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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2663#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence
[CTTTACAATTGGGCTGCTATCATAACTGCAATTTTATTAATTCTTCTAATTGGAAAACAGGAAAATTATAGTAAACAGTTTGTTGATTAATGCTAATTTTTCTTTGGATCAAGCCCAATGAGGACGAAAATATCGATAAAGCAGAAGAAGAAGAAGGCACTTCGTCTATTGATCTGCATGCGGTACCTATTTCTGCAAATTAAAATTTTGCTGCTTAATGATCTTTTTCTGTTTTTTATATTCCTTGTCTTTCATTACTAACAGTAGGATAGTTGTATGGTAGTTAAAATATTAACTCAACATATCATAAATAACATAATACAATATAATGTATAAGTTTTGGGATAAACTTTTAGCAGGAAAGTGGAATTATATACGGAGGTTGTGAAGGACCAAATGCAATGTATGTAAAACTTGTTAGCAGTGATGGACATGAATTTATTGTTAAACGTGAACATGCTTTAACTAGTGGAACAATAAAAGCAATGTTAAGTGGTCCTGGACAGTTTGCAGAAAATGAAGCTAATGAAGTTAATTTTCGAGAAATTCCATCTCATGTATTACAAA]
[+] EMBL BI504775 [CTTTACAATTGGGCTGCTATCATAACTGCAATTTTATTAATTCTTCTAATTGGAAAACAGGAAAATTATAGTAAACAGTTTGTTGATTAATGCTAATTTTTCTTTGGATCAAGCCCAATGAGGACGAAAATATCGATAAAGCAGAAGAAGAAGAAGGCACTTCGTCTATTGATCTGCATGCGGTACCTATTTCTGCAAATTAAAATTTTGCTGCTTAATGATCTTTTTCTGTTTTTTATATTCCTTGTCTTTCATTACTAACAGTAGGATAGTTGTATGGTAGTTAAAATATTAACTCAACATATCATAAATAACATAATACAATATAATGTATAAGTTTTGGGATAAACTTTTAGCAGGAAAGTGGAATTATATACGGAGGTTGTGAAGGACCAAATGCAATGTATGTAAAACTTGTTAGCAGTGATGGACATGAATTTATTGTTAAACGTGAACATGCTTTAACTAGTGGAACAATAAAAGCAATGTTAAGTGGTCCTGGACAGTTTGCAGAAAATGAAGCTAATGAAGTTAATTTTCGAGAAATTCCATCTCATGTATTACAAA]
consensusID : consensus_2663#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence
[TTTTTTTTTTTTCGTTGAGAAATATAAATATTCTATAGGACACAAACATGTCAAATGATGTGAACACCCAAGCTGATAAGCCCAATGAGGACGAAAATATCGATAAAGCAGAAGAAGAAGAAGGCACTTCGTCTATTGATCTGCATGCGCAGGAAAGTGGAATTATATACGGAGGTTGTGAAGGACCAAATGCAATGTATGTAAAACTTGTTAGCAGTGATGGACATGAATTTATTGTTAAACGTGAACATGCTTTAACTAGTGGAACAATAAAAGCAATGTTAAGTGGTCCTGGACAGTTTGCAAAAAATGAAGCTAATGAAGTTAATTTTCGNGAAATTCCATCTCATGTATTACAAAAGGTTTGCATGTATTTTACCTACAAAGTACGCTATACAAATAG]
[+] EMBL BI502898 [TTTTTTTTTTTTCGTTGAGAAATATAAATATTCTATAGGACACAAACATGTCAAATGATGTGAACACCCAAGCTGATAAGCCCAATGAGGACGAAAATATCGATAAAGCAGAAGAAGAAGAAGGCACTTCGTCTATTGATCTGCATGCGCAGGAAAGTGGAATTATATACGGAGGTTGTGAAGGACCAAATGCAATGTATGTAAAACTTGTTAGCAGTGATGGACATGAATTTATTGTTAAACGTGAACATGCTTTAACTAGTGGAACAATAAAAGCAATGTTAAGTGGTCCTGGACAGTTTGCAAAAAATGAAGCTAATGAAGTTAATTTTCGNGAAATTCCATCTCATGTATTACAAAAGGTTTGCATGTATTTTACCTACAAAGTACGCTATACAAATAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2663#0 CTTTACAATTGGGCTGCTATCATAACTGCAATTTTATTAATTCTTCTAATTGGAAAACAG 60
consensus_2663#1 ------------------------------------------------------------
consensus_2663#0 GAAAATTATAGTAAACAGTTTGTTGATTAATGCTAATTTTTCTTTGGATCAAGCCCAATG 120
consensus_2663#1 ------------------------------------------------------------
consensus_2663#0 AGGACGAAAATATCGATAAAGCAGAAGAAGAAGAAGGCACTTCGTCTATTGATCTGCATG 180
consensus_2663#1 ------------------------------------------------------------
consensus_2663#0 CGGTACCTATTTCTGCAAATTAAAATTTTGCTGCTTAATGATCTTTTTCTGTTTTTTATA 240
consensus_2663#1 -----------------------TTTTTTTTTTTTCGTTGAGAAATATAAATATTCTATA 37
**** * * *** * * * ** ****
consensus_2663#0 TTCCTTGTCTTTCATTACTAACAGTAGGATAGTTGTATGGTAGTTAAAATATTAACTCAA 300
consensus_2663#1 GGACACAAACATGTCAAATGATGTGAACACCCAAGC-TGATAAGCCCAATGAGGACGAAA 96
* * * * * * * * ** ** *** ** **
consensus_2663#0 CATATCATAAATAACATAATACAATATAATGTATAAGTTTTGGGATAAACTTTTAGCAGG 360
consensus_2663#1 -ATATCG-ATAAAGCAGAAGAAGAAGAAGGCACTTCGTCTATTGATCTGCATGC-GCAGG 153
***** * * * ** ** * * * * ** * *** * * *****
consensus_2663#0 AAAGTGGAATTATATACGGAGGTTGTGAAGGACCAAATGCAATGTATGTAAAACTTGTTA 420
consensus_2663#1 AAAGTGGAATTATATACGGAGGTTGTGAAGGACCAAATGCAATGTATGTAAAACTTGTTA 213
************************************************************
consensus_2663#0 GCAGTGATGGACATGAATTTATTGTTAAACGTGAACATGCTTTAACTAGTGGAACAATAA 480
consensus_2663#1 GCAGTGATGGACATGAATTTATTGTTAAACGTGAACATGCTTTAACTAGTGGAACAATAA 273
************************************************************
consensus_2663#0 AAGCAATGTTAAGTGGTCCTGGACAGTTTGCAGAAAATGAAGCTAATGAAGTTAATTTTC 540
consensus_2663#1 AAGCAATGTTAAGTGGTCCTGGACAGTTTGCAAAAAATGAAGCTAATGAAGTTAATTTTC 333
******************************** ***************************
consensus_2663#0 GAGAAATTCCATCTCATGTATTACAAA--------------------------------- 567
consensus_2663#1 GNGAAATTCCATCTCATGTATTACAAAAGGTTTGCATGTATTTTACCTACAAAGTACGCT 393
* *************************
consensus_2663#0 ----------
consensus_2663#1 ATACAAATAG 403
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |