cluster # 2662

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Apis mellifera
cluster # 2662 cluster # 2662 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2662#0 length = 577 sequences # 1

consensus_2662#1 length = 465 sequences # 1

consensusID : consensus_2662#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 577
fasta sequence

                              [AGAAATATATAAATAATTATTATGAATAAAATATATTTTTTACATATATTTATATATTTTTTTATATAATAATTTTAAAATGATATTCATTGGTTCATATTAAATTCATTTTATAGGAGAAGCAATAATATGTTACAAATGCAACAGCGAATACGATCCAAGGTGCGGCGATCCATTCGATCCGTACAGTCTTGGAACCGTGAATTGCAGTTTTCAACCACGCTTGGAGCATCTAAGTCATTTGGAGCCTACTCTTTGTCGAAAAATCAGCCAAAGAGGTATATCCAAAAAAATTATTTATTGTGTGTATAATATAGTTTTCGAAAATTATTTAATAAATTTTGTATCTGAAATATACAATAAATTATTCAAACTATTCATGAATTTTAACTATTGTTAAAATCAATATTATTGGCATCTGTTATTGAGTAAACATTACATTAACATTGTGATAATTAAATTTCAAAAGATTTAAACATTAAAGTAAAATAATATACATGTAAAATTCCTAAATTCATAACTCTGTTAAATATATAAAAAAATCACAATTTTTTTTTATATAAAGCTTATAAATATT]

[+] EMBL BI514608             [AGAAATATATAAATAATTATTATGAATAAAATATATTTTTTACATATATTTATATATTTTTTTATATAATAATTTTAAAATGATATTCATTGGTTCATATTAAATTCATTTTATAGGAGAAGCAATAATATGTTACAAATGCAACAGCGAATACGATCCAAGGTGCGGCGATCCATTCGATCCGTACAGTCTTGGAACCGTGAATTGCAGTTTTCAACCACGCTTGGAGCATCTAAGTCATTTGGAGCCTACTCTTTGTCGAAAAATCAGCCAAAGAGGTATATCCAAAAAAATTATTTATTGTGTGTATAATATAGTTTTCGAAAATTATTTAATAAATTTTGTATCTGAAATATACAATAAATTATTCAAACTATTCATGAATTTTAACTATTGTTAAAATCAATATTATTGGCATCTGTTATTGAGTAAACATTACATTAACATTGTGATAATTAAATTTCAAAAGATTTAAACATTAAAGTAAAATAATATACATGTAAAATTCCTAAATTCATAACTCTGTTAAATATATAAAAAAATCACAATTTTTTTTTATATAAAGCTTATAAATATT]




>consensus_2662#0
AGAAATATATAAATAATTATTATGAATAAAATATATTTTTTACATATATTTATATATTTT
TTTATATAATAATTTTAAAATGATATTCATTGGTTCATATTAAATTCATTTTATAGGAGA
AGCAATAATATGTTACAAATGCAACAGCGAATACGATCCAAGGTGCGGCGATCCATTCGA
TCCGTACAGTCTTGGAACCGTGAATTGCAGTTTTCAACCACGCTTGGAGCATCTAAGTCA
TTTGGAGCCTACTCTTTGTCGAAAAATCAGCCAAAGAGGTATATCCAAAAAAATTATTTA
TTGTGTGTATAATATAGTTTTCGAAAATTATTTAATAAATTTTGTATCTGAAATATACAA
TAAATTATTCAAACTATTCATGAATTTTAACTATTGTTAAAATCAATATTATTGGCATCT
GTTATTGAGTAAACATTACATTAACATTGTGATAATTAAATTTCAAAAGATTTAAACATT
AAAGTAAAATAATATACATGTAAAATTCCTAAATTCATAACTCTGTTAAATATATAAAAA
AATCACAATTTTTTTTTATATAAAGCTTATAAATATT

consensusID : consensus_2662#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence

                              [AGTCATTTCGGACGTGAGAAAGGAGATCAAAGTCGATTAAACACTGCCATCAAATAAATTCTCTTCATTTGTTCCCAAGTTATCTATTATTTATCATTGTTTGATTCTCAAGGTGAATCTATTTTATAAAAATTGAAAACATTTAATCGAATCTGCCGCGTGCAAATTTTCCATGCAGCGGGGGTGGAGGCAACACGTCCGAAGTGACTGACTGCAACGTGATTAGTTGAAACACATGGTCCGGTGATCGTGATCATGATTGCAAATCGACTCTCGCTGATCGTCACCCTCGTCTTCGTGGTACTGCTGTCGACCATTCATTCCGGAGAAGCAATAATATGTTACAAATGCAACAGCGAATACGATCCAAGGTGCGGCGATCCATTCGATCCGTACAGTCTTGGAACCGTGAATTGCAGTTTTCAACCACGCTTGGAGCATCTAAGTCATTTGGAGCCTACTCTT]

[+] EMBL BI513577             [AGTCATTTCGGACGTGAGAAAGGAGATCAAAGTCGATTAAACACTGCCATCAAATAAATTCTCTTCATTTGTTCCCAAGTTATCTATTATTTATCATTGTTTGATTCTCAAGGTGAATCTATTTTATAAAAATTGAAAACATTTAATCGAATCTGCCGCGTGCAAATTTTCCATGCAGCGGGGGTGGAGGCAACACGTCCGAAGTGACTGACTGCAACGTGATTAGTTGAAACACATGGTCCGGTGATCGTGATCATGATTGCAAATCGACTCTCGCTGATCGTCACCCTCGTCTTCGTGGTACTGCTGTCGACCATTCATTCCGGAGAAGCAATAATATGTTACAAATGCAACAGCGAATACGATCCAAGGTGCGGCGATCCATTCGATCCGTACAGTCTTGGAACCGTGAATTGCAGTTTTCAACCACGCTTGGAGCATCTAAGTCATTTGGAGCCTACTCTT]




>consensus_2662#1
AGTCATTTCGGACGTGAGAAAGGAGATCAAAGTCGATTAAACACTGCCATCAAATAAATT
CTCTTCATTTGTTCCCAAGTTATCTATTATTTATCATTGTTTGATTCTCAAGGTGAATCT
ATTTTATAAAAATTGAAAACATTTAATCGAATCTGCCGCGTGCAAATTTTCCATGCAGCG
GGGGTGGAGGCAACACGTCCGAAGTGACTGACTGCAACGTGATTAGTTGAAACACATGGT
CCGGTGATCGTGATCATGATTGCAAATCGACTCTCGCTGATCGTCACCCTCGTCTTCGTG
GTACTGCTGTCGACCATTCATTCCGGAGAAGCAATAATATGTTACAAATGCAACAGCGAA
TACGATCCAAGGTGCGGCGATCCATTCGATCCGTACAGTCTTGGAACCGTGAATTGCAGT
TTTCAACCACGCTTGGAGCATCTAAGTCATTTGGAGCCTACTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2662#0      AGAAATATATAA-ATAATTATTATGAATAAAATATATTTTTTACATATATTTATATATTT 59
consensus_2662#1      AGTCATTTCGGACGTGAGAAAGGAGATCAAAGTCGATTAAACACTGCCATCAAATAAATT 60
                      **  ** *   *  * *  *    **  *** *  ***    **    **  *   * **

consensus_2662#0      TTTTATATAATAATTTTAAAATGATATTCATTGGTTCATATTAAATTCATTTTATAGGAG 119
consensus_2662#1      CTCTTCAT--TTGTTCCCAAGT--TATCTATTA-TTTATCATTGTTTGATTCTCAAGGTG 115
                       * *  **  *  **   ** *  ***  ***  ** **  *   ** *** *  *** *

consensus_2662#0      AAGCAATAATATGTTACAAATGCAACAGCGAATACGATCCAAGGTGCGGCGATCCATTCG 179
consensus_2662#1      AATCTAT--TTTATAAAAATTGAAA----ACATTTAATCGAATCTGCCGCG-TGCAAATT 168
                      ** * **  * * * * ** ** **      **   *** **  *** *** * **    

consensus_2662#0      ATCCGTACAGTCTTGGAACCGTGAATTGCAGTTTTCAACCACGCTTGGAGCATCTAAGTC 239
consensus_2662#1      TTCCATGCAGC---GGGGGTGGAGGCAACACGTCCGAAGTG-ACTGACTGCAACGTGATT 224
                       *** * ***    **    *       **  *   **     **    *** *    * 

consensus_2662#0      ATTTGGAGCCTACTCTTTGTCGAAAAATCAGCCAAAGAGGTATATCCAAAAAAATTATTT 299
consensus_2662#1      AGTTGAAACACATGGTCCGGTGA--------TCGTGATCATGATTGCAAATCGACT-CTC 275
                      * *** * *  *   *  *  **         *       *   * ****   * *  * 

consensus_2662#0      ATTGTGTGTATAATATAGTTTTCGAAAATTATTTAATAAATTTTGTATCTGAAATATACA 359
consensus_2662#1      GCTGATCGT-CACCCTCGTCTTCGTGG-TACTGCTGTCGACCATTCATTCCGGAGAAGCA 333
                        **   **  *   * ** ****    *  *    *  *   *  **     * *  **

consensus_2662#0      ATAAATTATTCAAACTATTCATGAATTTTAACTATTGTTAAAATCAATATTATTGGCATC 419
consensus_2662#1      ATAATATGTTACAAATGC-----------AACAGCGAATACGATCCAAGGTGCGGCGATC 382
                      ****  * **  ** *             ***      **  *** *   *   *  ***

consensus_2662#0      TGTTATTGAGTAAACATTACATTAACATTGTGATAATTAAATTTCAA--AAGATTTAAAC 477
consensus_2662#1      C---ATTCGATCCGTACAGTCTTGGAACCGTGAATTGCAGTTTTCAACCACGCTTGGAGC 439
                          ***   *    *     **   *  ****     *  ******  * * **  * *

consensus_2662#0      ATTAAAGTAAAATAATATACATGTAAAATTCCTAAATTCATAACTCTGTTAAATATATAA 537
consensus_2662#1      ATCTAAGTCATTTGGAGCCTACTCTT---------------------------------- 465
                      **  **** *  *       *                                       

consensus_2662#0      AAAAATCACAATTTTTTTTTATATAAAGCTTATAAATATT 577
consensus_2662#1      ----------------------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)