These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2663#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [CTTTACAATTGGGCTGCTATCATAACTGCAATTTTATTAATTCTTCTAATTGGAAAACAGGAAAATTATAGTAAACAGTTTGTTGATTAATGCTAATTTTTCTTTGGATCAAGCCCAATGAGGACGAAAATATCGATAAAGCAGAAGAAGAAGAAGGCACTTCGTCTATTGATCTGCATGCGGTACCTATTTCTGCAAATTAAAATTTTGCTGCTTAATGATCTTTTTCTGTTTTTTATATTCCTTGTCTTTCATTACTAACAGTAGGATAGTTGTATGGTAGTTAAAATATTAACTCAACATATCATAAATAACATAATACAATATAATGTATAAGTTTTGGGATAAACTTTTAGCAGGAAAGTGGAATTATATACGGAGGTTGTGAAGGACCAAATGCAATGTATGTAAAACTTGTTAGCAGTGATGGACATGAATTTATTGTTAAACGTGAACATGCTTTAACTAGTGGAACAATAAAAGCAATGTTAAGTGGTCCTGGACAGTTTGCAGAAAATGAAGCTAATGAAGTTAATTTTCGAGAAATTCCATCTCATGTATTACAAA] [+] EMBL BI504775 [CTTTACAATTGGGCTGCTATCATAACTGCAATTTTATTAATTCTTCTAATTGGAAAACAGGAAAATTATAGTAAACAGTTTGTTGATTAATGCTAATTTTTCTTTGGATCAAGCCCAATGAGGACGAAAATATCGATAAAGCAGAAGAAGAAGAAGGCACTTCGTCTATTGATCTGCATGCGGTACCTATTTCTGCAAATTAAAATTTTGCTGCTTAATGATCTTTTTCTGTTTTTTATATTCCTTGTCTTTCATTACTAACAGTAGGATAGTTGTATGGTAGTTAAAATATTAACTCAACATATCATAAATAACATAATACAATATAATGTATAAGTTTTGGGATAAACTTTTAGCAGGAAAGTGGAATTATATACGGAGGTTGTGAAGGACCAAATGCAATGTATGTAAAACTTGTTAGCAGTGATGGACATGAATTTATTGTTAAACGTGAACATGCTTTAACTAGTGGAACAATAAAAGCAATGTTAAGTGGTCCTGGACAGTTTGCAGAAAATGAAGCTAATGAAGTTAATTTTCGAGAAATTCCATCTCATGTATTACAAA] consensusID : consensus_2663#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence [TTTTTTTTTTTTCGTTGAGAAATATAAATATTCTATAGGACACAAACATGTCAAATGATGTGAACACCCAAGCTGATAAGCCCAATGAGGACGAAAATATCGATAAAGCAGAAGAAGAAGAAGGCACTTCGTCTATTGATCTGCATGCGCAGGAAAGTGGAATTATATACGGAGGTTGTGAAGGACCAAATGCAATGTATGTAAAACTTGTTAGCAGTGATGGACATGAATTTATTGTTAAACGTGAACATGCTTTAACTAGTGGAACAATAAAAGCAATGTTAAGTGGTCCTGGACAGTTTGCAAAAAATGAAGCTAATGAAGTTAATTTTCGNGAAATTCCATCTCATGTATTACAAAAGGTTTGCATGTATTTTACCTACAAAGTACGCTATACAAATAG] [+] EMBL BI502898 [TTTTTTTTTTTTCGTTGAGAAATATAAATATTCTATAGGACACAAACATGTCAAATGATGTGAACACCCAAGCTGATAAGCCCAATGAGGACGAAAATATCGATAAAGCAGAAGAAGAAGAAGGCACTTCGTCTATTGATCTGCATGCGCAGGAAAGTGGAATTATATACGGAGGTTGTGAAGGACCAAATGCAATGTATGTAAAACTTGTTAGCAGTGATGGACATGAATTTATTGTTAAACGTGAACATGCTTTAACTAGTGGAACAATAAAAGCAATGTTAAGTGGTCCTGGACAGTTTGCAAAAAATGAAGCTAATGAAGTTAATTTTCGNGAAATTCCATCTCATGTATTACAAAAGGTTTGCATGTATTTTACCTACAAAGTACGCTATACAAATAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2663#0 CTTTACAATTGGGCTGCTATCATAACTGCAATTTTATTAATTCTTCTAATTGGAAAACAG 60 consensus_2663#1 ------------------------------------------------------------ consensus_2663#0 GAAAATTATAGTAAACAGTTTGTTGATTAATGCTAATTTTTCTTTGGATCAAGCCCAATG 120 consensus_2663#1 ------------------------------------------------------------ consensus_2663#0 AGGACGAAAATATCGATAAAGCAGAAGAAGAAGAAGGCACTTCGTCTATTGATCTGCATG 180 consensus_2663#1 ------------------------------------------------------------ consensus_2663#0 CGGTACCTATTTCTGCAAATTAAAATTTTGCTGCTTAATGATCTTTTTCTGTTTTTTATA 240 consensus_2663#1 -----------------------TTTTTTTTTTTTCGTTGAGAAATATAAATATTCTATA 37 **** * * *** * * * ** **** consensus_2663#0 TTCCTTGTCTTTCATTACTAACAGTAGGATAGTTGTATGGTAGTTAAAATATTAACTCAA 300 consensus_2663#1 GGACACAAACATGTCAAATGATGTGAACACCCAAGC-TGATAAGCCCAATGAGGACGAAA 96 * * * * * * * * ** ** *** ** ** consensus_2663#0 CATATCATAAATAACATAATACAATATAATGTATAAGTTTTGGGATAAACTTTTAGCAGG 360 consensus_2663#1 -ATATCG-ATAAAGCAGAAGAAGAAGAAGGCACTTCGTCTATTGATCTGCATGC-GCAGG 153 ***** * * * ** ** * * * * ** * *** * * ***** consensus_2663#0 AAAGTGGAATTATATACGGAGGTTGTGAAGGACCAAATGCAATGTATGTAAAACTTGTTA 420 consensus_2663#1 AAAGTGGAATTATATACGGAGGTTGTGAAGGACCAAATGCAATGTATGTAAAACTTGTTA 213 ************************************************************ consensus_2663#0 GCAGTGATGGACATGAATTTATTGTTAAACGTGAACATGCTTTAACTAGTGGAACAATAA 480 consensus_2663#1 GCAGTGATGGACATGAATTTATTGTTAAACGTGAACATGCTTTAACTAGTGGAACAATAA 273 ************************************************************ consensus_2663#0 AAGCAATGTTAAGTGGTCCTGGACAGTTTGCAGAAAATGAAGCTAATGAAGTTAATTTTC 540 consensus_2663#1 AAGCAATGTTAAGTGGTCCTGGACAGTTTGCAAAAAATGAAGCTAATGAAGTTAATTTTC 333 ******************************** *************************** consensus_2663#0 GAGAAATTCCATCTCATGTATTACAAA--------------------------------- 567 consensus_2663#1 GNGAAATTCCATCTCATGTATTACAAAAGGTTTGCATGTATTTTACCTACAAAGTACGCT 393 * ************************* consensus_2663#0 ---------- consensus_2663#1 ATACAAATAG 403 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |