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Apis mellifera
cluster # 264 cluster # 264       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_264#0 length = 657 sequences # 2  
consensus_264#1 length = 652 sequences # 3  

consensusID : consensus_264#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 657
fasta sequence
                              [CAGCTCACCAGTTTGATTCGGACCAAGCGTTTTTCCTGTTTCGATATCTATAATTTTTATTTGGCAATTTGGAATCACAATGCCACAAGAACCACTTGTAGCAATTGATGATTGTATGGTAATTATACCACCTAATTCTGTCATGCCATATGCCTGTATAATCATAGTATTTGATAAATATTTTTTTATTATATCTTGAGTTTCTCGATTCAATGCAGATCCACCAATAATGGCAAATTTTAAATTGGAAATATCATAATCGTGTAAATAATCATATCGTACAAATCGATTTGCCATGCTGGTACTTAACATTATCCAATCAACCTTATATTTTTCAATTATTTCGCAAGCAATCTTCTCATTGAATTCTGGTGCACTTATTTTCTTGATATGGAAATAAATACTTTTGAGATTAAGAAACGATCCACTAATCCAGTACAAAGGAGTAAACCACAATTGTGTTTGAATACCATAAGGAAAACCTTCTCTTAGTTCCATAATATTCAAAATTGACTTATGTGAAAGTTGTACGCCTTTAGGCATACCCGTTGTTCCAGATGAAAACATGATCAAACCAGTATGTGAGGGATCGTCAATATCAGTGCATTGAAAATTAGCTACAGTTGATTTATCATGATATTTTAATGTCTCCGAAAA]

[+] EMBL BE844586             [CAGCTCACCAGTTTGATTCGGACCAAGCGTTTTTCCTGTTTCGATATCTATAATTTTTATTTGGCAATTTGGAATCACAATGCCACAAGAACCACTTGTAGCAATTGATGATTGTATGGTAATTATACCACCTAATTCTGTCATGCCATATGCCTGTATAATCATAGTATTTGATAAATATTTTTTTATTATATCTTGAGTTTCTCGATTCAATGCAGATCCACCAATAATGGCAAATTTTAAATTGGAAATATCATAATCGTGTAAATAATCATATCGTACAAATCGATTTGCCATGCTGGTACTTAACATTATCCAATCAACCTTATATTTTTCAATTATTTCGCAAGCAATCTTCTCATTGAATTCTGGTGCACTTATTTTCTTGATATGGAAATAAATACTTTTGAGATTAAGAAACGATCCACTAATCCAGTACAAAGGAGTAAACCACAATTGTGTTTGAATACCATAAGGAAAACCTTCTCTTAGTTCCATAATATTCAAAATTGACTTATGTGAAAGTTGTACGCCTTTAGGCATACCCGTTGTTCCAGATGAAAACATGATCAAACCAGTATGTGAGGGATCGTCAATATCAGTGCATTGAAAATTAGCTACAGTTGATTTATC                        ]
[+] EMBL BE844665             [                                                    ATTTTTATTTGGCAATTTGGAATCACAATGCCACAAGAACCACTTGTAGCAATTGATGATTGTATGGTAATTATACCACCTAATTCTGTCATGCCATATGCCTGTATAATCATAGTATTTGATAAATATTTTTTTATTATATCTTGAGTTTCTCGATTCAATGCAGATCCACCAATAATGGCAAATTTTAAATTGGAAATATCATAATCGTGTAAATAATCATATCGTACAAATCGATTTGCCATGCTGGTACTTAACATTATCCAATCAACCTTATATTTTTCAATTATTTCGCAAGCAATCTTCTCATTGAATTCTGGTGCACTTATTTTCTTGATATGGAAATAAATACTTTTGAGATTAAGAAACGATCCACTAATCCAGTACAAAGGAGTAAACCACAATTGTGTTTGAATACCATAAGGAAAACCTTCTCTTAGTTCCATAATATTCAAAATTGACTTATGTGAAAGTTGTACGCCTTTAGGCATACCCGTTGTTCCAGATGAAAACATGATCAAACCAGTATGTGAGGGATCGTCAATATCAGTGCATTGAAAATTAGCTACAGTTGATTTATCATGATATTTTAATGTCTCCGAAAA]


>consensus_264#0 CAGCTCACCAGTTTGATTCGGACCAAGCGTTTTTCCTGTTTCGATATCTATAATTTTTAT TTGGCAATTTGGAATCACAATGCCACAAGAACCACTTGTAGCAATTGATGATTGTATGGT AATTATACCACCTAATTCTGTCATGCCATATGCCTGTATAATCATAGTATTTGATAAATA TTTTTTTATTATATCTTGAGTTTCTCGATTCAATGCAGATCCACCAATAATGGCAAATTT TAAATTGGAAATATCATAATCGTGTAAATAATCATATCGTACAAATCGATTTGCCATGCT GGTACTTAACATTATCCAATCAACCTTATATTTTTCAATTATTTCGCAAGCAATCTTCTC ATTGAATTCTGGTGCACTTATTTTCTTGATATGGAAATAAATACTTTTGAGATTAAGAAA CGATCCACTAATCCAGTACAAAGGAGTAAACCACAATTGTGTTTGAATACCATAAGGAAA ACCTTCTCTTAGTTCCATAATATTCAAAATTGACTTATGTGAAAGTTGTACGCCTTTAGG CATACCCGTTGTTCCAGATGAAAACATGATCAAACCAGTATGTGAGGGATCGTCAATATC AGTGCATTGAAAATTAGCTACAGTTGATTTATCATGATATTTTAATGTCTCCGAAAA



consensusID : consensus_264#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 652
fasta sequence
                              [GCTTTGATAAATTAAAATCAACTTATTCTGATTTTTTTAGTGTAACTTTTATAATAATCATCAATATGTGCATCGATGACAAGAAAGATGATAATACAGAATTAGACAGAATGTTTACAATCGAAAACAACGTGCTGAAAGGAAGAGTGATATCGAATGATAATGGATATACTAGCGTAGGGAAATTAATATTCGACACTTTTAGAAGCAAACCAAACTTTGTTTGGCAGGTTGATGCGATTTCAGGAATCGAAGATAATTTTTCCGATATATGCGATCGGACAATAAAATGTGCACTTTGGATGCAGAAACATGGAGTGAAAAAAGGCGACATTGTCGCAATCTGTTCACACAATCACCGTGATTGTATAATTCCTTTTCTTGCTACACTCTATCTAGGTGCCATTGTCAATCCATGGGATCATCTGATGAATATTGATATGGCACGACATTTTATAACATTATCTCAACCAAGGGTAATTTTCGTGAATGAAGGATCAGCAGAAATCGCATTAGAAGCGGCAAAAAATTGAACTTCATCATACAAAACTAGTATGTTTTGGCTATTATCCTGGCATAATACCATTTTCGGAGACATTAAAATATCATGATAAATCAACTGTAGCTAATTTTCAATGCACTGATATTGACG]

[+] EMBL BE844471             [GCTTTGATAAATTAAAATCAACTTATTCTGATTTTTTTAGTGTAACTTTTATAATAATCATCAATATGTGCATCGATGACAAGAAAGATGATAATACAGAATTAGACAGAATGTTTACAATCGAAAACAACGTGCTGAAAGGAAGAGTGATATCGAATGATAATGGATATACTAGCGTAGGGAAATTAATATTCGACACTTTTAGAAGCAAACCAAACTTTGTTTGGCAGGTTGATGCGATTTCAGGAATCGAAGATAATTTTTCCGATATATGCGATCGGACAATAAAATGTGCACTTTGGATGCAGAAACATGGAGTGAAAAAAGGCGACATTGTCGCAATCTGTTCACACAATCACCGTGATTGTATAATTCCTTTTCTTGCTACACTCTATCTAGGTGCCATTGTCAATCCATGGGATCATCTGATGAATATTGATATGGCACGACATTTTATAACATTATCTCAACCAAAAGTAATTTTCGTGAATGAAGGATCAGCAGAAATCGCATTAGAAGCGGCAAAAAATTGAACTTCATCATACAAAACTAGTATGTTTTGGCTATTATCCTGG                                                                             ]
[+] EMBL BE844623             [GCTTTGATAAATTAAAATCAACTTATTCTGATTTTTTTAGTGTAACTTTTATAATAATCATCAATATGTGCATCGATGACAAGAAAGATGATAATACAGAATTAGACAGAATGTTTACAATCGAAAACAACGTGCTGAAAGGAAGAGTGATATCGAATGATAATGGATATACTAGCGTAGGGAAATTAATATTCGACACTTTTAGAAGCAAACCAAACTTTGTTTGGCAGGTTGATGCGATTTCAGGAATCGAAGATAATTTTTCCGATATATGCGATCGGACAATAAAATGTGCACTTTGGATGCAGAAACATGGAGTGAAAAAAGGCGACATTGTCGCAATCTGTTCACACAATCACCGTGATTGTATAATTCCTTTTCTTGCTACACTCTATCTAGGTGCCATTGTCAATCCATGGGATCATCTGATGAATATTGATATGGCACGACATTTTATAACATT                                                                                                                                                                                             ]
[+] EMBL BE844584             [                          TCTGATTTTTTTAGTGTAACTTTTATAATAATCATCAATATGTGCATCGATGACAAGAAAGATGATAATACAGAATTAGACAGAATGTTTACAATCGAAAACAACGTGCTGAAAGGAAGAGTGATATCGAATGATAATGGATATACTAGCGTAGGGAAATTAATATTCGACACTTTTAGAAGCAAACCAAACTTTGTTTGGCAGGTTGATGCGATTTCAGGAATCGAAGATAATTTTTCCGATATATGCGATCGGACAATAAAATGTGCACTTTGGATGCAGAAACATGGAGTGAAAAAAGGCGACATTGTCGCAATCTGTTCACACAATCACCGTGATTGTATAATTCCTTTTCTTGCTACACTCTATCTAGGTGCCATTGTCAATCCATGGGATCATCTGATGAATATTGATATGGCACGACATTTTATAACATTATCTCAACCAAGGGTAATTTTCGTGAATGAAGGATCAGCAGAAATCGCATTAGAAGCGGC AAAAATTGAACTTCATCATACAAAACTAGTATGTTTTGGCTATTATCCTGGCATAATACCATTTTCGGAGACATTAAAATATCATGATAAATCAACTGTAGCTAATTTTCAATGCACTGATATTGACG]


>consensus_264#1 GCTTTGATAAATTAAAATCAACTTATTCTGATTTTTTTAGTGTAACTTTTATAATAATCA TCAATATGTGCATCGATGACAAGAAAGATGATAATACAGAATTAGACAGAATGTTTACAA TCGAAAACAACGTGCTGAAAGGAAGAGTGATATCGAATGATAATGGATATACTAGCGTAG GGAAATTAATATTCGACACTTTTAGAAGCAAACCAAACTTTGTTTGGCAGGTTGATGCGA TTTCAGGAATCGAAGATAATTTTTCCGATATATGCGATCGGACAATAAAATGTGCACTTT GGATGCAGAAACATGGAGTGAAAAAAGGCGACATTGTCGCAATCTGTTCACACAATCACC GTGATTGTATAATTCCTTTTCTTGCTACACTCTATCTAGGTGCCATTGTCAATCCATGGG ATCATCTGATGAATATTGATATGGCACGACATTTTATAACATTATCTCAACCAAGGGTAA TTTTCGTGAATGAAGGATCAGCAGAAATCGCATTAGAAGCGGCAAAAAATTGAACTTCAT CATACAAAACTAGTATGTTTTGGCTATTATCCTGGCATAATACCATTTTCGGAGACATTA AAATATCATGATAAATCAACTGTAGCTAATTTTCAATGCACTGATATTGACG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_264#0      CAGCTCACCAGTTTGATTCGGACCAAGC-GTTTTTCCTGTTTCGATATCTATAATTTTTA 59
consensus_264#1      GCTTTGATAAATTAAAATCAACTTATTCTGATTTTTTTAGTGTAACTTTTATAATAATCA 60
                         * *  * **  * **     *  * * ****  *  *   *  * ******  * *

consensus_264#0      TTTGGCAATTTGGAATCACAATGCCACAAGAACCACTTGTAGCAATTGATGATTGTATGG 119
consensus_264#1      T----CAATATGTG-CATCGATGACAAGAAAGATGATAATACAGAATTA-GACAGAATGT 114
                     *    **** **      * *** **  * *     *  **   * * * **  * *** 

consensus_264#0      TAATTATACCACCTAA--TTCTGTCATGCCATATGCCTGTATAATCATAGTATTTG-ATA 176
consensus_264#1      TTACAATCGAAAACAACGTGCTGAAAGGAAGAGTGA-TATCGAATGATAATGGATATACT 173
                     * *  **   *   **  * ***  * *     **  * *  *** *** *   *  *  

consensus_264#0      AATATTTTTTTATTA-TATCTTGAGTTTCTCGATTCAATGCAGATCCACCAATAATGGCA 235
consensus_264#1      AGCGTAGGGAAATTAATATTCGACACTTTTAGAAGCAAACCAAACTTTGTTTGGCAGGTT 233
                     *   *      **** ***       ** * **  ***  ** *            **  

consensus_264#0      AATTTTAAATTGGAAAT--ATCATAATCGTGTAAATA-ATCATATCGTACAAATCGATTT 292
consensus_264#1      GATGCGATTTCAGGAATCGAAGATAATTTTTCCGATATATGCGATCGGACAATAAAATGT 293
                      **   *  *  * ***  *  *****  *    *** **   **** ****    ** *

consensus_264#0      GCCATGCTGGTACTTAA-CATT-ATCCAATCAACCTTATATTTTT-CAATTATTTCGCAA 349
consensus_264#1      GCACTTTGGATGCAGAAACATGGAGTGAAAAAAGGCGACATTGTCGCAATCTGTTCACA- 352
                     **  *   * * *  ** ***  *   **  **    * *** *  ****   *** ** 

consensus_264#0      GCAATCTTC-TCATTGAATTCTGGTGCACTTATTTTCTTGATATGGAAATAAATACTTTT 408
consensus_264#1      -CAATCACCGTGATTGTATAAT----TCCTTTTCTTGCTACACTCTATCTAGGTGCCATT 407
                      *****  * * **** **  *      *** * **  *    *  *  **  * *  **

consensus_264#0      G--AGATTAAGAAACGATCCACTAATC--CAGTACAAAGGAGTAAACCACAATTGTGTTT 464
consensus_264#1      GTCAATCCATGGGATCATCTGATGAATATTGATATGGCACGACATTTTATAACATTATCT 467
                     *  *    * *  *  ***   * *       **         *    * **   * * *

consensus_264#0      GAATACCATAAGGAAAACCTTCTCTTA-----GTTCCATAATATTCAAAATTGACTTATG 519
consensus_264#1      CAAC----CAAGGGTAATTTTCGTGAATGAAGGATCAGCAGAAATCGCATTAGAAGCGGC 523
                      **      ****  **  ***    *     * **   *  * **  * * **      

consensus_264#0      TGAAAGTTGTACGCCTTTAGGCATACCCGTT--GTTCCAGATGAAAACATGATCAAACCA 577
consensus_264#1      AAAAAATTGAACTTCATCATACAAAACTAGTATGTTTTGGCTATTATCCTGG-CATAATA 582
                       *** *** **  * * *  ** * *   *  ***   * *   * * **  ** *  *

consensus_264#0      GTATGTGAGGGATCGTCAATATCAGTGCATTGAAAATTAGCTACAGTTGATTTATCATGA 637
consensus_264#1      CCATTTTCGGAGACATTAAAATAT---CATGATAAATCAACTGTAGCTAATTT-TCA--A 636
                       ** *  **   * * ** **     ***   **** * **  ** * **** ***  *

consensus_264#0      TATTTTAATGTCTCCGAAAA 657
consensus_264#1      TGCACTGATATTGACG---- 652
                     *    * ** *   **    




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)