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Apis mellifera
cluster # 2733 cluster # 2733       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2733#0 length = 469 sequences # 1  
 consensus_2733#1 length = 263 sequences # 1  
consensusID : consensus_2733#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 469
fasta sequence 
                              [AGACAATCCAATGGGCCCGTGCATGGGTTGGTTGGTTGGTTTCCACGTGCCCATCCGCTTGCTCGCTTCCTACGATTTCTTCATCCACCGTTTTCCGCGAAAAGCGCGCGTAACTTAACGAGCAATTGTTCTCCTTCTAGTTCCTCGCTTTTCGCGATTAATCGAAAGTTTCCAATTGCCGCGCCACTACCGTCGTGTTGTATCTGCCTGCCTGTTGGTTGGTTGGCGCGTTCGTTAAGAGACCGGCCAACGTATTGCGTGCGTGTGTGTGCGCGTGTGGTGTGTGTGTGTGTTTACTTTGCTCGATCGTTCATTAAAATTCGAGCCGATGCGCGTGTTATTTCTTCCCGTCACGGTGTTGTATTGGACTTTGGAGAGAGCTTTTACGAGGAACGGAGCGTGTGCGTGTGCGTATGTTTACATGTGCGCGCCGCGTGTCTACCTTTTGCGAAACGCGCCGCGTGTCGCC]

[+] EMBL BI504508             [AGACAATCCAATGGGCCCGTGCATGGGTTGGTTGGTTGGTTTCCACGTGCCCATCCGCTTGCTCGCTTCCTACGATTTCTTCATCCACCGTTTTCCGCGAAAAGCGCGCGTAACTTAACGAGCAATTGTTCTCCTTCTAGTTCCTCGCTTTTCGCGATTAATCGAAAGTTTCCAATTGCCGCGCCACTACCGTCGTGTTGTATCTGCCTGCCTGTTGGTTGGTTGGCGCGTTCGTTAAGAGACCGGCCAACGTATTGCGTGCGTGTGTGTGCGCGTGTGGTGTGTGTGTGTGTTTACTTTGCTCGATCGTTCATTAAAATTCGAGCCGATGCGCGTGTTATTTCTTCCCGTCACGGTGTTGTATTGGACTTTGGAGAGAGCTTTTACGAGGAACGGAGCGTGTGCGTGTGCGTATGTTTACATGTGCGCGCCGCGTGTCTACCTTTTGCGAAACGCGCCGCGTGTCGCC]




>consensus_2733#0
AGACAATCCAATGGGCCCGTGCATGGGTTGGTTGGTTGGTTTCCACGTGCCCATCCGCTT
GCTCGCTTCCTACGATTTCTTCATCCACCGTTTTCCGCGAAAAGCGCGCGTAACTTAACG
AGCAATTGTTCTCCTTCTAGTTCCTCGCTTTTCGCGATTAATCGAAAGTTTCCAATTGCC
GCGCCACTACCGTCGTGTTGTATCTGCCTGCCTGTTGGTTGGTTGGCGCGTTCGTTAAGA
GACCGGCCAACGTATTGCGTGCGTGTGTGTGCGCGTGTGGTGTGTGTGTGTGTTTACTTT
GCTCGATCGTTCATTAAAATTCGAGCCGATGCGCGTGTTATTTCTTCCCGTCACGGTGTT
GTATTGGACTTTGGAGAGAGCTTTTACGAGGAACGGAGCGTGTGCGTGTGCGTATGTTTA
CATGTGCGCGCCGCGTGTCTACCTTTTGCGAAACGCGCCGCGTGTCGCC

consensusID : consensus_2733#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 263
fasta sequence 
                              [CATGTGCGCGCCGCGTGTCTACCTTTTGCGAAACGCGCCGCGTGTCGCCTTGTTTATCCATCGCCGCCATCGCCGTCGTCGACGCTCTTGTGGCGCGGCGTTGACGATATATATCCTTTTCCTCGGTTCTCGAAAAACGACCTTACCTTACCTTAGAAATTCTTCGTTTTTTCAGGGGTGAAGCTAGCTAGCTACTAATCGACTAAAACTACTCTCTATTGTGGGATGGGAGAGAGGGAGGAGAGAGAGAGAAAAAAAAAAAA]

[+] EMBL BI502766             [CATGTGCGCGCCGCGTGTCTACCTTTTGCGAAACGCGCCGCGTGTCGCCTTGTTTATCCATCGCCGCCATCGCCGTCGTCGACGCTCTTGTGGCGCGGCGTTGACGATATATATCCTTTTCCTCGGTTCTCGAAAAACGACCTTACCTTACCTTAGAAATTCTTCGTTTTTTCAGGGGTGAAGCTAGCTAGCTACTAATCGACTAAAACTACTCTCTATTGTGGGATGGGAGAGAGGGAGGAGAGAGAGAGAAAAAAAAAAAA]




>consensus_2733#1
CATGTGCGCGCCGCGTGTCTACCTTTTGCGAAACGCGCCGCGTGTCGCCTTGTTTATCCA
TCGCCGCCATCGCCGTCGTCGACGCTCTTGTGGCGCGGCGTTGACGATATATATCCTTTT
CCTCGGTTCTCGAAAAACGACCTTACCTTACCTTAGAAATTCTTCGTTTTTTCAGGGGTG
AAGCTAGCTAGCTACTAATCGACTAAAACTACTCTCTATTGTGGGATGGGAGAGAGGGAG
GAGAGAGAGAGAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2733#0      AGACAATCCAATGGGCCCGTGCATGGGTTGGTTGGTTGGTTTCCACGTGCCCATCCGCTT 60
consensus_2733#1      -----------------CATGTGCGCGCCGCGTGTCTACCTTTTGCGAAACGCGCCGCGT 43
                                       * **   * *  *  **  *   **   **   *   **** *

consensus_2733#0      GCTCGCTTCCTA--CGATTTCTTCATCCACCGTTTTCCGCGAAAAGCGCGCGTAAC-TTA 117
consensus_2733#1      GTCGCCTTGTTTATCCATCGCCGCCATCGCCGTCGTCGACGCTCTTGTGGCGCGGCGTTG 103
                      *    ***  *   * **  *  *   * ****  **  **        ***   * ** 

consensus_2733#0      ACGAGCAATTGTTCTCCTTCTAGTTCCTCGCTTTTCGCGATTAATCGAAAGTTTCCAATT 177
consensus_2733#1      ACGA-TATATATCCTTTTCCTCGGTTCTCGAAAAACGACCTTACCTTA--CCTTAGAAAT 160
                      ****  *  * * **  * ** * * ****     **   ***    *    **  ** *

consensus_2733#0      GCCGCGCCACTACCGTCGTGTTG-TATCTGCCTGCCTGTTGGTTGGTTGGCGCGTTCGTT 236
consensus_2733#1      TCTTCGTTTTTTCAGGGGTGAAGCTAGCTAGCTACTAATCGACTAAAACTACTCTCTATT 220
                       *  **    * * *  ***  * ** **  ** *   * *  *          *   **

consensus_2733#0      AAGAGACCGGCCAACGTATTGCGTGCGTGTGTGTGCGCGTGTGGTGTGTGTGTGTGTTTA 296
consensus_2733#1      GTGGGATGGGAGAGAGGGAGGAGAGAGAGAGAAAAAAAAAAAA----------------- 263
                        * **  **  *  *    * * * * * *                             

consensus_2733#0      CTTTGCTCGATCGTTCATTAAAATTCGAGCCGATGCGCGTGTTATTTCTTCCCGTCACGG 356
consensus_2733#1      ------------------------------------------------------------
                                                                                  

consensus_2733#0      TGTTGTATTGGACTTTGGAGAGAGCTTTTACGAGGAACGGAGCGTGTGCGTGTGCGTATG 416
consensus_2733#1      ------------------------------------------------------------
                                                                                  

consensus_2733#0      TTTACATGTGCGCGCCGCGTGTCTACCTTTTGCGAAACGCGCCGCGTGTCGCC 469
consensus_2733#1      -----------------------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)