These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_271#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 452 fasta sequence [GTCCGAGTCATCGACGGGCTCGAGTATACCAAAGTTAAATCTCTCCACCGCTCTGATGAGCCAGCCACCACCGAATTTCGGTGTCTCTCAAGTGTCTCCCGTCTCGATGTCCGCTTTGGTGTCAGCGGTCAGGTCACCAGCAGGTGGACAATTGCCACCTTCGGCCGGAGCACCTATGCCACCCATTCCTAACATGTCCAACATGTCAGGGATGCCTCCGTTGCCGAATATGCCTGGTAGCATGCCCACCATGCCTACCATGCCCAGCATGGCGGGGCCCATCAGACGACGTATCAGTGATAAATCCGCGCTTTCCTTGGCAGGAGGACTGTATGACGAGGGCACTGTAAGGCGCAGNGTAGCCGTCGATAGATCTGGAATAGATATTAACGAAGAAATTCAACGAAATAGGGAATTTTACAAGAACGCCGACGTCAGACCGCCGTTTACAT] [+] EMBL BI512242 [GTCCGAGTCATCGACGGGCTCGAGTATACCAAAGTTAAATCTCTCCACCGCTCTGATGAGCCAGCCACCACCGAATTTCGGTGTCTCTCAAGTGTCTCCCGTCTCGATGTCCGCTTTGGTGTCAGCGGTCAGGTCACCAGCAGGTGGACAATTGCCACCTTCGGCCGGAGCACCTATGCCACCCATTCCTAACATGTCCAACATGTCAGGGATGCCTCCGTTGCCGAATATGCCTGGTAGCATGCCCACCATGCCTACCATGCCCAGCATGGCGGGGCCCATCAGACGACGTATCAGTGATAAATCCGCGCTTTCCTTGGCAGGAGGACTGTATGACGAGGGCACTGTAAGGCGCAGAGTAGCCGTCGATAGATCTGGAATAGATATTAACGAAGAAATTCAACGAAATAGGGAATTTTACAAGAACGCCGACGTCAGACCGCCGTTTACAT] [+] EMBL BI512349 [GTCCGAGTCATCGACGGGCTCGAGTATACCAAAGTTAAATCTCTCCACCGCTCTGATGAGCCAGCCACCACCGAATTTCGGTGTCTCTCAAGTGTCTCCCGTCTCGATGTCCGCTTTGGTGTCAGCGGTCAGGTCACCAGCAGGTGGACAATTGCCACCTTCGGCCGGAGCACCTATGCCACCCATTCCTAACATGTCCAACATGTCAGGGATGCCTCCGTTGCCGAATATGCCTGGTAGCATGCCCACCATGCCTACCATGCCCAGCATGGCGGGGCCCATCAGACGACGTATCAGTGATAAATCCGCGCTTTCCTTGGCAGGAGGACTGTATGACGAGGGCACTGTAAGGCGCAGNGTAGCCGTCGATAGATCTGGAATAGATATTAACGAAGAAATTCAACGAAATAGGGAATTTTACAAGAACGCCGACGTCAGACCGCCGTTTAC ] [+] EMBL BI516664 [GTCCGAGTCATCGACGGGCTCGAGTATACCAAAGTTAAATCTCTCCACCGCTCTGATGAGCCAGCCACCACCGAATTTCGGTGTCTCTCAAGTGTCTCCCGTCTCGATGTCCGCTTTGGTGTCAGCGGTCAGGTCACCATCAGGTGGACAATTGCCACCTTCGGCCGGAGCACCTATGCCACCCATTCCTAACATGTCCAACATGTCAGGGATGCCTCCGTTGCCGAATATGCCTGGTAGCATGCCCACCATGCCTACCATGCCCATCATGGCGGGGCCCATCAGACGACGTATCAGTGATAAATCCGCGCTTTCCTTGGCAGGAGGACTGTATGACG ] consensusID : consensus_271#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 436 fasta sequence [TCCAAAGAAAAAAAAAGTATAAGTAAGTTTTTTTTATCATATACGAGATACGAAGATATAATATCGTCCCGAGAAAGGTGAAACGAAAGACATGTGAATTTAGAAATTGAATACTATTCGTAGGACTGTATGACGAGGGCACTGTAAGGCGCAGAGTAGCCGTCGATAGATCTGGAATAGATATTAACGAAGGTAACGATTTAACAAAAATTCAGTCGGGGGTACGCACGATCTGTGAAATGCTGTTATTAATTTAACACGTATGATAATTTAACATGTACATAATTTCACTGTTAAGCGATAGTGAATTTATGCCTTAGACGATGNNNNAAAAAAAAAAAAAGGAAGAAGAAAAAAAGAATAATTTAAAAAGCATTTCCCGGCTCGTTCTCGTCGAATAAATCCCGACAAAAAGAAAATCCTGTAGCAAATGCTC] [+] EMBL BI511538 [TCCAAAGAAAAAAAAAGTATAAGTAAGTTTTTTTTATCATATACGAGATACGAAGATATAATATCGTCCCGAGAAAGGTGAAACGAAAGACATGTGAATTTAGAAATTGAATACTATTCGTAGGACTGTATGACGAGGGCACTGTAAGGCGCAGAGTAGCCGTCGATAGATCTGGAATAGATATTAACGAAGGTAACGATTTAACAAAAATTCAGTCGGGGGTACGCACGATCTGTGAAATGCTGTTATTAATTTAACACGTATGATAATTTAACATGTACATAATTTCACTGTTAAGCGATAGTGAATTTATGCCTTAGACGATGCNNNAAAAAAAAAAAAAAGAAGAAGAAAAAAAGAATAATTTAAAAAGCATTTCCCGGCTCGTTCTCGTCGAATAAATCCCGACAAAAAGAAAATCCTGTAGCAAATGCTC] [+] EMBL BI511480 [TCCAAAGAAAAAAAAAGTATAAGTAAGTTTTTTTTATCATATACGAGATACGAAGATATAATATCGTCCCGAGAAAGGTGAAACGAAAGACATGTGAATTTAGAAATTGAATACTATTCGTAGGACTGTATGACGAGGGCACTGTAAGGCGCAGAGTAGCCGTCGATAGATCTGGAATAGATATTAACGAAGGTAACGATTTAACAAAAATTCAGTCGGGGGTACGCACGATCTGTGAAATGCTGTTATTAATTTAACACGTATGATAATTTAACATGTACATAATTTCACTGTTAAGCGATAGTGAATTTATGCCTTAGACGATGNNNNAAAAAAAAAAAAAGGAAGAAGAAAAAAAGAATAATTTAAAAAGCATTTCCCGGCTCGTTCTCGTCGAATAAATCCCGACAAAAAGAAAATCCTGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_271#0 GTCCGAGTCATCGACGGGCTCGAGTATACCAAAGTTAA-ATCTCTCCACCGCTCTGATGA 59 consensus_271#1 -TCCAAAGAAAAAAAAAGTATAAGTAAGTTTTTTTTATCATATACGAGATACGAAGATAT 59 *** * * * * **** *** ** * * *** consensus_271#0 GCCA--GCCACCACCGAATTTCGGTGTCTCTCAAGTGTCTCCCGTC-TCGATGTCCGCT- 115 consensus_271#1 AATATCGTCCCGAGAAAGGTGAAACGAAAGACATGTGAATTTAGAAATTGAATACTATTC 119 * * * * * * * * ** *** * * * ** * * consensus_271#0 -TTGGTGTCAGCGGTCAGGTCACCAGCAGGTGGACAATTGCCACCTTCGGCCGGAGCACC 174 consensus_271#1 GTAGGACTGTATGACGAGGGCACTGTAAGGCGCAGAGTAGCCGTCGATAGATCTGGAATA 179 * ** * * *** *** *** * * * * *** * * * * consensus_271#0 TATGCCACCCAT--TCCTAACATGTCCAACAT---GTCAGGGATGCCTCCGTTGCCGAAT 229 consensus_271#1 GATATTAACGAAGGTAACGATTTAACAAAAATTCAGTCGGGGGTACGCACGATCTGTGAA 239 ** * * * * * * * ** ** *** *** * * ** * * consensus_271#0 ATGCCTGGTAGCATGCCCACCATGCCTACCATGCCCAGCATGGCGGGGCCCATCAGACGA 289 consensus_271#1 ATGC-TGTTATTA-ATTTAACACGTATGATA-ATTTAACATGTACA---TAATTTCACTG 293 **** ** ** * * ** * * * * **** ** ** consensus_271#0 CGTATCAGTGATAAATCCGCGCTTTCCTTGGCAGGAGGACTGTATGACGAGGGCACTGTA 349 consensus_271#1 TTAAGCGATAGTGAATTTATGCCTTAGACGATGNNNNAAAAAAAAAAAAAGGAAGAAGAA 353 * * * * *** ** ** * * * * *** * * consensus_271#0 AGGCGCAGNGTAGCCGTCGATAGATCTGGAATAGATATTAACGAAGAAATTCAACGAAAT 409 consensus_271#1 AAAAAGAATAATTTAAAAAGCATTTCCCGGCTCGTTCTCGTCGAATAAATCCCGACAAAA 413 * * * ** * * * * * **** **** * *** consensus_271#0 AGGGAATTTTACAA-GAACGCCGACGTCAGACCGCCGTTTACAT 452 consensus_271#1 AGAAAATCCTGTAGCAAATGCTC--------------------- 436 ** *** * * ** ** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |