Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 279 cluster # 279       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_279#0 length = 905 sequences # 3  
consensus_279#1 length = 404 sequences # 2  

consensusID : consensus_279#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 905
fasta sequence
                              [ACTAGATAGACGATATTTGTGTTTTGTGAGTGTGGACCGCGGAACAGTAACTAAAACTAATTAGATTTGTAATTGAAGGAACTGATGTTCGGCTAAGAATTATGTCGGATATTGGTGCAGGATTACGATCGGTCACACGTCAAGTCAGCTGACATATTGCGCCCTGCTACACCGCAACAGCTCTTGGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGGCAAGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAGTAATTGCAAATAGGATAAAAATAAGAACTTGTTCAATCATTGAGGTTCTATTGAGATAAACAAAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGATTTTATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAAAGAAAAACTAAAAAAGAAGCAGCAACCTCCTGTATCAGCTGCCACTGTACCAACATCACAGACCGTCTCTGGTAACGCTGGTACGTTGCAGGGCGGTTTCGGTAGTCCTGCAGCTACAGGAAATACAGCCCAACCTACCATTCCTACCATACCTCAATCAACAACAGATCTACCCAATCCCAAAGAAATAAATAGGGAGGATCAAGAAAATGAAGTAGGTGTAAGCAGTGGAGCGGTAGCAGAAGGATCTGTGAGTAGTGGGGATGCAGATGATTGCTTTGATGGCAAAGAGACTGACAAAGAATCTAAGAAGAAGAAAAATCGTTGCGCCGTGTGTCGC-AAAAAAGTTGGTTTGACGGGATTTGAATGTCGTTGTGGAGGACTGTTCTGCTCTGTGCATCGATACAGTGACAAGCACGATTGCAAATTTGATTATAGA]

[+] EMBL BI508264             [ACTAGATAGACGATATTTGTGTTTTGTGAGTGTGGACCGCGGAACAGTAACTAAAACTAATTAGATTTGTAATTGAAGGAACTGATGTTCGGCTAAGAATTATGTCGGATATTGGTGCAGGATTACGATCGGTCACACGTCAAGTCAGCTGACATATTGCGCCCTGCTACACCGCAACAGCTCTTGGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGGCAAGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAGTAATTGCAAATAGGATAAAAATAAGAACTTGTTCAATCATTGAGGTTCTATTGAGATAAATAAAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGATTTTATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAAAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BI515705             [                                                                                                                                                                                                                                                                                                                                                                        CAAAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGATTTTATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAAAGAAAATCTAAAAAAGAAGCAGCAACCTCCTGTATCAGCTGCCACTGTACCAACATCACAGACCGTCTCTGGTAACGCTGGTACGTTGCAGGGCGGTTTCGGTAGTCCTGCAGCTACAGGAAATACAGCCCAACCTACCATTCCTACCATACCTCAATCAACAACAGATCTACCCAATCCCAAAGAAATAAATAGGGAGGATCAAGAAAATGAAGTAGGTGTAAGCAGTGGAGCGGTAGCAGAAGGATCTGTGAGTAGTGGGGATGCAGATGATTGCTTTGATGGCAAAGAGACTGACAAAGAATCTAAGAAGAAGAAAAATCGTTGCGCCGTGTGTCGC AAAAAAGTTGGTTTGACGGGA                                                                              ]
[+] EMBL BI512403             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAAAAGAAGCAGCAACCTCCTGTATCAGCTGCCACTGTACCAACATCACAGACCGTCTCTGGTAACGCTGGTACGTTGCAGGGCGGTTTCGGTAGTCCTGCAGCTACAGGAAATACAGCCCAACCTACCATTCCTACCATACCTCAATCAACAACAGATCTACCCAATCCCAAAGAAATAAATAGTGAGGATCAAGAAAATGAAGTAGGTGTAAGCAGTGGAGCGGTAGCAGAAGGATCTGTGAGTAGTGGGGATGCAGATGATTGCTTTGATGGCAAAGAGACTGACAAAGAATCTAAGAAGAAGAAAAATCGTTGCGCCGTGTGTCGCAAAAAAAGTTGGTTTGACGGGATTTGAATGTCGTTGTGGAGGACTGTTCTGCTCTGTGCATCGATACAGTGACAAGCACGATTGCAAATTTGATTATAGA]


>consensus_279#0 ACTAGATAGACGATATTTGTGTTTTGTGAGTGTGGACCGCGGAACAGTAACTAAAACTAA TTAGATTTGTAATTGAAGGAACTGATGTTCGGCTAAGAATTATGTCGGATATTGGTGCAG GATTACGATCGGTCACACGTCAAGTCAGCTGACATATTGCGCCCTGCTACACCGCAACAG CTCTTGGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGG CAAGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAG TAATTGCAAATAGGATAAAAATAAGAACTTGTTCAATCATTGAGGTTCTATTGAGATAAA CAAAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGAT TTTATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAAAGAAAAACTAAAAA AGAAGCAGCAACCTCCTGTATCAGCTGCCACTGTACCAACATCACAGACCGTCTCTGGTA ACGCTGGTACGTTGCAGGGCGGTTTCGGTAGTCCTGCAGCTACAGGAAATACAGCCCAAC CTACCATTCCTACCATACCTCAATCAACAACAGATCTACCCAATCCCAAAGAAATAAATA GGGAGGATCAAGAAAATGAAGTAGGTGTAAGCAGTGGAGCGGTAGCAGAAGGATCTGTGA GTAGTGGGGATGCAGATGATTGCTTTGATGGCAAAGAGACTGACAAAGAATCTAAGAAGA AGAAAAATCGTTGCGCCGTGTGTCGCAAAAAAGTTGGTTTGACGGGATTTGAATGTCGTT GTGGAGGACTGTTCTGCTCTGTGCATCGATACAGTGACAAGCACGATTGCAAATTTGATT ATAGA



consensusID : consensus_279#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 404
fasta sequence
                              [CGTAACTGCACGTCATCTAACGTGTCTTAACACGATAAGGATAGACGAAGAACCTACTTAAATGCCTCGAACGAATTCTTACTCCATGTTGTGCGTTGGTTGCGACACGACTGCGTGTTGGAAAGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGGCAAGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAGTAATTGCAAATAGGATAAAAATAAGAACTTGTTCAATCATTGAGGTTCTATTGAGATAAATAAAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGATTTTATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAA]

[+] EMBL BI505518             [CGTAACTGCACGTCATCTAACGTGTCTTAACACGATAAGGATAGACGAAGAACCTACTTAAATGCCTCGAACGAATTCTTACTCCATGTTGTGCGTTGGTTGCGACACGACTGCGTGTTGGAAAGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGGCAAGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAGTAATTGCAAATAGGATAAAAATAAGAACTTGTTCAATCATTGAGGTTCTATTGAGATAAATAAAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGATTTTATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAA]
[+] EMBL BI515473             [                                                                 CTCGAACGAATTCTTACTCCATGTTGTGCGTTGGTTGCGACACGACTGCGTGTTGGAAAGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGGCAAGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAGTAATTGCAAATAGGATAAAAATAAGAAC                                                                                                                                          ]


>consensus_279#1 CGTAACTGCACGTCATCTAACGTGTCTTAACACGATAAGGATAGACGAAGAACCTACTTA AATGCCTCGAACGAATTCTTACTCCATGTTGTGCGTTGGTTGCGACACGACTGCGTGTTG GAAAGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGGCA AGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAGTA ATTGCAAATAGGATAAAAATAAGAACTTGTTCAATCATTGAGGTTCTATTGAGATAAATA AAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGATTT TATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_279#0      ACTAGATAGACGATATTTGTGTTTTGTGAGTGTGGACCGCGGAACAGTAACTAAAACTAA 60
consensus_279#1      ---------------------------------------------CGTAACTGCACGTCA 15
                                                                   ******  *  * *

consensus_279#0      TTAGATTTGTAATTGAAGGAACTGATGTTCGGCTAAGAATTATGTCGGATATTGGTGCAG 120
consensus_279#1      TCTAACGTGT--CTTAACACGATAAGGATAGACGAAGAACCTACTTAAATGCCTCGAACG 73
                     *   *  ***   * **     * * * * * * *****     *   **         *

consensus_279#0      GATTACGATCGGTCACACGTCAAGTCAGCTGACATATTGCGCCCTGCTACACCGCAACAG 180
consensus_279#1      AATTCTTACT--CCATGTTGTGCGTTGGTTGCGACACGACTGCGTGTTGGAA-------- 123
                      ***   *     **        **  * **  * *   *  * ** *  *         

consensus_279#0      CTCTTGGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGG 240
consensus_279#1      -----AGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGG 178
                           ******************************************************

consensus_279#0      CAAGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAG 300
consensus_279#1      CAAGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAG 238
                     ************************************************************

consensus_279#0      TAATTGCAAATAGGATAAAAATAAGAACTTGTTCAATCATTGAGGTTCTATTGAGATAAA 360
consensus_279#1      TAATTGCAAATAGGATAAAAATAAGAACTTGTTCAATCATTGAGGTTCTATTGAGATAAA 298
                     ************************************************************

consensus_279#0      CAAAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGAT 420
consensus_279#1      TAAAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGAT 358
                      ***********************************************************

consensus_279#0      TTTATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAAAGAAAAACTAAAAA 480
consensus_279#1      TTTATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAA-------------- 404
                     **********************************************              

consensus_279#0      AGAAGCAGCAACCTCCTGTATCAGCTGCCACTGTACCAACATCACAGACCGTCTCTGGTA 540
consensus_279#1      ------------------------------------------------------------
                                                                                 

consensus_279#0      ACGCTGGTACGTTGCAGGGCGGTTTCGGTAGTCCTGCAGCTACAGGAAATACAGCCCAAC 600
consensus_279#1      ------------------------------------------------------------
                                                                                 

consensus_279#0      CTACCATTCCTACCATACCTCAATCAACAACAGATCTACCCAATCCCAAAGAAATAAATA 660
consensus_279#1      ------------------------------------------------------------
                                                                                 

consensus_279#0      GGGAGGATCAAGAAAATGAAGTAGGTGTAAGCAGTGGAGCGGTAGCAGAAGGATCTGTGA 720
consensus_279#1      ------------------------------------------------------------
                                                                                 

consensus_279#0      GTAGTGGGGATGCAGATGATTGCTTTGATGGCAAAGAGACTGACAAAGAATCTAAGAAGA 780
consensus_279#1      ------------------------------------------------------------
                                                                                 

consensus_279#0      AGAAAAATCGTTGCGCCGTGTGTCGCAAAAAAGTTGGTTTGACGGGATTTGAATGTCGTT 840
consensus_279#1      ------------------------------------------------------------
                                                                                 

consensus_279#0      GTGGAGGACTGTTCTGCTCTGTGCATCGATACAGTGACAAGCACGATTGCAAATTTGATT 900
consensus_279#1      ------------------------------------------------------------
                                                                                 

consensus_279#0      ATAGA 905
consensus_279#1      -----
                          




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)