTAGCTGCCCCT 240 consensus_2520#1 -----TTCGTATTCTGAGTATT-----CATTTTCT-----TTGAAACTCTCCCAAGAACT 174 ** * **** *** * * * * ** * *** * ** consensus_2520#0 TCCACCTTTGATTATCATCCGATTGTGAGATAGAGAAGGAAGCGTCTTCAATTTGATTCC 300 consensus_2520#1 TACGGAAGAAAATA-CGCCTGACCACTA-ATAACAAGACGAGTATCCCCCAT--AAATCA 230 * * * ** * * ** * *** * ** ** * ** * ** consensus_2520#0 ACGAGAGATTATTTTCTTTTTTTTAGGTATGTTGAGATTTGGTAATT-AATAAGTTTTAA 359 consensus_2520#1 A--ACATATCACGTCCATATTTTC---CTTTCAAAAATGAAACAATTCAACGTATCTCGA 285 * * * ** * * * * **** * * ** **** ** * * * consensus_2520#0 GTAGTTTTAGTTAATTCTGTATTTTTGTATTTTTAAGAAAGGGGCGACGAAGATACGAAG 419 consensus_2520#1 CCAAA--AAGTAATTTATATACACCTATATCGTTCCACCTGGAATTTCCTTCCTCAAAGA 343 * *** * ** * ** * *** ** ** * * * consensus_2520#0 AATCGGTGTTTCTTTTTATTCTGAAATTTT-TCTGTTAAACATCCTGTTATCTGTTAGAA 478 consensus_2520#1 AATCCGAA--TCTTCAAATTTTTATTTCTCGTTTAAAAAATATACCCTCTTCCCTTCCTT 401 **** * **** *** * * * * * * *** ** * * ** ** consensus_2520#0 AGGAAGGGAAGAGGGTATATTTTTTAAACGAGAAATAA 516 consensus_2520#1 TCTAACAGATAACAGGATGTTT---------------- 423 ** ** * * ** *** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |