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Apis mellifera
cluster # 2657 cluster # 2657       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2657#0 length = 406 sequences # 1  
 consensus_2657#1 length = 403 sequences # 1  
consensusID : consensus_2657#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 406
fasta sequence 
                              [AGCTGGGTGCAGGAGGACGCCGCAGCACCAAGTGACCACCTCCGATCTCGCCCTCTCCAACGACGACGAGTGCGACAACCAGGATTACGAGGACGAGTTGGAGAACGGGCGTGGACGTAGGCACAGCTCGCCAGGTGGCTCGAGGGGGAACCCCAGGGATTACGGCCATCATCATCTTCATCCGGACAATTTGGAACTCGCGCACAAGCTCTCGCGGAGCTTCGACATGCAGGAGGCTCAGCTCCTCGAGGAGGGTGGCTCTGGTGCCGCTACGGCGGGTGCTGGGGGCGCGGGTGGCCCGCCACGAAGACATCACAGCGCTCAGAGATTGGCCAGGAGCGAAATATCTGAGAGAAGGGAAGAGGACGGAGCGTTGGTGGTACCCGATCACCAGGGCAACCTGAGG]

[+] EMBL BI516501             [AGCTGGGTGCAGGAGGACGCCGCAGCACCAAGTGACCACCTCCGATCTCGCCCTCTCCAACGACGACGAGTGCGACAACCAGGATTACGAGGACGAGTTGGAGAACGGGCGTGGACGTAGGCACAGCTCGCCAGGTGGCTCGAGGGGGAACCCCAGGGATTACGGCCATCATCATCTTCATCCGGACAATTTGGAACTCGCGCACAAGCTCTCGCGGAGCTTCGACATGCAGGAGGCTCAGCTCCTCGAGGAGGGTGGCTCTGGTGCCGCTACGGCGGGTGCTGGGGGCGCGGGTGGCCCGCCACGAAGACATCACAGCGCTCAGAGATTGGCCAGGAGCGAAATATCTGAGAGAAGGGAAGAGGACGGAGCGTTGGTGGTACCCGATCACCAGGGCAACCTGAGG]




>consensus_2657#0
AGCTGGGTGCAGGAGGACGCCGCAGCACCAAGTGACCACCTCCGATCTCGCCCTCTCCAA
CGACGACGAGTGCGACAACCAGGATTACGAGGACGAGTTGGAGAACGGGCGTGGACGTAG
GCACAGCTCGCCAGGTGGCTCGAGGGGGAACCCCAGGGATTACGGCCATCATCATCTTCA
TCCGGACAATTTGGAACTCGCGCACAAGCTCTCGCGGAGCTTCGACATGCAGGAGGCTCA
GCTCCTCGAGGAGGGTGGCTCTGGTGCCGCTACGGCGGGTGCTGGGGGCGCGGGTGGCCC
GCCACGAAGACATCACAGCGCTCAGAGATTGGCCAGGAGCGAAATATCTGAGAGAAGGGA
AGAGGACGGAGCGTTGGTGGTACCCGATCACCAGGGCAACCTGAGG

consensusID : consensus_2657#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence 
                              [TCAATGACGAATAATTATTCTAAAATCGTATCAAAATTACTAACGAGTCAAAAATTTTACCTGTGCTCGAGAAACGCGCGTAGTATAAATAAAATTGGACGGATATCCTTTCAATGACGAATAATTATTCTAAAATCAAAATTAACGAGTCAAAAATAAGCGTTGAAAGAGAAAGAAAATTTTAAGAGGAGAATGTAAATGGAATCGATAGATGACGGTGGCTGTCACGATGCTGCAAGGTCGACCGGAAGCGAGACGGGGTGTTCAATTTCCGCCGAATGAAACGAAGCTGTGCCCGTTTCAGGAACTCGCGCACAAGCTCTCGCGGAGCTTCGACATGCAGGAGGCTCAGCTCCTCGAGGAGGGTGGCTCTGGTGCCGCTACGGCGGGTGCTGGGGGCGCG]

[+] EMBL BI515553             [TCAATGACGAATAATTATTCTAAAATCGTATCAAAATTACTAACGAGTCAAAAATTTTACCTGTGCTCGAGAAACGCGCGTAGTATAAATAAAATTGGACGGATATCCTTTCAATGACGAATAATTATTCTAAAATCAAAATTAACGAGTCAAAAATAAGCGTTGAAAGAGAAAGAAAATTTTAAGAGGAGAATGTAAATGGAATCGATAGATGACGGTGGCTGTCACGATGCTGCAAGGTCGACCGGAAGCGAGACGGGGTGTTCAATTTCCGCCGAATGAAACGAAGCTGTGCCCGTTTCAGGAACTCGCGCACAAGCTCTCGCGGAGCTTCGACATGCAGGAGGCTCAGCTCCTCGAGGAGGGTGGCTCTGGTGCCGCTACGGCGGGTGCTGGGGGCGCG]




>consensus_2657#1
TCAATGACGAATAATTATTCTAAAATCGTATCAAAATTACTAACGAGTCAAAAATTTTAC
CTGTGCTCGAGAAACGCGCGTAGTATAAATAAAATTGGACGGATATCCTTTCAATGACGA
ATAATTATTCTAAAATCAAAATTAACGAGTCAAAAATAAGCGTTGAAAGAGAAAGAAAAT
TTTAAGAGGAGAATGTAAATGGAATCGATAGATGACGGTGGCTGTCACGATGCTGCAAGG
TCGACCGGAAGCGAGACGGGGTGTTCAATTTCCGCCGAATGAAACGAAGCTGTGCCCGTT
TCAGGAACTCGCGCACAAGCTCTCGCGGAGCTTCGACATGCAGGAGGCTCAGCTCCTCGA
GGAGGGTGGCTCTGGTGCCGCTACGGCGGGTGCTGGGGGCGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2657#0      ------------------------------------------------------------
consensus_2657#1      TCAATGACGAATAATTATTCTAAAATCGTATCAAAATTACTAACGAGTCAAAAATTTTAC 60
                                                                                  

consensus_2657#0      --------------------------AGCTGGGTGCAGGAGGACGCCG---CAGCACCAA 31
consensus_2657#1      CTGTGCTCGAGAAACGCGCGTAGTATAAATAAAATTGGACGGATATCCTTTCAATGACGA 120
                                                *  *       *  ***   *    **    * *

consensus_2657#0      GTGACCACCTCCGATCTCGCCCTCTCCAA-CGACGACGAGTGC-----GACAACCAGGAT 85
consensus_2657#1      ATAATTATTCTAAAATCAAAATTAACGAGTCAAAAATAAGCGTTGAAAGAGAAAGAAAAT 180
                       * *  *      *        *  * *  * *  *  ** *      ** **  *  **

consensus_2657#0      TACGAGGACGAGTTGGAGAACGGGCGTGGACGTAGGCACAGCTCGCCAGGTGGCTCGAGG 145
consensus_2657#1      TTTAAG-AGGAGAATGTAAATGGAATCGATAGATGACGGTGGCTGTCACGATGCTGCAAG 239
                      *   ** * ***   *  ** **    *   *  * *   *   * ** *  ***  * *

consensus_2657#0      GGGAACCCCAGGGATTACGGCCATCATCATCTTCATCCGGACAA---------------- 189
consensus_2657#1      GTCGACCGGAAGCGAGACGGG-GTGTTCAATTTCCGCCGAATGAAACGAAGCTGTGCCCG 298
                      *   ***  * *    ****   *  ***  ***  *** *  *                

consensus_2657#0      --TTTGGAACTCGCGCACAAGCTCTCGCGGAGCTTCGACATGCAGGAGGCTCAGCTCCTC 247
consensus_2657#1      TTTCAGGAACTCGCGCACAAGCTCTCGCGGAGCTTCGACATGCAGGAGGCTCAGCTCCTC 358
                        *  *******************************************************

consensus_2657#0      GAGGAGGGTGGCTCTGGTGCCGCTACGGCGGGTGCTGGGGGCGCGGGTGGCCCGCCACGA 307
consensus_2657#1      GAGGAGGGTGGCTCTGGTGCCGCTACGGCGGGTGCTGGGGGCGCG--------------- 403
                      *********************************************               

consensus_2657#0      AGACATCACAGCGCTCAGAGATTGGCCAGGAGCGAAATATCTGAGAGAAGGGAAGAGGAC 367
consensus_2657#1      ------------------------------------------------------------
                                                                                  

consensus_2657#0      GGAGCGTTGGTGGTACCCGATCACCAGGGCAACCTGAGG 406
consensus_2657#1      ---------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)