cluster # 2712

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Apis mellifera
cluster # 2712 cluster # 2712 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2712#0 length = 540 sequences # 1

consensus_2712#1 length = 536 sequences # 1

consensusID : consensus_2712#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence

                              [CCTTCCCTTTTAAATTCTTTCCAATCATTTTTGTCATATTTTTTCCCTTTTTTCCCTACTTATTTATGTACAACACATTTAACATTTTATCAGCTTTCTTTATATTTTTTTTTTCTTCTCTTCTATAACTCTCTTCCTTCTTCTCTTATTACTCTTCTTCGACTTACACCCTTCACTTTCCCGATAAACTTTTCTCATAGTCAACATGTCTCGTATAAACTATGCAGTGCCGATGCCTATCAAATAGGCAAGTACACATAAAATATATGGTAATCGACAAGTGAGTAACATTAAAATTAGAAAGTACATGTCGCAACATGGTGGACGATAGATAGAGACAGAAGAAGCATCTCGCGAACCTACACATTTTTTTCTTGCCCCGGCCTTGGACCACTCGTCTTTTTGTCTCTTTTTCTTCGTCGTAATCGTTGCAAACAATGCTAATCCAACCGTTTCTTTCATTTCGTATTTACTTGGTTCAACGCGTGATGGCGATGAGGTANNTAAAGAAATGTCTTCCACTTTTTCACGCGACATTTT]

[+] EMBL BI502805             [CCTTCCCTTTTAAATTCTTTCCAATCATTTTTGTCATATTTTTTCCCTTTTTTCCCTACTTATTTATGTACAACACATTTAACATTTTATCAGCTTTCTTTATATTTTTTTTTTCTTCTCTTCTATAACTCTCTTCCTTCTTCTCTTATTACTCTTCTTCGACTTACACCCTTCACTTTCCCGATAAACTTTTCTCATAGTCAACATGTCTCGTATAAACTATGCAGTGCCGATGCCTATCAAATAGGCAAGTACACATAAAATATATGGTAATCGACAAGTGAGTAACATTAAAATTAGAAAGTACATGTCGCAACATGGTGGACGATAGATAGAGACAGAAGAAGCATCTCGCGAACCTACACATTTTTTTCTTGCCCCGGCCTTGGACCACTCGTCTTTTTGTCTCTTTTTCTTCGTCGTAATCGTTGCAAACAATGCTAATCCAACCGTTTCTTTCATTTCGTATTTACTTGGTTCAACGCGTGATGGCGATGAGGTANNTAAAGAAATGTCTTCCACTTTTTCACGCGACATTTT]




>consensus_2712#0
CCTTCCCTTTTAAATTCTTTCCAATCATTTTTGTCATATTTTTTCCCTTTTTTCCCTACT
TATTTATGTACAACACATTTAACATTTTATCAGCTTTCTTTATATTTTTTTTTTCTTCTC
TTCTATAACTCTCTTCCTTCTTCTCTTATTACTCTTCTTCGACTTACACCCTTCACTTTC
CCGATAAACTTTTCTCATAGTCAACATGTCTCGTATAAACTATGCAGTGCCGATGCCTAT
CAAATAGGCAAGTACACATAAAATATATGGTAATCGACAAGTGAGTAACATTAAAATTAG
AAAGTACATGTCGCAACATGGTGGACGATAGATAGAGACAGAAGAAGCATCTCGCGAACC
TACACATTTTTTTCTTGCCCCGGCCTTGGACCACTCGTCTTTTTGTCTCTTTTTCTTCGT
CGTAATCGTTGCAAACAATGCTAATCCAACCGTTTCTTTCATTTCGTATTTACTTGGTTC
AACGCGTGATGGCGATGAGGTANNTAAAGAAATGTCTTCCACTTTTTCACGCGACATTTT

consensusID : consensus_2712#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 536
fasta sequence

                              [AACAATGCTAATCCAANCGTTTCTTTCATTTCGTATTTACTTGGTTCAACGCGTGATGGCGATGAGGTAGATAAAGAAATGTCTTCCACTTTTTCACGCGACATTTTCAAACAATTTGACTATTTTTATTTATTAAATATATTTCATCTTGCTTCTTCGAATCTTTGGTAAGTTTTATATATAGGCAACAATTTTGATTTCTCGGTTAATTTTTATTTTTGATGACTTAATATCCTTACTTGCGTACAAAGTGTTTCAAAAATTAATTTCTATAAAATAATTTATCAAAATAATTAAATAATTATTTTTCTGCTGTAAAAATAATCTCACTTTCACTGGTGACTTTATGATTACAATGGATTATATTAATGATACAAATAGGATGCATTTTTAAGTCAATAAAAATTAAGTACATTGTTCATACTAATAAAAAAATTCTTAAAGTACTATCACTTTTCATTCAATTTCATGAATAAAAAAACTTAACCTAACTTTTTTGAAACACTTTGTATAACGTTAAACGTAACGAAGAAAAG]

[-] EMBL BI512286             [AACAATGCTAATCCAANCGTTTCTTTCATTTCGTATTTACTTGGTTCAACGCGTGATGGCGATGAGGTAGATAAAGAAATGTCTTCCACTTTTTCACGCGACATTTTCAAACAATTTGACTATTTTTATTTATTAAATATATTTCATCTTGCTTCTTCGAATCTTTGGTAAGTTTTATATATAGGCAACAATTTTGATTTCTCGGTTAATTTTTATTTTTGATGACTTAATATCCTTACTTGCGTACAAAGTGTTTCAAAAATTAATTTCTATAAAATAATTTATCAAAATAATTAAATAATTATTTTTCTGCTGTAAAAATAATCTCACTTTCACTGGTGACTTTATGATTACAATGGATTATATTAATGATACAAATAGGATGCATTTTTAAGTCAATAAAAATTAAGTACATTGTTCATACTAATAAAAAAATTCTTAAAGTACTATCACTTTTCATTCAATTTCATGAATAAAAAAACTTAACCTAACTTTTTTGAAACACTTTGTATAACGTTAAACGTAACGAAGAAAAG]




>consensus_2712#1
AACAATGCTAATCCAANCGTTTCTTTCATTTCGTATTTACTTGGTTCAACGCGTGATGGC
GATGAGGTAGATAAAGAAATGTCTTCCACTTTTTCACGCGACATTTTCAAACAATTTGAC
TATTTTTATTTATTAAATATATTTCATCTTGCTTCTTCGAATCTTTGGTAAGTTTTATAT
ATAGGCAACAATTTTGATTTCTCGGTTAATTTTTATTTTTGATGACTTAATATCCTTACT
TGCGTACAAAGTGTTTCAAAAATTAATTTCTATAAAATAATTTATCAAAATAATTAAATA
ATTATTTTTCTGCTGTAAAAATAATCTCACTTTCACTGGTGACTTTATGATTACAATGGA
TTATATTAATGATACAAATAGGATGCATTTTTAAGTCAATAAAAATTAAGTACATTGTTC
ATACTAATAAAAAAATTCTTAAAGTACTATCACTTTTCATTCAATTTCATGAATAAAAAA
ACTTAACCTAACTTTTTTGAAACACTTTGTATAACGTTAAACGTAACGAAGAAAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2712#0      CCTTCCCTTTTAAATTCTTTCCAATCATTTTTGTCATATTTT-TTCCCTTTTTTCCCTAC 59
consensus_2712#1      --------AACAATGCTAATCCAANCGTTTCTTTCATTTCGTATTTACTTGGTTCAACGC 52
                                 **      ***** * *** * **** *  * **  ***  ***    *

consensus_2712#0      TTATTTATGTACAACACATTTAACATTTTATCAGCTTTCTTTATATTTTTTTTTTCTTCT 119
consensus_2712#1      GTGATGGCG-ATGAGGTAGATAAAGAAATGTC--------TTCCACTTTTTCACGCGACA 103
                       *  *   * *  *   *  ***     * **        **  * *****    *  * 

consensus_2712#0      CTTCTATAACTCTCTTCCTTCTTCTCTTATTACTCTTCTTCGACTTACACCCTTCACTTT 179
consensus_2712#1      TTTTCAAACAATTTGACTATTTTTATTTATTAAATATATTTCATCTTGCTTCTTCGAATC 163
                       **  * *    *   *  * **   ******    * **  *  *     ****   * 

consensus_2712#0      CCCGATAAACTTTTCTCATAGTCAACA-------TGTCTCGTATAAACTATGCAGTGCCG 232
consensus_2712#1      TTTGGTAAGTTTTATATATAGGCAACAATTTTGATTTCTCGGTTAATTTTTAT--TTTTG 221
                         * ***  ***    **** *****       * *****  ***  * *    *   *

consensus_2712#0      ATGCCTATCAAATAGGCAAGTACACATAAAATATAT-GGTAATCGA---CAAGTGAGTAA 288
consensus_2712#1      ATGACT-TAATATCCTTACTTGCGTACAAAGTGTTTCAAAAATTAATTTCTATAAAATAA 280
                      *** ** * * **    *  * *  * *** * * *    ***  *   * *   * ***

consensus_2712#0      C--ATTAAAATTAGAAAGTACATGTCGCAACATGGTGGACGATAGATAGAGACAGAAGAA 346
consensus_2712#1      TTTATCAAAATAATTAAATAATTATTTTTCTGCTGTAAA-AATAATCTCACTTTCACTGG 339
                         ** ***** *  ** **  * *         **  *  ***     *     *    

consensus_2712#0      GCATCTCGCGAAC-CTACACATTTTTTTCTTGCCCCGGCCTTGGACCACTCGTCTTTTTG 405
consensus_2712#1      TGACTTTATGATTACAATGGATTATATTAATGATACAAATAGGATGCATTTTTAAGTCAA 399
                        *  *   **   * *   *** * **  **   *      *   ** *  *   *   

consensus_2712#0      TCTCTTTTTCTTCGTCGTAATCGTTGCAAACAATGCTAATCCAACCGTTTCTTTCATTTC 465
consensus_2712#1      TAAAAATTAAGT--ACATTGTTCATACTAATAAAAAAATTCTTAAAGTA-CTATCACTTT 456
                      *     **   *   * *  *   * * ** **    * **  *  **  ** *** ** 

consensus_2712#0      GTATTTACTTGGTTCAACGCGTGATGGCGATG-AGGTANNTAAAGAAATGTCTTCCACTT 524
consensus_2712#1      TCATTCAATTTCATGAATAAAAAAACTTAACCTAACTTTTTTGAAACACTTTGTATAACG 516
                        *** * **   * **      *     *   *  *   *  * * *  *  *  *   

consensus_2712#0      TTTCACGCGACATTTT---- 540
consensus_2712#1      TTAAACGTAACGAAGAAAAG 536
                      **  ***  **

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)