These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_264#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 657 fasta sequence [CAGCTCACCAGTTTGATTCGGACCAAGCGTTTTTCCTGTTTCGATATCTATAATTTTTATTTGGCAATTTGGAATCACAATGCCACAAGAACCACTTGTAGCAATTGATGATTGTATGGTAATTATACCACCTAATTCTGTCATGCCATATGCCTGTATAATCATAGTATTTGATAAATATTTTTTTATTATATCTTGAGTTTCTCGATTCAATGCAGATCCACCAATAATGGCAAATTTTAAATTGGAAATATCATAATCGTGTAAATAATCATATCGTACAAATCGATTTGCCATGCTGGTACTTAACATTATCCAATCAACCTTATATTTTTCAATTATTTCGCAAGCAATCTTCTCATTGAATTCTGGTGCACTTATTTTCTTGATATGGAAATAAATACTTTTGAGATTAAGAAACGATCCACTAATCCAGTACAAAGGAGTAAACCACAATTGTGTTTGAATACCATAAGGAAAACCTTCTCTTAGTTCCATAATATTCAAAATTGACTTATGTGAAAGTTGTACGCCTTTAGGCATACCCGTTGTTCCAGATGAAAACATGATCAAACCAGTATGTGAGGGATCGTCAATATCAGTGCATTGAAAATTAGCTACAGTTGATTTATCATGATATTTTAATGTCTCCGAAAA] [+] EMBL BE844586 [CAGCTCACCAGTTTGATTCGGACCAAGCGTTTTTCCTGTTTCGATATCTATAATTTTTATTTGGCAATTTGGAATCACAATGCCACAAGAACCACTTGTAGCAATTGATGATTGTATGGTAATTATACCACCTAATTCTGTCATGCCATATGCCTGTATAATCATAGTATTTGATAAATATTTTTTTATTATATCTTGAGTTTCTCGATTCAATGCAGATCCACCAATAATGGCAAATTTTAAATTGGAAATATCATAATCGTGTAAATAATCATATCGTACAAATCGATTTGCCATGCTGGTACTTAACATTATCCAATCAACCTTATATTTTTCAATTATTTCGCAAGCAATCTTCTCATTGAATTCTGGTGCACTTATTTTCTTGATATGGAAATAAATACTTTTGAGATTAAGAAACGATCCACTAATCCAGTACAAAGGAGTAAACCACAATTGTGTTTGAATACCATAAGGAAAACCTTCTCTTAGTTCCATAATATTCAAAATTGACTTATGTGAAAGTTGTACGCCTTTAGGCATACCCGTTGTTCCAGATGAAAACATGATCAAACCAGTATGTGAGGGATCGTCAATATCAGTGCATTGAAAATTAGCTACAGTTGATTTATC ] [+] EMBL BE844665 [ ATTTTTATTTGGCAATTTGGAATCACAATGCCACAAGAACCACTTGTAGCAATTGATGATTGTATGGTAATTATACCACCTAATTCTGTCATGCCATATGCCTGTATAATCATAGTATTTGATAAATATTTTTTTATTATATCTTGAGTTTCTCGATTCAATGCAGATCCACCAATAATGGCAAATTTTAAATTGGAAATATCATAATCGTGTAAATAATCATATCGTACAAATCGATTTGCCATGCTGGTACTTAACATTATCCAATCAACCTTATATTTTTCAATTATTTCGCAAGCAATCTTCTCATTGAATTCTGGTGCACTTATTTTCTTGATATGGAAATAAATACTTTTGAGATTAAGAAACGATCCACTAATCCAGTACAAAGGAGTAAACCACAATTGTGTTTGAATACCATAAGGAAAACCTTCTCTTAGTTCCATAATATTCAAAATTGACTTATGTGAAAGTTGTACGCCTTTAGGCATACCCGTTGTTCCAGATGAAAACATGATCAAACCAGTATGTGAGGGATCGTCAATATCAGTGCATTGAAAATTAGCTACAGTTGATTTATCATGATATTTTAATGTCTCCGAAAA] consensusID : consensus_264#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 652 fasta sequence [GCTTTGATAAATTAAAATCAACTTATTCTGATTTTTTTAGTGTAACTTTTATAATAATCATCAATATGTGCATCGATGACAAGAAAGATGATAATACAGAATTAGACAGAATGTTTACAATCGAAAACAACGTGCTGAAAGGAAGAGTGATATCGAATGATAATGGATATACTAGCGTAGGGAAATTAATATTCGACACTTTTAGAAGCAAACCAAACTTTGTTTGGCAGGTTGATGCGATTTCAGGAATCGAAGATAATTTTTCCGATATATGCGATCGGACAATAAAATGTGCACTTTGGATGCAGAAACATGGAGTGAAAAAAGGCGACATTGTCGCAATCTGTTCACACAATCACCGTGATTGTATAATTCCTTTTCTTGCTACACTCTATCTAGGTGCCATTGTCAATCCATGGGATCATCTGATGAATATTGATATGGCACGACATTTTATAACATTATCTCAACCAAGGGTAATTTTCGTGAATGAAGGATCAGCAGAAATCGCATTAGAAGCGGCAAAAAATTGAACTTCATCATACAAAACTAGTATGTTTTGGCTATTATCCTGGCATAATACCATTTTCGGAGACATTAAAATATCATGATAAATCAACTGTAGCTAATTTTCAATGCACTGATATTGACG] [+] EMBL BE844471 [GCTTTGATAAATTAAAATCAACTTATTCTGATTTTTTTAGTGTAACTTTTATAATAATCATCAATATGTGCATCGATGACAAGAAAGATGATAATACAGAATTAGACAGAATGTTTACAATCGAAAACAACGTGCTGAAAGGAAGAGTGATATCGAATGATAATGGATATACTAGCGTAGGGAAATTAATATTCGACACTTTTAGAAGCAAACCAAACTTTGTTTGGCAGGTTGATGCGATTTCAGGAATCGAAGATAATTTTTCCGATATATGCGATCGGACAATAAAATGTGCACTTTGGATGCAGAAACATGGAGTGAAAAAAGGCGACATTGTCGCAATCTGTTCACACAATCACCGTGATTGTATAATTCCTTTTCTTGCTACACTCTATCTAGGTGCCATTGTCAATCCATGGGATCATCTGATGAATATTGATATGGCACGACATTTTATAACATTATCTCAACCAAAAGTAATTTTCGTGAATGAAGGATCAGCAGAAATCGCATTAGAAGCGGCAAAAAATTGAACTTCATCATACAAAACTAGTATGTTTTGGCTATTATCCTGG ] [+] EMBL BE844623 [GCTTTGATAAATTAAAATCAACTTATTCTGATTTTTTTAGTGTAACTTTTATAATAATCATCAATATGTGCATCGATGACAAGAAAGATGATAATACAGAATTAGACAGAATGTTTACAATCGAAAACAACGTGCTGAAAGGAAGAGTGATATCGAATGATAATGGATATACTAGCGTAGGGAAATTAATATTCGACACTTTTAGAAGCAAACCAAACTTTGTTTGGCAGGTTGATGCGATTTCAGGAATCGAAGATAATTTTTCCGATATATGCGATCGGACAATAAAATGTGCACTTTGGATGCAGAAACATGGAGTGAAAAAAGGCGACATTGTCGCAATCTGTTCACACAATCACCGTGATTGTATAATTCCTTTTCTTGCTACACTCTATCTAGGTGCCATTGTCAATCCATGGGATCATCTGATGAATATTGATATGGCACGACATTTTATAACATT ] [+] EMBL BE844584 [ TCTGATTTTTTTAGTGTAACTTTTATAATAATCATCAATATGTGCATCGATGACAAGAAAGATGATAATACAGAATTAGACAGAATGTTTACAATCGAAAACAACGTGCTGAAAGGAAGAGTGATATCGAATGATAATGGATATACTAGCGTAGGGAAATTAATATTCGACACTTTTAGAAGCAAACCAAACTTTGTTTGGCAGGTTGATGCGATTTCAGGAATCGAAGATAATTTTTCCGATATATGCGATCGGACAATAAAATGTGCACTTTGGATGCAGAAACATGGAGTGAAAAAAGGCGACATTGTCGCAATCTGTTCACACAATCACCGTGATTGTATAATTCCTTTTCTTGCTACACTCTATCTAGGTGCCATTGTCAATCCATGGGATCATCTGATGAATATTGATATGGCACGACATTTTATAACATTATCTCAACCAAGGGTAATTTTCGTGAATGAAGGATCAGCAGAAATCGCATTAGAAGCGGC AAAAATTGAACTTCATCATACAAAACTAGTATGTTTTGGCTATTATCCTGGCATAATACCATTTTCGGAGACATTAAAATATCATGATAAATCAACTGTAGCTAATTTTCAATGCACTGATATTGACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_264#0 CAGCTCACCAGTTTGATTCGGACCAAGC-GTTTTTCCTGTTTCGATATCTATAATTTTTA 59 consensus_264#1 GCTTTGATAAATTAAAATCAACTTATTCTGATTTTTTTAGTGTAACTTTTATAATAATCA 60 * * * ** * ** * * * **** * * * * ****** * * consensus_264#0 TTTGGCAATTTGGAATCACAATGCCACAAGAACCACTTGTAGCAATTGATGATTGTATGG 119 consensus_264#1 T----CAATATGTG-CATCGATGACAAGAAAGATGATAATACAGAATTA-GACAGAATGT 114 * **** ** * *** ** * * * ** * * * ** * *** consensus_264#0 TAATTATACCACCTAA--TTCTGTCATGCCATATGCCTGTATAATCATAGTATTTG-ATA 176 consensus_264#1 TTACAATCGAAAACAACGTGCTGAAAGGAAGAGTGA-TATCGAATGATAATGGATATACT 173 * * ** * ** * *** * * ** * * *** *** * * * consensus_264#0 AATATTTTTTTATTA-TATCTTGAGTTTCTCGATTCAATGCAGATCCACCAATAATGGCA 235 consensus_264#1 AGCGTAGGGAAATTAATATTCGACACTTTTAGAAGCAAACCAAACTTTGTTTGGCAGGTT 233 * * **** *** ** * ** *** ** * ** consensus_264#0 AATTTTAAATTGGAAAT--ATCATAATCGTGTAAATA-ATCATATCGTACAAATCGATTT 292 consensus_264#1 GATGCGATTTCAGGAATCGAAGATAATTTTTCCGATATATGCGATCGGACAATAAAATGT 293 ** * * * *** * ***** * *** ** **** **** ** * consensus_264#0 GCCATGCTGGTACTTAA-CATT-ATCCAATCAACCTTATATTTTT-CAATTATTTCGCAA 349 consensus_264#1 GCACTTTGGATGCAGAAACATGGAGTGAAAAAAGGCGACATTGTCGCAATCTGTTCACA- 352 ** * * * * ** *** * ** ** * *** * **** *** ** consensus_264#0 GCAATCTTC-TCATTGAATTCTGGTGCACTTATTTTCTTGATATGGAAATAAATACTTTT 408 consensus_264#1 -CAATCACCGTGATTGTATAAT----TCCTTTTCTTGCTACACTCTATCTAGGTGCCATT 407 ***** * * **** ** * *** * ** * * * ** * * ** consensus_264#0 G--AGATTAAGAAACGATCCACTAATC--CAGTACAAAGGAGTAAACCACAATTGTGTTT 464 consensus_264#1 GTCAATCCATGGGATCATCTGATGAATATTGATATGGCACGACATTTTATAACATTATCT 467 * * * * * *** * * ** * * ** * * * consensus_264#0 GAATACCATAAGGAAAACCTTCTCTTA-----GTTCCATAATATTCAAAATTGACTTATG 519 consensus_264#1 CAAC----CAAGGGTAATTTTCGTGAATGAAGGATCAGCAGAAATCGCATTAGAAGCGGC 523 ** **** ** *** * * ** * * ** * * ** consensus_264#0 TGAAAGTTGTACGCCTTTAGGCATACCCGTT--GTTCCAGATGAAAACATGATCAAACCA 577 consensus_264#1 AAAAAATTGAACTTCATCATACAAAACTAGTATGTTTTGGCTATTATCCTGG-CATAATA 582 *** *** ** * * * ** * * * *** * * * * ** ** * * consensus_264#0 GTATGTGAGGGATCGTCAATATCAGTGCATTGAAAATTAGCTACAGTTGATTTATCATGA 637 consensus_264#1 CCATTTTCGGAGACATTAAAATAT---CATGATAAATCAACTGTAGCTAATTT-TCA--A 636 ** * ** * * ** ** *** **** * ** ** * **** *** * consensus_264#0 TATTTTAATGTCTCCGAAAA 657 consensus_264#1 TGCACTGATATTGACG---- 652 * * ** * ** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |