These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2547#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [AGAAGCACTTGAAACGTCTTAATGCGCCTAAAGCATGGATGTTAGACAAGCTTGGAGGTGTATATGCTCCACGTCCATCTACGGGACCTCATAAATTAAGGGAATCTCTTCCTCTTGTTATTTTTCTTCGTAATAGATTGAAATATGCATTAACTAATTCTGAAGTAACAAAAATTGTAATGCAACGTTTGATTAAAGTTGATGGTAAGGTTAGAACTGATGCGAACTATCCAGCAGGTTTTATGGATGTCATTACTATTAATAAGACTGGTGAATATTTTCGATTGATTTATGATGTTAAAGGCAGATTTACCACTCATAGAATTACTGCAGAAGAAGCAAAGTATAAATTGTGTAAAGTTAAACGCGTTCAAACTGGTCCAAAAGGAATTCCATTTTTGGTAACACATGATGGAAGAACTATTCGTTATCCAGATCCTGTAATTAAAGTTAATGATACTATCCATTTAGATATAGCAACAGGAAAAATTTTAGATTCTATTCGATTTGATTCAGGTATATTTTTTTGATTATTTTATTTTTATTTTTATTATTATTATTTAGCATTTTTTTAAAAATAATGCTAAATATAAATATAAAAAAAA] [+] EMBL BI508448 [AGAAGCACTTGAAACGTCTTAATGCGCCTAAAGCATGGATGTTAGACAAGCTTGGAGGTGTATATGCTCCACGTCCATCTACGGGACCTCATAAATTAAGGGAATCTCTTCCTCTTGTTATTTTTCTTCGTAATAGATTGAAATATGCATTAACTAATTCTGAAGTAACAAAAATTGTAATGCAACGTTTGATTAAAGTTGATGGTAAGGTTAGAACTGATGCGAACTATCCAGCAGGTTTTATGGATGTCATTACTATTAATAAGACTGGTGAATATTTTCGATTGATTTATGATGTTAAAGGCAGATTTACCACTCATAGAATTACTGCAGAAGAAGCAAAGTATAAATTGTGTAAAGTTAAACGCGTTCAAACTGGTCCAAAAGGAATTCCATTTTTGGTAACACATGATGGAAGAACTATTCGTTATCCAGATCCTGTAATTAAAGTTAATGATACTATCCATTTAGATATAGCAACAGGAAAAATTTTAGATTCTATTCGATTTGATTCAGGTATATTTTTTTGATTATTTTATTTTTATTTTTATTATTATTATTTAGCATTTTTTTAAAAATAATGCTAAATATAAATATAAAAAAAA] consensusID : consensus_2547#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [GCAACGTTTGATTAAAGTTGATGGTAAGGTTAGAACTGATGCGAACTATCCAGCAGGTTTTATGGATGTCATTACTATTAATAAGACTGGTGAATATTTTCGATTGATTTATGATGTTAAAGGCAGATTTACCACTCATAGAATTACTGCAGAAGAAGCAAAGTATAAATTGTGTAAAGTTAAACGCGTTCAAACTGGTCCAAAAGGAATTCCATTTTTGGTAACACATGATGGAAGAACTATTCGTTATCCAGATCCTGTAATTAAAGTTAATGATACTATCCATTTAGATATAGCAACAGGAAAAATTTTAGATTCTATTCGATTTGATTCAGGTAATCTCTGTATGATTACTGGTGGAAGAAATTTAGGACGTGTAGGTACAGTCGTTAGTCGCGAACGTCATCCAGGATCTTTCGATATTTGTCATATTAAAGATTCACAAGGGCATACTTTTGCTACAAGATTGAACAACGTATTTATCATTGGCAAAGGTACAAAGCCATACATTAGCTNACCAAGAGACAAAGGTGTTAA] [+] EMBL BI503109 [GCAACGTTTGATTAAAGTTGATGGTAAGGTTAGAACTGATGCGAACTATCCAGCAGGTTTTATGGATGTCATTACTATTAATAAGACTGGTGAATATTTTCGATTGATTTATGATGTTAAAGGCAGATTTACCACTCATAGAATTACTGCAGAAGAAGCAAAGTATAAATTGTGTAAAGTTAAACGCGTTCAAACTGGTCCAAAAGGAATTCCATTTTTGGTAACACATGATGGAAGAACTATTCGTTATCCAGATCCTGTAATTAAAGTTAATGATACTATCCATTTAGATATAGCAACAGGAAAAATTTTAGATTCTATTCGATTTGATTCAGGTAATCTCTGTATGATTACTGGTGGAAGAAATTTAGGACGTGTAGGTACAGTCGTTAGTCGCGAACGTCATCCAGGATCTTTCGATATTTGTCATATTAAAGATTCACAAGGGCATACTTTTGCTACAAGATTGAACAACGTATTTATCATTGGCAAAGGTACAAAGCCATACATTAGCTNACCAAGAGACAAAGGTGTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2547#0 AGAAGCACTTGAAACGTCTTAATGCGCCTAAAGCATGGATGTTAGACAAGCTTGGAGGTG 60 consensus_2547#1 ------------------------------------------------------------ consensus_2547#0 TATATGCTCCACGTCCATCTACGGGACCTCATAAATTAAGGGAATCTCTTCCTCTTGTTA 120 consensus_2547#1 ------------------------------------------------------------ consensus_2547#0 TTTTTCTTCGTAATAGATTGAAATATGCATTAACTAATTCTGAAGTAACAAAAATTGTAA 180 consensus_2547#1 ------------------------------------------------------------ consensus_2547#0 TGCAACGTTTGATTAAAGTTGATGGTAAGGTTAGAACTGATGCGAACTATCCAGCAGGTT 240 consensus_2547#1 -GCAACGTTTGATTAAAGTTGATGGTAAGGTTAGAACTGATGCGAACTATCCAGCAGGTT 59 *********************************************************** consensus_2547#0 TTATGGATGTCATTACTATTAATAAGACTGGTGAATATTTTCGATTGATTTATGATGTTA 300 consensus_2547#1 TTATGGATGTCATTACTATTAATAAGACTGGTGAATATTTTCGATTGATTTATGATGTTA 119 ************************************************************ consensus_2547#0 AAGGCAGATTTACCACTCATAGAATTACTGCAGAAGAAGCAAAGTATAAATTGTGTAAAG 360 consensus_2547#1 AAGGCAGATTTACCACTCATAGAATTACTGCAGAAGAAGCAAAGTATAAATTGTGTAAAG 179 ************************************************************ consensus_2547#0 TTAAACGCGTTCAAACTGGTCCAAAAGGAATTCCATTTTTGGTAACACATGATGGAAGAA 420 consensus_2547#1 TTAAACGCGTTCAAACTGGTCCAAAAGGAATTCCATTTTTGGTAACACATGATGGAAGAA 239 ************************************************************ consensus_2547#0 CTATTCGTTATCCAGATCCTGTAATTAAAGTTAATGATACTATCCATTTAGATATAGCAA 480 consensus_2547#1 CTATTCGTTATCCAGATCCTGTAATTAAAGTTAATGATACTATCCATTTAGATATAGCAA 299 ************************************************************ consensus_2547#0 CAGGAAAAATTTTAGATTCTATTCGATTTGATTCAGGTA-TATTTTTTTGATTA------ 533 consensus_2547#1 CAGGAAAAATTTTAGATTCTATTCGATTTGATTCAGGTAATCTCTGTATGATTACTGGTG 359 *************************************** * * * * ****** consensus_2547#0 -------TTTTATTTTTATTTTTATTATTATTATTTA-GCATTTTTTTAAAAATAATGCT 585 consensus_2547#1 GAAGAAATTTAGGACGTGTAGGTACAGTCGTTAGTCGCGAACGTCATCCAGGATCTTTCG 419 *** * * ** * *** * * * * * * ** * * consensus_2547#0 AAATATAA-ATATAAAAAAAA--------------------------------------- 605 consensus_2547#1 ATATTTGTCATATTAAAGATTCACAAGGGCATACTTTTGCTACAAGATTGAACAACGTAT 479 * ** * **** *** * consensus_2547#0 ---------------------------------------------------------- consensus_2547#1 TTATCATTGGCAAAGGTACAAAGCCATACATTAGCTNACCAAGAGACAAAGGTGTTAA 537 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |