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Apis mellifera
cluster # 257 cluster # 257       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_257#0 length = 616 sequences # 3  
consensus_257#1 length = 453 sequences # 2  

consensusID : consensus_257#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 616
fasta sequence
                              [AAACTAAAATTCCCATAAGTACTTTTAAGTGTGATTCGTATATTATAACGCATATATATATATGCATGCATACCGGTTATATTTAACTATTCGTTAAACGATATGTGTATTATTGCGTAAACTATAAGACGTTCGAAGACGTTCATCGTACGTATGTTATGTATATGCGTTTGGAACCGCTCGGATAAGTAATTGACACAGTCGATACAGCAGACAGAGTGGTGGTTTACGTGACAGCTTAGACCAGGTTAAGGTTATGTCGAAAATTCGATCGAGCGAACCAATGTGTGTGATACTCGAAATATATTCATATACGTGGTCGGGAAATGACGTGAAATTCCTACGGTCGAGACACCGTGCCGTTGATTCTTAATATTGGATTTATCTTCACGGTCCTCGTTTAAAATATCTTCCGATTTTAATACTCGCTTCAGAAAAATTGACATTTTTCCGTTTATAAGGTTAACCTGCTTAAGTGCACACGTATGGAAATTCAAGCGAAATTCTCGCCGATTCTTGTTGATATTTTAAATTGCGAAGCCAGGAAAGATCTGTTTCG--GCTTTCAATTCGAGTTCAATCCGGGGAAAAAGGAAATTATAGCGAATATATCGATAT]

[-] EMBL BE844530             [AAACTAAAATTCCCATAAGTACTTTTAAGTGTGATTCGTATATTATAACGCATATATATATATGCATGCATACCGGTTATATTTAACTATTCGTTAAACGATATGTGTATTATTGCGTAAACTATAAGACGTTCGAAGACGTTCATCGTACGTATGTTATGTATATGCGTTTGGAACCGCTCGGATAAGTAATTGACACAGTCGATACAGCAGACAGAGTGGTGGTTTACGTGACAGCTTAGACCAGGTTAAGGTTATGTCGAAAATTCGATCGAGCGAACCAATGTGTGTGATACTCGAAATATATTCATATACGTGGTCGGGAAATAATGTGAAATTCTTACGGTCGAAACATCGTGCCGTTGATTCTTAATATTGGATTTATCTTCACGGTCCTCGTTTAAAATATCTTCCGATTTTAATACTCGCTTCAGAAAAATTGACATTTTTCCGTTTATAAGGTTAACCTGCTTAAGTGCACACGTATGGAAATTCAAGCGAAATTCTCGCCGATTCTTGTTGATATTTTAAATTGCGAAGCCAGAAAAAATCTGTTTCGAATTTTTCAATTCGAATTCA                                       ]
[+] EMBL BI507481             [                                                                                               AAACGATATGTGTATTATTGCGTAAACTATAAGACGTTCGAAGACGTTCATCGTACGTATGTTATGTATATGCGTTTGGAACCGCTCGGATAAGTAATTGACACAGTCGATACAGCAGACAGAGTGGTGGTTTACGTGACAGCTTAGACCAGGTTAAGGTTATGTCGAAAATTCGATCGAGCGAACCAATGTGTGTGATACTCGAAATATATTCATATACGTGGTCGGGAAATGACGTGAAATTCCTACGGTCGAGACACCGTGCCGTTGATTCTTAATATTGGATTTATCTTCACGGTCCTCGTTTAAAATATCTTCCGATTTTAATACTCGCTTCAGAAAAATTGACATTTTTCCGTTTATAAGGTTAACCTGCTTAAGTGCACACGTATGGAAATTCAAGCGAAATTCTCGCCGATTCTTGTTGATATTTTAAATTGCGAAGCCAGGAAAGATCTGTTTCG  GCTTTCAATTCGAGTTCAATCCGGGGAAAAAGGAAATTATAGCGAATATATCGATAT]
[+] EMBL BI504145             [                                                                                                                                                                                                                                                                                   GCGAACCAATGTGTGTGATACTCGAAATATATTCATATACGTGGTCGGGAAATGACGTGAAATTCCTACGGTCGAGACACCGTGCCGTTGATTCTTAATATTGGATTTATCTTCACGGTCCTCGTTTAAAATATCTTCCGATTTTAATACTCGCTTCAGAAAAATTGACATTTTTCCGTTTATAAGGTTAACCTGCTTAAGTGCACACGTATGGAAATTCAAGCGAAATTCTCGCCGATTCTTGTTGATATTTTAAATTGCGAAGCCAGGAAAGATCTGTTTCG  GCTTTCA                                                  ]


>consensus_257#0 AAACTAAAATTCCCATAAGTACTTTTAAGTGTGATTCGTATATTATAACGCATATATATA TATGCATGCATACCGGTTATATTTAACTATTCGTTAAACGATATGTGTATTATTGCGTAA ACTATAAGACGTTCGAAGACGTTCATCGTACGTATGTTATGTATATGCGTTTGGAACCGC TCGGATAAGTAATTGACACAGTCGATACAGCAGACAGAGTGGTGGTTTACGTGACAGCTT AGACCAGGTTAAGGTTATGTCGAAAATTCGATCGAGCGAACCAATGTGTGTGATACTCGA AATATATTCATATACGTGGTCGGGAAATGACGTGAAATTCCTACGGTCGAGACACCGTGC CGTTGATTCTTAATATTGGATTTATCTTCACGGTCCTCGTTTAAAATATCTTCCGATTTT AATACTCGCTTCAGAAAAATTGACATTTTTCCGTTTATAAGGTTAACCTGCTTAAGTGCA CACGTATGGAAATTCAAGCGAAATTCTCGCCGATTCTTGTTGATATTTTAAATTGCGAAG CCAGGAAAGATCTGTTTCGGCTTTCAATTCGAGTTCAATCCGGGGAAAAAGGAAATTATA GCGAATATATCGATAT



consensusID : consensus_257#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 453
fasta sequence
                              [AATAGGTGTCGCGGAACGAGAAAATTTACAATGATTTTTGCGCTATGCTAAATTCGAGTCTTCGCAGTCTACGGTAAAATCTTAGTGATCGGATACAGGAAGAAATCCTGTAACCATAACATAAGCGTTTATGGTATTTTATATTCTTTGGAATGCTTATAGTAGCGTATTCCACGAGCATTCGTTCGTTATTTATTATCTTCTGCTTTTATTTCACTAGTATTATTTCTCGCAACTATTTCCTTCTTTTTCACTGTGGCAATATCATCTTTGGTTCAAACTCTTCTCTATACATAAAAAGTCGCAAAGATATGAAAGATAAGATGCAAGTGATGGGTATTCATATGTAGATACACGACTGCTACAGATATATCGATATATTTGCTATAATTTCCTTTTTCCCCGGATTGAATTCGAATTGAAAAATTCGAAACAGATTTTTTCTGGCTTCGC]

[+] EMBL BI514389             [AATAGGTGTCGCGGAACGAGAAAATTTACAATGATTTTTGCGCTATGCTAAATTCGAGTCTTCGCAGTCTACGGTAAAATCTTAGTGATCGGATACAGGAAGAAATCCTGTAACCATAACATAAGCGTTTATGGTATTTTATATTCTTTGGAATGCTTATAGTAGCGTATTCCACGAGCATTCGTTCGTTATTTATTATCTTCTGCTTTTATTTCACTAGTATTATTTCTCGCAACTATTTCCTTCTTTTTCACTGTGGCAATATCATCTTTGGTTCAAACTCTTCTCTATACATAAAAAGTCGCAAAGATATGAAAGATAAGATGCAAGTGATGGGTATTCATATGTAGATACACGACTGCTACAGATATATCGATATATTTGCTATAATTTCCTTTTTCCCCGGATTGAATTCGAATTGAAAAATTCGAAACAGATTTTTTCTGGCTTCGC]
[+] EMBL BI514376             [AATAGGTGTCGCGGAACGAGAAAATTTACAATGATTTTTGCGCTATGCTAAATTCGAGTCTTCGCAGTCTACGGTAAAATCTTAGTGATCGGATACAGGAAGAAATCCTGTAACCATAACATAAGCGTTTATGGTATTTTATATTCTTTGGAATGCTTATAGTAGCGTATTCCACGAGCATTCGTTCGTTATTTATTATCTTCTGCTTTTATTTCACTAGTATTATTTCTCGCAACTATTTCCTTCTTTTTCACTGTGGCAATATCATCTTTGGTTCAAACTCTTCTCTATACATAAAAAGTCGCAAAGATATGAAAGATAAGATGCAAGTGATGGGTATTCATATGTAGATACACGACTGCTACAGATATATCGATATATTTGCTATAATTTCCTTTTTCCCCGGATTGAATTCGAATTGAAAAATTCGAAACAGATTTTTTCTGGCTTC  ]


>consensus_257#1 AATAGGTGTCGCGGAACGAGAAAATTTACAATGATTTTTGCGCTATGCTAAATTCGAGTC TTCGCAGTCTACGGTAAAATCTTAGTGATCGGATACAGGAAGAAATCCTGTAACCATAAC ATAAGCGTTTATGGTATTTTATATTCTTTGGAATGCTTATAGTAGCGTATTCCACGAGCA TTCGTTCGTTATTTATTATCTTCTGCTTTTATTTCACTAGTATTATTTCTCGCAACTATT TCCTTCTTTTTCACTGTGGCAATATCATCTTTGGTTCAAACTCTTCTCTATACATAAAAA GTCGCAAAGATATGAAAGATAAGATGCAAGTGATGGGTATTCATATGTAGATACACGACT GCTACAGATATATCGATATATTTGCTATAATTTCCTTTTTCCCCGGATTGAATTCGAATT GAAAAATTCGAAACAGATTTTTTCTGGCTTCGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_257#0      AAACTAAAATTCCCATAAGTACTTTTAAGTGTGATTCGTATATTATAACGCATATATATA 60
consensus_257#1      ------------------------------------------------------------
                                                                                 

consensus_257#0      TATGCATGCATACCGGTTATATTTAACTATTCGTTAAACGATATGTGTATTATTGCGTAA 120
consensus_257#1      ---------------------------------------AATAGGTGT-----CGCG-GA 15
                                                             *** ****      ***  *

consensus_257#0      ACTATAAGACGTTCGAAGACGTTCATCGTACGTATGTTATGTATATGCGTTTGGAACCGC 180
consensus_257#1      ACGAGAAAATTTACAATGATTTTTG-CGC---TATGCTAAATTCGAGTCTTCGCAGT--C 69
                     ** * ** *  * * * **  **   **    **** **  *    *  ** * *    *

consensus_257#0      TCGGATAAGTAATTGACACAGTCGATACAGCAGACAGAGTGGTGGT--TTACGTGACAGC 238
consensus_257#1      TACGGTAAAATCTTAGTG-ATCGGATACAGGAAGAAATCCTGTAACCATAACATAAGCGT 128
                     *  * ***    **     *   ******* *   *     **     * ** * *  * 

consensus_257#0      TTAGACCAGGTTAAGGTTATGTCGAAAATTCGATCGAGCGAAC-CAATGTGTGTGATACT 297
consensus_257#1      TTATGGTATTTTATA-TTCTTTGGAATGCTTATAGTAGCGTATTCCACGAGCATT-CGTT 186
                     ***    *  ***   ** * * ***   *      **** *  * * * *  *     *

consensus_257#0      CGAAATATATTCATATACGTGGTCGGGAAATGACGTGAAATTCCTACGGTCGAGACACCG 357
consensus_257#1      CGTTATTTATTATCTTCTGCTTTTATTTCACTAGTATTATTTCTCGCAACTATTTCCTTC 246
                     **  ** ****    *  *   *      *  *     * ***   *        *    

consensus_257#0      TGCCGTTGATTCTTAATATTGGATTTATCTTCACGGTCCTCGTTTAAAATATCTTCCGAT 417
consensus_257#1      TTTTTCACTGTGGCAATATCATCTTTGG-TTCAAACTCTTCTCTATACATAAAAAGTCGC 305
                     *         *   *****    ***   ****   ** **  *  * ***         

consensus_257#0      TTTAATACTCGCTTCAGAAA--AATTGACATTTTTCCGTTTATAAGGTTAACCTGCTTAA 475
consensus_257#1      AAAGATATGAAAGATAAGATGCAAGTGATGGGTATTCATATGTA--GATACACGACT--G 361
                         ***        *  *   ** ***    * * * * * **  * **  *  **   

consensus_257#0      GTGCACACGTATGGAAATTCAAGCGAAATTCTCGCCGATTCTTGTTGATATTTTAAATTG 535
consensus_257#1      CTACAGATATATCGATATATTTGCTATAATTTCCTTTTTCCCCGGATTGAATTCGAATTG 421
                      * ** *  *** ** **    ** * * * **     * *  *     * **  *****

consensus_257#0      CGAAGCCAGGAA-AGATCTGTTTCGGCTTTCAATTCGAGTTCAATCCGGGGAAAAAGGAA 594
consensus_257#1      AAAAATTCGAAACAGATTTTTTCTGGCTTCGC---------------------------- 453
                       **    * ** **** * **  *****                               

consensus_257#0      ATTATAGCGAATATATCGATAT 616
consensus_257#1      ----------------------
                                           




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)