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Apis mellifera
cluster # 2546 cluster # 2546       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2546#0 length = 491 sequences # 1  
 consensus_2546#1 length = 352 sequences # 1  
consensusID : consensus_2546#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence 
                              [TTCTGTTGCATTACGATATGTTGAAAACAAATTTAACGATAGACATATCAGCACATTGCAGGCTTCCTTTTTAAATAAAAAATTGACTATACATGAAAAGAAAGTAAACTTGGCAATATGGGATACTGCTGGTCAAGAAAAATTTCATGCATTGGGACCAATTTATTATAGAATGTCAAATGGTGCCATTATAGTTTATGATGTTACTGATTACGATACATTCTTAAGGGTTATAAATTGGGTTACAGAACTTAGGAAAATGTTAGGCAGTGGAATTTGTTTAGCAATAGCTGGAAATAAAATAGATCTTGAAAAGGATAGACGTGTTTATATCGAAGAAGCAGAAGAGTTTGCTAATAAAGCAGGAGCTATGCATTTTCATATTTCTGCCAAATTAAATGAAAATATTGAAGAAATGTTTTTTCAATTAACAGTACGAATGATAGAACATGCAGATCTAATGGAACAAAAATCTACATTATCAAGAACAA]

[+] EMBL BI513740             [TTCTGTTGCATTACGATATGTTGAAAACAAATTTAACGATAGACATATCAGCACATTGCAGGCTTCCTTTTTAAATAAAAAATTGACTATACATGAAAAGAAAGTAAACTTGGCAATATGGGATACTGCTGGTCAAGAAAAATTTCATGCATTGGGACCAATTTATTATAGAATGTCAAATGGTGCCATTATAGTTTATGATGTTACTGATTACGATACATTCTTAAGGGTTATAAATTGGGTTACAGAACTTAGGAAAATGTTAGGCAGTGGAATTTGTTTAGCAATAGCTGGAAATAAAATAGATCTTGAAAAGGATAGACGTGTTTATATCGAAGAAGCAGAAGAGTTTGCTAATAAAGCAGGAGCTATGCATTTTCATATTTCTGCCAAATTAAATGAAAATATTGAAGAAATGTTTTTTCAATTAACAGTACGAATGATAGAACATGCAGATCTAATGGAACAAAAATCTACATTATCAAGAACAA]




>consensus_2546#0
TTCTGTTGCATTACGATATGTTGAAAACAAATTTAACGATAGACATATCAGCACATTGCA
GGCTTCCTTTTTAAATAAAAAATTGACTATACATGAAAAGAAAGTAAACTTGGCAATATG
GGATACTGCTGGTCAAGAAAAATTTCATGCATTGGGACCAATTTATTATAGAATGTCAAA
TGGTGCCATTATAGTTTATGATGTTACTGATTACGATACATTCTTAAGGGTTATAAATTG
GGTTACAGAACTTAGGAAAATGTTAGGCAGTGGAATTTGTTTAGCAATAGCTGGAAATAA
AATAGATCTTGAAAAGGATAGACGTGTTTATATCGAAGAAGCAGAAGAGTTTGCTAATAA
AGCAGGAGCTATGCATTTTCATATTTCTGCCAAATTAAATGAAAATATTGAAGAAATGTT
TTTTCAATTAACAGTACGAATGATAGAACATGCAGATCTAATGGAACAAAAATCTACATT
ATCAAGAACAA

consensusID : consensus_2546#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence 
                              [CTATAATTTCAAAGTTGTGTTGCTTGGCGAAGGATGTGTTGGAAAAACTTCTGTTGCATTACGATATGTTGAAAACAAATTTAACGATAGACATATCAGCACATTGCAGGCTTCCTTTTTAAATAAAAAATTGACTATACATGAAAAGAAAGTAAACTTGGCAATATGGGATACTGCTGGTCAAGAAAAATTTCATGCATTGGGACCAATTTATTATAGAATGTCAAATGNNNCCATTATAGTTTATGATGTTACTGATTACGATACATTCTTAAGGAACTTAGGAAAATGTTAGGCAGTGGAATTTGTTTAGCAATAGCTGGAAATAAAATAGATCTTGAAAAGGATAGAC]

[+] EMBL BI516117             [CTATAATTTCAAAGTTGTGTTGCTTGGCGAAGGATGTGTTGGAAAAACTTCTGTTGCATTACGATATGTTGAAAACAAATTTAACGATAGACATATCAGCACATTGCAGGCTTCCTTTTTAAATAAAAAATTGACTATACATGAAAAGAAAGTAAACTTGGCAATATGGGATACTGCTGGTCAAGAAAAATTTCATGCATTGGGACCAATTTATTATAGAATGTCAAATGNNNCCATTATAGTTTATGATGTTACTGATTACGATACATTCTTAAGGAACTTAGGAAAATGTTAGGCAGTGGAATTTGTTTAGCAATAGCTGGAAATAAAATAGATCTTGAAAAGGATAGAC]




>consensus_2546#1
CTATAATTTCAAAGTTGTGTTGCTTGGCGAAGGATGTGTTGGAAAAACTTCTGTTGCATT
ACGATATGTTGAAAACAAATTTAACGATAGACATATCAGCACATTGCAGGCTTCCTTTTT
AAATAAAAAATTGACTATACATGAAAAGAAAGTAAACTTGGCAATATGGGATACTGCTGG
TCAAGAAAAATTTCATGCATTGGGACCAATTTATTATAGAATGTCAAATGNNNCCATTAT
AGTTTATGATGTTACTGATTACGATACATTCTTAAGGAACTTAGGAAAATGTTAGGCAGT
GGAATTTGTTTAGCAATAGCTGGAAATAAAATAGATCTTGAAAAGGATAGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2546#0      ------------------------------------------------TTCTGTTGCATT 12
consensus_2546#1      CTATAATTTCAAAGTTGTGTTGCTTGGCGAAGGATGTGTTGGAAAAACTTCTGTTGCATT 60
                                                                      ************

consensus_2546#0      ACGATATGTTGAAAACAAATTTAACGATAGACATATCAGCACATTGCAGGCTTCCTTTTT 72
consensus_2546#1      ACGATATGTTGAAAACAAATTTAACGATAGACATATCAGCACATTGCAGGCTTCCTTTTT 120
                      ************************************************************

consensus_2546#0      AAATAAAAAATTGACTATACATGAAAAGAAAGTAAACTTGGCAATATGGGATACTGCTGG 132
consensus_2546#1      AAATAAAAAATTGACTATACATGAAAAGAAAGTAAACTTGGCAATATGGGATACTGCTGG 180
                      ************************************************************

consensus_2546#0      TCAAGAAAAATTTCATGCATTGGGACCAATTTATTATAGAATGTCAAATGGTGCCATTAT 192
consensus_2546#1      TCAAGAAAAATTTCATGCATTGGGACCAATTTATTATAGAATGTCAAATGNNNCCATTAT 240
                      **************************************************   *******

consensus_2546#0      AGTTTATGATGTTACTGATTACGATACATTCTTAAGGGTTATAAATTGGGTTACAGAACT 252
consensus_2546#1      AGTTTATGATGTTACTGATTACGATACATTCTTAAGG-------------------AACT 281
                      *************************************                   ****

consensus_2546#0      TAGGAAAATGTTAGGCAGTGGAATTTGTTTAGCAATAGCTGGAAATAAAATAGATCTTGA 312
consensus_2546#1      TAGGAAAATGTTAGGCAGTGGAATTTGTTTAGCAATAGCTGGAAATAAAATAGATCTTGA 341
                      ************************************************************

consensus_2546#0      AAAGGATAGACGTGTTTATATCGAAGAAGCAGAAGAGTTTGCTAATAAAGCAGGAGCTAT 372
consensus_2546#1      AAAGGATAGAC------------------------------------------------- 352
                      ***********                                                 

consensus_2546#0      GCATTTTCATATTTCTGCCAAATTAAATGAAAATATTGAAGAAATGTTTTTTCAATTAAC 432
consensus_2546#1      ------------------------------------------------------------
                                                                                  

consensus_2546#0      AGTACGAATGATAGAACATGCAGATCTAATGGAACAAAAATCTACATTATCAAGAACAA 491
consensus_2546#1      -----------------------------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)