|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_258#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 772 fasta sequence
[GGGCTCCATCGCGGACGCCTTAGGTCGACGGAAAGTTCTTATCGCCATCTCCTTCATAAATGCCCTTTGCATTGTCGCCTCCAGCTTCAGCCAATCTTATGCACTTTTCATGGTTTTCCGTTTTCTCAACGGTGCTGCTCTTGGAGGTAGCGGACCTGTGATTTGGTCATACTTTGCCGAATTCCAACCAAAATCGAAGCGAGGATCGATGTTGTCCTTCATGGCTGCCTTTTGGACACTTGGAAACCTCTTTGTTGCTGGTTTGGCGTGGTTGATCATCCCTCATGATATCGGTATCACATATTCAGCGTTCACGTATAATTCTTGGCGAATCTTCCTGCTGATCTGCGCTGCTCCATCGTTTATCGTCGCGGGGCTGCTCCTGTTGCTCCCTGAATCTCCTAAATACCTCTTATCCTGCGGAAGATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGCCATTAATACTGGCAAATCGCGTGATAGTTATACGGTGAAAGAGCAAATTTTTATACATTAATGTGTCACGAAATAAATATTTATTACAAATAAAAGCATCGAAAAAAATTACAATTTTCAATGAATTTTATTTCAGGTGAAAGAATTAATTTTAAATGACATCCGAGAACCGGAACTGACGAATAGTAGTATCGAAAAGAACAAATGCAAAACAATGCTCGCCGATATCGTAAACAATAGCAAACAACTCTTCGTCTCGCCTATACTTCGTTTCACCATGATTTCAATTATTATTAATTTCACTTTT]
[+] EMBL BI512055 [GGGCTCCATCGCGGACGCCTTAGGTCGACGGAAAGTTCTTATCGCCATCTCCTTCATAAATGCCCTTTGCATTGTCGCCTCCAGCTTCAGCCAATCTTATGCACTTTTCATGGTTTTCCGTTTTCTCAACGGTGCTGCTCTTGGAGGTAGCGGACCTGTGATTTGGTCATACTTTGCCGAATTCCAACCAAAATCGAAGCGAGGATCGATGTTGTCCTTCATGGCTGCCTTTTGGACACTTGGAAACCTCTTTGTTGCTGGTTTGGCGTGGTTGATCATCCCTCATGATATCGGTATCACATATTCAGCGTTCACGTATAATTCTTGGCGAATCTTCCTGCTGATCTGCGCTGCTCCATCGTTTATCGTCGCGGGGCTGCTCCTGTTGCTCCCTGAATCTCCTAAATACCTCTTATCCTGCGGAAGATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGCCATTAATACTGGCAAATCGCGTGATAGTTATACGGTGAAAGAATTAA ]
[+] EMBL BI516531 [ AGCGTTCACGTATAATTCTTGGCGAATCTTCCTGCTGATCTGCGCTGCTCCATCGTTTATCGTCGCGGGGCTGCTCCTGTTGCTCCCTGAATCTCCTAAATACCTCTTATCCTGCGGAAGATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGCCATTAATACTGGCAAATCGCGTGATAGTTATACGGTAAATATGCATTTTTTTATACATTAATGTGTCACGAAATAAATATTTATTACAAATAAAAGCATCGAAAAAAATTACAATTTTCAATGAATTTTATTTCAGGTGAAAGAATTAATTTTAAATGACATCCGAGAACCGGAACTGACGAATAGTAGTATCGAAAAGAACAAATGCAAAACAATGCTCGCCGATATCGTAAACAATAGCAAACAACTCTTCGTCTCGCCTATACTTCGTTTCACCATGATTTCAATTATTATTAATTTCACTTTT]
consensusID : consensus_258#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence
[CTGCGCTGCTCCATCGTTTATCGTCGCGGGGCTGCTCCTGTTGCTCCCTGAATCTCCTAAATACCTCTTATCCTGCGGAAGATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGCCATTAATACTGGCAAATCGCGTGATAGTTATACGGTGAAAGAATTAATTTTAAATGACATCCGAGAACCGGAACTGACGAATAGTAGTATCGAAAAGAACAAATGCAAAACAATGCTCGCCGATATCGTAAACAATAGCAAACAACTCTTCGTCTCGCCTATACTTCGTTTCACCATGATTTCAATTATTATTAATTTCACTTTTCACATCGGTTATTACGGTCTAATGATGTGGTTTCCTGAATTATTCAATCGTTTCGACGAGTTTCATCGTGATCATCCAAATGAAATCGCTTCGATATGTCAAGTGACCGAATACGTGGTTCAAAGAGGTTCTCAAAATATCAAGACTGTTTGTTCCGATAAAATTGGCGCTTCCGTTTTTATGGAATCGTTAATTACCGTAGCATCCGCTATACCTGCAAATATTATTGCTGTTCTAGGAATGGATCGTCTTGGCCGTAAATTTTTCTTATTGTTTAGTACACTTTCATCANNACTTTGCGCGATCGGATTATATTTTGTATACAATAAGCATCATAATCTGA]
[+] EMBL BI510119 [CTGCGCTGCTCCATCGTTTATCGTCGCGGGGCTGCTCCTGTTGCTCCCTGAATCTCCTAAATACCTCTTATCCTGCGGAAGATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGCCATTAATACTGGCAAATCGCGTGATAGTTATACGGTGAAAGAATTAATTTTAAATGACATCCGAGAACCGGAACTGACGAATAGTAGTATCGAAAAGAACAAATGCAAAACAATGCTCGCCGATATCGTAAACAATAGCAAACAACTCTTCGTCTCGCCTATACTTCGTTTCACCATGATTTCAATTATTATTAATTTCACTTTTCACATCGGTTATTACGGTCTAATGATGTGGTTTCCTGAATTATTCAATCGTTTCGACGAGTTTCATCGTGATCATCCAAATGAAATCGCTTCGATATGTCAAGTGACCGAATACGTGGTTCAAAGAGGTTCTCAAAATATCAAGACTGTTTGTTCCGATAAAATTGGCGCTTCCGTTTTTATGGAATCGTTAATTACCGTAGCATCCGCTATACCTGCAAATATTATTGCTGTTCTAGGAATGGATCGTCTTGGCCGTAAATTTTTCTTATTGTTTAGTACACTTTCATCANNACTTTGCGCGATCGGATTATATTTTGTATACAATAAGCATCATAATCTGA]
consensusID : consensus_258#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 520 fasta sequence
[GTACACTTTCATCAGGACTTTGCGCGATCGGATTATATTTTGTATACAATAAGCATCATAATCTGATCGTTTCGGCTATCTTCAGCGGTGTGATAAGCTGTGGAAATGCAGCTCTAGACTGTTTAATAACCGAAGTTTTCCCGACACCTCTTCGCGCAACAGGAATTGCCATTTCTATGGTTGCAGCGCGCCTCGGTGGAATTATTGGTAACATCGTAATATCTCAACTCTTGGATATGTATTNNNCAGCACCAACTTTTATCGTTGCTGCACTTTTAATCGNNNGAGGATTATTATGTTTATTCTTACCAAATACAACACGGGAACCACTTTCTTGACATCGGTGAAAACTTGCATCAGATCGAATAAATTGATGTACAGTCATATACACATAAAATTGAAAAACTTATCACGTTTATAATAACAAATTGTGCGTTCATGTATTTGTTCATTTAATTCATAATAATCGAATCATTCTAGACAACATACATTGCGGCGATTGAGCATCACATTCCTGTTT]
[+] EMBL BI512726 [GTACACTTTCATCAGGACTTTGCGCGATCGGATTATATTTTGTATACAATAAGCATCATAATCTGATCGTTTCGGCTATCTTCAGCGGTGTGATAAGCTGTGGAAATGCAGCTCTAGACTGTTTAATAACCGAAGTTTTCCCGACACCTCTTCGCGCAACAGGAATTGCCATTTCTATGGTTGCAGCGCGCCTCGGTGGAATTATTGGTAACATCGTAATATCTCAACTCTTGGATATGTATTGTCCAGCACCAACTTTTATCGTTGCTGCACTTTTAATCGGTGGAGGATTATTATGTTTATTCTTACCAAATACAACACGGGAACCACTTTCTTGACATCGGTGAAAACTTGCATCAGATCGAATAAATTGATGTACAGTCATATACACATAAAATTGAAAAACTTATCACGTTTATAATAACAAATTGTGCGTTCATGTATTTGTTCATTTAATTCATAATAATCGAATCATTCTAGACAACATACATTGCGGCGATTGAGCATCACATTCCTGTTT]
[+] EMBL BI506649 [ ACTTTGCGCGATCGGATTATATTTTGTATACAATAAGCATCATAATCTGATCGTTTCGGCTATCTTCAGCGGTGTGATAAGCTGTGGAAATGCAGCTCTAGACTGTTTAATAACCGAAGTTTTCCCGACACCTCTTCGCGCAACAGGAATTGCCATTTCTATGGTTGCAGCGCGCCTCGGTGGAATTATTGGTAACATCGTAATATCTCAACTCTTGGATATGTATTNNNCAGCACCAACTTTTATCGTTGCTGCACTTTTAATCGNNNGAGGATTATTATGTTTATTCTTACCAAATACAACACGGGAACCACTTTCTTGACATCGGTGAAAACTTGCATCAGATCGAATAAATTGATGTACAGTCATATACACATAAAATTGAAAAACTTATCACGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_258#0 GGGCTCCATCGCGGACGCCTTAGGTCGACGGAAAGTTCTTATCGCCATCTCCTTCATAAA 60
consensus_258#1 ------------------------------------------------------------
consensus_258#2 ------------------------------------------------------------
consensus_258#0 TGCCCTTTGCATTGTCGCCTCCAGCTTCAGCCAATCTTATGCACT-TTTCATGGTTTTCC 119
consensus_258#1 --------------------------------------CTGCGCTGCTCCATCGTTTATC 22
consensus_258#2 ------------------------------------------------------------
consensus_258#0 GTTTTCTCAACGGTGCTGCTCTTGGAGGTAGCGGA--CCTGTGATTTGGTCATACTTTGC 177
consensus_258#1 GTC------GCGGGGCTGCTCCTGTTGCTCCCTGAATCTCCTAAATACCTCTTATCCTGC 76
consensus_258#2 ------------------------------------------------------------
consensus_258#0 CGAATTCCAACCAAAATCGAAGCGAGGATCGATGTTGTCCTTCATGGCTGCCTTTTGGAC 237
consensus_258#1 GGAA---------GATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGCCATTAAT 127
consensus_258#2 ------------------------------------------------------------
consensus_258#0 ACTTGGAAACCTCTTTGTTGCTGGTTTGGCGTGGTTGATCATCCCTCATGATATCGGTAT 297
consensus_258#1 ACTGGCAAATCGCGTGATAGTTA-TACGGTGAAAGAATTAATTTTAAATGACATCCG--- 183
consensus_258#2 ---GTACACTTTCATCAGGACTT-TGCGCGATCGGATTATATTTTGTATACAATAAGCAT 56
* * * * * * ** ** ** *
consensus_258#0 CACATATTCAGCGT-TCACGTATAAT--TCTTGGCGAATCTTCCTGCTGATCTGCGCTGC 354
consensus_258#1 ---AGAACCGGAAC-TGACGAATAGTAGTATCGAAAAGAACAAATGCAAAACAATGCTCG 239
consensus_258#2 C--ATAATCTGATCGTTTCGGCTATCTTCAGCGGTGTGATAAGCTGTGGAA--ATGCAGC 112
* * * * * ** ** * ** * **
consensus_258#0 TC--CATCGTTTATCGTCGCGGG--GCTGCTCCTGTTGCT----CCCTGAATCTCCTAAA 406
consensus_258#1 CCGATATCGTAAACAATAGCAAACAACTCTTCGTCTCGCCTATACTTCGTTTCACCATGA 299
consensus_258#2 TCTAGACTGTT--TAATAACCGA--AGTTTTCCCGACACCT---CTTCGCGCAACAGGAA 165
* * ** * * * ** * * * * *
consensus_258#0 TACCTCTTATCCTGCGGAAGATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGCC 466
consensus_258#1 TTTCAATTATTATTAATTTCACTTTTCACATCGGTTATTACGGTCTAATGATGTGGTTTC 359
consensus_258#2 TTGCCATTTCTATGGTTGCAGCGCGCCTCGGTGGA-ATTATTGG-TAACATCGTAATATC 223
* * ** * * ** * * *
consensus_258#0 ATTAATACTGGCAAATCGCGT-GAT-AGTTATACGGTGAAAGAGCAAATTTTTATACATT 524
consensus_258#1 CTGAAT--TATTCAATCGTTTCGACGAGTTTCATCGTGATCATCCAAATGAAATCGCTTC 417
consensus_258#2 TCAACTCTTGGATA--TGTATTNNNCAGCACCAACTT--TTATC--GTTGCTGCACTTTT 277
* * * * * * ** * * * *
consensus_258#0 AATGTGTCACGAAAT-AAATATTTATTACAAATAAAAGCATCGAAA----AAAATTACAA 579
consensus_258#1 GATATGTCAAGTGACCGAATACGTGGTTCAAA-GAGGTTCTCAAAATATCAAGACTGTTT 476
consensus_258#2 AATCGNNNGAGGATTATTATGTTTATTCTTACCAAATACAACACGGGAACCACTTTCTTG 337
** * ** * * * * * * *
consensus_258#0 TTTTCAATGAATTT--TATTTCAG-----GTGAAAGAATTAATTTTAAATGACATCCGAG 632
consensus_258#1 GTTCCGATAAAATTGGCGCTTCCGTTTTTATGGAATCGTTAATTACCG-TAGCATCCG-- 533
consensus_258#2 ACATCGGTGAAAACT-TGCATCAGAT----CGAATAAATTGATGTACAGTCATATACA-- 390
* * ** ** * * * ** ** * ** *
consensus_258#0 AACCGGAACTGACGAATAGTAGTATCGAAAAGAACAAATGCAAAACAATGCTCGCCGATA 692
consensus_258#1 ---CTATACCTGCAAATATTATTGCTGTTCTAGG--AATGGATCGTCTTGGCCGTAAATT 588
consensus_258#2 --CATAAAATTGAAAAACTTATCACGTTTATAAT--AACAAATTGTG-CGTTCATGTATT 445
* ** ** ** * * * **
consensus_258#0 TCGTAAACAATAGCAAACAACTCTTCGTCTCGCCTATACTTCGTTTCACCATGATTTCAA 752
consensus_258#1 TTTCT--TATTGTTTAGTACACTTTCATCANNACTTTGCGCGATCGGATTAT-ATTTTGT 645
consensus_258#2 TGTTC------ATTTAATTCATAATAATCGAATCATT-CTAGACAACAT----ACATTGC 494
* * * ** * * * * * *
consensus_258#0 TTATTATTAATTTCACTTTT------ 772
consensus_258#1 ATACAATAAGCATCATAATCTGA--- 668
consensus_258#2 GGCGATTGAGCATCACATTCCTGTTT 520
* * *** *
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |