These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2713#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [AATAATGAAGTAGGATATAAATTTATCCCTAATTCTGATCGACTGTTCAAAAATCTGGATAAAACTATTGAAAATAAGGCGATTGATTCGTTTTATCCGTCCAATTATAATAATGTCACTACTAATTTTGAGACGAATGCCGGAACGCGTTATATGATTGATGAATATGATAAAAATGGTTTAAAGAAAAATGAAAGTTTTTCTATTCGAATCCAAAGTTTTTACGACAAGGATAAACGTAACGAGAAATCCACGCTTAACCAAAGAAATTATTCGCAACAAAAAATGAACGACGCTGTGTATAATCTCCTGAAAGTGTCTTCGTATACGTTATCTCATGCTCGAGAGAATAATGCAAAGGGTTATCAACCTGACAAAAATACTGATAATTTTTTTAAATTATCTTCTATAAATTATAGAAATTATCCATATTTGGAAACATTGAAATCTATTCAAAGAAATACGAAAATTCTTCCTACTACGACCGGTACTGCTACGATGGCGAATATTCCCTTGGCTACTACGGAATTACCTGTATACGCTTTAACGTTATCTTTAAAACCTTT] [+] EMBL BI505825 [AATAATGAAGTAGGATATAAATTTATCCCTAATTCTGATCGACTGTTCAAAAATCTGGATAAAACTATTGAAAATAAGGCGATTGATTCGTTTTATCCGTCCAATTATAATAATGTCACTACTAATTTTGAGACGAATGCCGGAACGCGTTATATGATTGATGAATATGATAAAAATGGTTTAAAGAAAAATGAAAGTTTTTCTATTCGAATCCAAAGTTTTTACGACAAGGATAAACGTAACGAGAAATCCACGCTTAACCAAAGAAATTATTCGCAACAAAAAATGAACGACGCTGTGTATAATCTCCTGAAAGTGTCTTCGTATACGTTATCTCATGCTCGAGAGAATAATGCAAAGGGTTATCAACCTGACAAAAATACTGATAATTTTTTTAAATTATCTTCTATAAATTATAGAAATTATCCATATTTGGAAACATTGAAATCTATTCAAAGAAATACGAAAATTCTTCCTACTACGACCGGTACTGCTACGATGGCGAATATTCCCTTGGCTACTACGGAATTACCTGTATACGCTTTAACGTTATCTTTAAAACCTTT] consensusID : consensus_2713#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [TATATAATTTTAATTTATATAATTATTAAAATGATACGTTTCGTATGGATTTGGAAAATTATTTTTCGTTGCGTGATGTTTATTCTATGTATTCAATCCGAGATATTTAATATTGTAAACTCTGTAAAGGTGAGTTTCTCCTGCTTAAACCGAACTGCTGGGTTTTATGCGGATACGGATGCTGGTTGTAAAATATATTATACCTGTGATGAATATGGGAATAAATTTACTTATCATTGCCCGGAAGAAACTGCTTTTCGACAAGATGCTTTGATATGCGATCATGCTCATCTTGTGCATTGTGAAAAACCTATTTCCTCTACTCTGAAAGAATATAATGAGAAACCGGAGGAAACCGAGGATGATGATTCTTCTTATCCAAAGGATAAGAGTCGATCTCTTTTTCCTTCTTTCCCTATGACGCGATTGATGAAAACGAATAATGAAGTAGGATATAAATTTATCCCTAATTCTGATCGACTGTTCAAAAATCTGGATAAAACTATTGAAAATAAGGCGATTGATTCGTTTTATCCGTCCAATTATAATAATG] [+] EMBL BI502804 [TATATAATTTTAATTTATATAATTATTAAAATGATACGTTTCGTATGGATTTGGAAAATTATTTTTCGTTGCGTGATGTTTATTCTATGTATTCAATCCGAGATATTTAATATTGTAAACTCTGTAAAGGTGAGTTTCTCCTGCTTAAACCGAACTGCTGGGTTTTATGCGGATACGGATGCTGGTTGTAAAATATATTATACCTGTGATGAATATGGGAATAAATTTACTTATCATTGCCCGGAAGAAACTGCTTTTCGACAAGATGCTTTGATATGCGATCATGCTCATCTTGTGCATTGTGAAAAACCTATTTCCTCTACTCTGAAAGAATATAATGAGAAACCGGAGGAAACCGAGGATGATGATTCTTCTTATCCAAAGGATAAGAGTCGATCTCTTTTTCCTTCTTTCCCTATGACGCGATTGATGAAAACGAATAATGAAGTAGGATATAAATTTATCCCTAATTCTGATCGACTGTTCAAAAATCTGGATAAAACTATTGAAAATAAGGCGATTGATTCGTTTTATCCGTCCAATTATAATAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2713#0 AATAATGAAGTAGGATATAAATTTATCCCTAATTCTGATCGACTGTTCAAAAATCTGGAT 60 consensus_2713#1 --TATATAATTTTAATTTATATA-ATTATTAAAA-TGATACGTTTCGTATGGATTTGGA- 55 ** ** * ** ** ** ** *** **** * * ** **** consensus_2713#0 AAAACTATTGAAAATAAGGCGATTGATTCGTTTTATCCGTCCAATTATAATAATGTCACT 120 consensus_2713#1 -AAATTATTTTTCGTTGCGTGAT--GTTTATTCTATGTATTCAATCCGAGATAT------ 106 *** **** * * *** ** ** *** * **** * ** consensus_2713#0 ACTAATTTTGAGACGAATGCCGGAACGCGTTATATGATTGATGAATATGATAAAAATGGT 180 consensus_2713#1 -TTAATATTGTAAACTCTGTAAAGGTGAGTTTCTC--CTGCTTAAACCGA-ACTGCTGGG 162 **** *** * ** * *** ** * ** ** * *** consensus_2713#0 TTAAAGAAAAATGAAAGTTTTTCTATTCGAATCCAAAGTTTTTACGACAAGGATAAACGT 240 consensus_2713#1 TTTTATGCGGATACGGATGCTGGTTGTAAAATATATTATACCTGTGATGAATATGGGAAT 222 ** * ** * * * * *** * * * ** * ** * consensus_2713#0 AACGAGAAATCCACGCTTAACCA-AAGAAATTA-TTCGCAACAAAAAA-TGAACGACGCT 297 consensus_2713#1 AA--ATTTACTTATCATTGCCCGGAAGAAACTGCTTTTCGACAAGATGCTTTGATATGCG 280 ** * * * ** ** ****** * ** * **** * * * ** consensus_2713#0 GTGTATAATC-TCCTGAAAGTGTCTTCGTATACGTTATCTCATGCTCGAGAGAATA--AT 354 consensus_2713#1 AT-CATGCTCATCTTGTGCATTGTGAAAAACCTATTTCCTCTACTCTGAAAGAATATAAT 339 * ** ** ** ** * * ** *** ** ****** ** consensus_2713#0 GCAAAGGGTTATCAACCTGACAAAAATACTGATAATTTTTTTAA--ATTATCTTCTATAA 412 consensus_2713#1 GAGAAACCGGAGGAAACCGAGGATGATGATTCTTCTTATCCAAAGGATAAGAGTCGATCT 399 * ** * ** * ** * ** * * ** * ** ** * ** ** consensus_2713#0 ATTATAGAAATTATCCATATT-TGGAAACATTGAAATCTATTCA--AAGAAATACGAAAA 469 consensus_2713#1 CTTTTTCCTTCTTTCCCTATGACGCGATTGATGAAAACGAATAATGAAGTAGGATATAAA 459 ** * * *** *** * * ***** * * * * *** * * *** consensus_2713#0 TTCTTCCT--ACTACGACCGGTACTGCTACGATGGCGAATATTCCCTTGGCTACTACGGA 527 consensus_2713#1 TTTATCCCTAATTCTGATCGACTGTTCAAAAATCTGGATAAAACTATTGAAAATAAGGCG 519 ** *** * * ** ** * * * ** ** * * *** * * * consensus_2713#0 ATTACCTGTATACGCTTTAACGTTATCTTTAAAACCTTT 566 consensus_2713#1 ATTG-----ATTCGTTTTATCCGTCCAATTATAATAATG 553 *** ** ** **** * * *** ** * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |