cluster # 2781

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Apis mellifera
cluster # 2781 cluster # 2781 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2781#0 length = 254 sequences # 1

consensus_2781#1 length = 243 sequences # 1

consensusID : consensus_2781#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 254
fasta sequence

                              [ACAGNANANAAAAAGTGTTCATCAAGTAATCGTATTATACATGCTAAAGATCATGCATCTATTCAATTAAGTATTGCTGATGTTGATCCTGAAACTGGACGCATGAGTGATTCACAAAAAATGTATGCAATTTGNGGAGCTATACGCCGAATGGGTGAATCTTGATGATAAGTANNGGAAGACCTGCANAAAATGATGGTANATTACCAATTTTTNTTTAATATATAATTCTTTTATTCTTTCANTAAAAATAT]

[+] EMBL BG101610             [ACAGNANANAAAAAGTGTTCATCAAGTAATCGTATTATACATGCTAAAGATCATGCATCTATTCAATTAAGTATTGCTGATGTTGATCCTGAAACTGGACGCATGAGTGATTCACAAAAAATGTATGCAATTTGNGGAGCTATACGCCGAATGGGTGAATCTTGATGATAAGTANNGGAAGACCTGCANAAAATGATGGTANATTACCAATTTTTNTTTAATATATAATTCTTTTATTCTTTCANTAAAAATAT]




>consensus_2781#0
ACAGNANANAAAAAGTGTTCATCAAGTAATCGTATTATACATGCTAAAGATCATGCATCT
ATTCAATTAAGTATTGCTGATGTTGATCCTGAAACTGGACGCATGAGTGATTCACAAAAA
ATGTATGCAATTTGNGGAGCTATACGCCGAATGGGTGAATCTTGATGATAAGTANNGGAA
GACCTGCANAAAATGATGGTANATTACCAATTTTTNTTTAATATATAATTCTTTTATTCT
TTCANTAAAAATAT

consensusID : consensus_2781#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 243
fasta sequence

                              [GTNCATCANGTAATACGTATTATNCATGCTANAGATCATGCNTCNATTCAATTNAGNATTGCTGATGTTGATCCTGAAACTGGACGCATGAGTGATTCACANAAAATGTATGCANTNTGTGGAGCTATACGCCGAATGGGTGAATCTGATGATTGTTTGGNAAGACTTGCNANNNATGATGGTATATTACCAAAAAATTTTTAATATATAATTCTTTTATTCTTTCAATAAAAATATAAAAAT]

[+] EMBL BG101614             [GTNCATCANGTAATACGTATTATNCATGCTANAGATCATGCNTCNATTCAATTNAGNATTGCTGATGTTGATCCTGAAACTGGACGCATGAGTGATTCACANAAAATGTATGCANTNTGTGGAGCTATACGCCGAATGGGTGAATCTGATGATTGTTTGGNAAGACTTGCNANNNATGATGGTATATTACCAAAAAATTTTTAATATATAATTCTTTTATTCTTTCAATAAAAATATAAAAAT]




>consensus_2781#1
GTNCATCANGTAATACGTATTATNCATGCTANAGATCATGCNTCNATTCAATTNAGNATT
GCTGATGTTGATCCTGAAACTGGACGCATGAGTGATTCACANAAAATGTATGCANTNTGT
GGAGCTATACGCCGAATGGGTGAATCTGATGATTGTTTGGNAAGACTTGCNANNNATGAT
GGTATATTACCAAAAAATTTTTAATATATAATTCTTTTATTCTTTCAATAAAAATATAAA
AAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2781#0      ACAGNANANAAAAAGTGTTCATCAAGTAAT-CGTATTATACATGCTAAAGATCATGCATC 59
consensus_2781#1      ----------------GTNCATCANGTAATACGTATTATNCATGCTANAGATCATGCNTC 44
                                      ** ***** ***** ******** ******* ********* **

consensus_2781#0      TATTCAATTAAGTATTGCTGATGTTGATCCTGAAACTGGACGCATGAGTGATTCACAAAA 119
consensus_2781#1      NATTCAATTNAGNATTGCTGATGTTGATCCTGAAACTGGACGCATGAGTGATTCACANAA 104
                       ******** ** ******************************************** **

consensus_2781#0      AATGTATGCAATTTGNGGAGCTATACGCCGAATGGGTGAATCTTGATGATAAGTANNGGA 179
consensus_2781#1      AATGTATGCANTNTGTGGAGCTATACGCCGAATGGGTGAATCT-GATGATT-GTTTGGNA 162
                      ********** * ** *************************** ******  **   * *

consensus_2781#0      AGACCTGCANAAAATGATGGTANATTACCAATTTTTNTTTAATATATAATTCTTTTATTC 239
consensus_2781#1      AGACTTGCNANNNATGATGGTATATTACCAAAAAATTTTTAATATATAATTCTTTTATTC 222
                      **** ***     ********* ********    * ***********************

consensus_2781#0      TTTCANTAAAAATAT------ 254
consensus_2781#1      TTTCAATAAAAATATAAAAAT 243
                      ***** *********

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)