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Apis mellifera
cluster # 271 cluster # 271       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_271#0 length = 452 sequences # 3  
consensus_271#1 length = 436 sequences # 2  

consensusID : consensus_271#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 452
fasta sequence
                              [GTCCGAGTCATCGACGGGCTCGAGTATACCAAAGTTAAATCTCTCCACCGCTCTGATGAGCCAGCCACCACCGAATTTCGGTGTCTCTCAAGTGTCTCCCGTCTCGATGTCCGCTTTGGTGTCAGCGGTCAGGTCACCAGCAGGTGGACAATTGCCACCTTCGGCCGGAGCACCTATGCCACCCATTCCTAACATGTCCAACATGTCAGGGATGCCTCCGTTGCCGAATATGCCTGGTAGCATGCCCACCATGCCTACCATGCCCAGCATGGCGGGGCCCATCAGACGACGTATCAGTGATAAATCCGCGCTTTCCTTGGCAGGAGGACTGTATGACGAGGGCACTGTAAGGCGCAGNGTAGCCGTCGATAGATCTGGAATAGATATTAACGAAGAAATTCAACGAAATAGGGAATTTTACAAGAACGCCGACGTCAGACCGCCGTTTACAT]

[+] EMBL BI512242             [GTCCGAGTCATCGACGGGCTCGAGTATACCAAAGTTAAATCTCTCCACCGCTCTGATGAGCCAGCCACCACCGAATTTCGGTGTCTCTCAAGTGTCTCCCGTCTCGATGTCCGCTTTGGTGTCAGCGGTCAGGTCACCAGCAGGTGGACAATTGCCACCTTCGGCCGGAGCACCTATGCCACCCATTCCTAACATGTCCAACATGTCAGGGATGCCTCCGTTGCCGAATATGCCTGGTAGCATGCCCACCATGCCTACCATGCCCAGCATGGCGGGGCCCATCAGACGACGTATCAGTGATAAATCCGCGCTTTCCTTGGCAGGAGGACTGTATGACGAGGGCACTGTAAGGCGCAGAGTAGCCGTCGATAGATCTGGAATAGATATTAACGAAGAAATTCAACGAAATAGGGAATTTTACAAGAACGCCGACGTCAGACCGCCGTTTACAT]
[+] EMBL BI512349             [GTCCGAGTCATCGACGGGCTCGAGTATACCAAAGTTAAATCTCTCCACCGCTCTGATGAGCCAGCCACCACCGAATTTCGGTGTCTCTCAAGTGTCTCCCGTCTCGATGTCCGCTTTGGTGTCAGCGGTCAGGTCACCAGCAGGTGGACAATTGCCACCTTCGGCCGGAGCACCTATGCCACCCATTCCTAACATGTCCAACATGTCAGGGATGCCTCCGTTGCCGAATATGCCTGGTAGCATGCCCACCATGCCTACCATGCCCAGCATGGCGGGGCCCATCAGACGACGTATCAGTGATAAATCCGCGCTTTCCTTGGCAGGAGGACTGTATGACGAGGGCACTGTAAGGCGCAGNGTAGCCGTCGATAGATCTGGAATAGATATTAACGAAGAAATTCAACGAAATAGGGAATTTTACAAGAACGCCGACGTCAGACCGCCGTTTAC  ]
[+] EMBL BI516664             [GTCCGAGTCATCGACGGGCTCGAGTATACCAAAGTTAAATCTCTCCACCGCTCTGATGAGCCAGCCACCACCGAATTTCGGTGTCTCTCAAGTGTCTCCCGTCTCGATGTCCGCTTTGGTGTCAGCGGTCAGGTCACCATCAGGTGGACAATTGCCACCTTCGGCCGGAGCACCTATGCCACCCATTCCTAACATGTCCAACATGTCAGGGATGCCTCCGTTGCCGAATATGCCTGGTAGCATGCCCACCATGCCTACCATGCCCATCATGGCGGGGCCCATCAGACGACGTATCAGTGATAAATCCGCGCTTTCCTTGGCAGGAGGACTGTATGACG                                                                                                                  ]


>consensus_271#0 GTCCGAGTCATCGACGGGCTCGAGTATACCAAAGTTAAATCTCTCCACCGCTCTGATGAG CCAGCCACCACCGAATTTCGGTGTCTCTCAAGTGTCTCCCGTCTCGATGTCCGCTTTGGT GTCAGCGGTCAGGTCACCAGCAGGTGGACAATTGCCACCTTCGGCCGGAGCACCTATGCC ACCCATTCCTAACATGTCCAACATGTCAGGGATGCCTCCGTTGCCGAATATGCCTGGTAG CATGCCCACCATGCCTACCATGCCCAGCATGGCGGGGCCCATCAGACGACGTATCAGTGA TAAATCCGCGCTTTCCTTGGCAGGAGGACTGTATGACGAGGGCACTGTAAGGCGCAGNGT AGCCGTCGATAGATCTGGAATAGATATTAACGAAGAAATTCAACGAAATAGGGAATTTTA CAAGAACGCCGACGTCAGACCGCCGTTTACAT



consensusID : consensus_271#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 436
fasta sequence
                              [TCCAAAGAAAAAAAAAGTATAAGTAAGTTTTTTTTATCATATACGAGATACGAAGATATAATATCGTCCCGAGAAAGGTGAAACGAAAGACATGTGAATTTAGAAATTGAATACTATTCGTAGGACTGTATGACGAGGGCACTGTAAGGCGCAGAGTAGCCGTCGATAGATCTGGAATAGATATTAACGAAGGTAACGATTTAACAAAAATTCAGTCGGGGGTACGCACGATCTGTGAAATGCTGTTATTAATTTAACACGTATGATAATTTAACATGTACATAATTTCACTGTTAAGCGATAGTGAATTTATGCCTTAGACGATGNNNNAAAAAAAAAAAAAGGAAGAAGAAAAAAAGAATAATTTAAAAAGCATTTCCCGGCTCGTTCTCGTCGAATAAATCCCGACAAAAAGAAAATCCTGTAGCAAATGCTC]

[+] EMBL BI511538             [TCCAAAGAAAAAAAAAGTATAAGTAAGTTTTTTTTATCATATACGAGATACGAAGATATAATATCGTCCCGAGAAAGGTGAAACGAAAGACATGTGAATTTAGAAATTGAATACTATTCGTAGGACTGTATGACGAGGGCACTGTAAGGCGCAGAGTAGCCGTCGATAGATCTGGAATAGATATTAACGAAGGTAACGATTTAACAAAAATTCAGTCGGGGGTACGCACGATCTGTGAAATGCTGTTATTAATTTAACACGTATGATAATTTAACATGTACATAATTTCACTGTTAAGCGATAGTGAATTTATGCCTTAGACGATGCNNNAAAAAAAAAAAAAAGAAGAAGAAAAAAAGAATAATTTAAAAAGCATTTCCCGGCTCGTTCTCGTCGAATAAATCCCGACAAAAAGAAAATCCTGTAGCAAATGCTC]
[+] EMBL BI511480             [TCCAAAGAAAAAAAAAGTATAAGTAAGTTTTTTTTATCATATACGAGATACGAAGATATAATATCGTCCCGAGAAAGGTGAAACGAAAGACATGTGAATTTAGAAATTGAATACTATTCGTAGGACTGTATGACGAGGGCACTGTAAGGCGCAGAGTAGCCGTCGATAGATCTGGAATAGATATTAACGAAGGTAACGATTTAACAAAAATTCAGTCGGGGGTACGCACGATCTGTGAAATGCTGTTATTAATTTAACACGTATGATAATTTAACATGTACATAATTTCACTGTTAAGCGATAGTGAATTTATGCCTTAGACGATGNNNNAAAAAAAAAAAAAGGAAGAAGAAAAAAAGAATAATTTAAAAAGCATTTCCCGGCTCGTTCTCGTCGAATAAATCCCGACAAAAAGAAAATCCTGT           ]


>consensus_271#1 TCCAAAGAAAAAAAAAGTATAAGTAAGTTTTTTTTATCATATACGAGATACGAAGATATA ATATCGTCCCGAGAAAGGTGAAACGAAAGACATGTGAATTTAGAAATTGAATACTATTCG TAGGACTGTATGACGAGGGCACTGTAAGGCGCAGAGTAGCCGTCGATAGATCTGGAATAG ATATTAACGAAGGTAACGATTTAACAAAAATTCAGTCGGGGGTACGCACGATCTGTGAAA TGCTGTTATTAATTTAACACGTATGATAATTTAACATGTACATAATTTCACTGTTAAGCG ATAGTGAATTTATGCCTTAGACGATGNNNNAAAAAAAAAAAAAGGAAGAAGAAAAAAAGA ATAATTTAAAAAGCATTTCCCGGCTCGTTCTCGTCGAATAAATCCCGACAAAAAGAAAAT CCTGTAGCAAATGCTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_271#0      GTCCGAGTCATCGACGGGCTCGAGTATACCAAAGTTAA-ATCTCTCCACCGCTCTGATGA 59
consensus_271#1      -TCCAAAGAAAAAAAAAGTATAAGTAAGTTTTTTTTATCATATACGAGATACGAAGATAT 59
                      *** *   *   *   *    ****        ***  ** *        *   ***  

consensus_271#0      GCCA--GCCACCACCGAATTTCGGTGTCTCTCAAGTGTCTCCCGTC-TCGATGTCCGCT- 115
consensus_271#1      AATATCGTCCCGAGAAAGGTGAAACGAAAGACATGTGAATTTAGAAATTGAATACTATTC 119
                        *  * * * *   *  *     *     ** ***  *   *   * **   *   * 

consensus_271#0      -TTGGTGTCAGCGGTCAGGTCACCAGCAGGTGGACAATTGCCACCTTCGGCCGGAGCACC 174
consensus_271#1      GTAGGACTGTATGACGAGGGCACTGTAAGGCGCAGAGTAGCCGTCGATAGATCTGGAATA 179
                      * **  *    *   *** ***    *** * * * * ***  *    *     * *  

consensus_271#0      TATGCCACCCAT--TCCTAACATGTCCAACAT---GTCAGGGATGCCTCCGTTGCCGAAT 229
consensus_271#1      GATATTAACGAAGGTAACGATTTAACAAAAATTCAGTCGGGGGTACGCACGATCTGTGAA 239
                      **   * * *   *    *  *  * ** **   *** *** * *   ** *     * 

consensus_271#0      ATGCCTGGTAGCATGCCCACCATGCCTACCATGCCCAGCATGGCGGGGCCCATCAGACGA 289
consensus_271#1      ATGC-TGTTATTA-ATTTAACACGTATGATA-ATTTAACATGTACA---TAATTTCACTG 293
                     **** ** **  *     * ** *  *   *     * ****         **   **  

consensus_271#0      CGTATCAGTGATAAATCCGCGCTTTCCTTGGCAGGAGGACTGTATGACGAGGGCACTGTA 349
consensus_271#1      TTAAGCGATAGTGAATTTATGCCTTAGACGATGNNNNAAAAAAAAAAAAAGGAAGAAGAA 353
                        * *  *  * ***    ** **    *        *    *  *  ***     * *

consensus_271#0      AGGCGCAGNGTAGCCGTCGATAGATCTGGAATAGATATTAACGAAGAAATTCAACGAAAT 409
consensus_271#1      AAAAAGAATAATTTAAAAAGCATTTCCCGGCTCGTTCTCGTCGAATAAATCCCGACAAAA 413
                     *     *              *  **  *  * * * *   **** **** *    *** 

consensus_271#0      AGGGAATTTTACAA-GAACGCCGACGTCAGACCGCCGTTTACAT 452
consensus_271#1      AGAAAATCCTGTAGCAAATGCTC--------------------- 436
                     **  ***  *  *   ** **                       




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)