These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_279#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 905 fasta sequence [ACTAGATAGACGATATTTGTGTTTTGTGAGTGTGGACCGCGGAACAGTAACTAAAACTAATTAGATTTGTAATTGAAGGAACTGATGTTCGGCTAAGAATTATGTCGGATATTGGTGCAGGATTACGATCGGTCACACGTCAAGTCAGCTGACATATTGCGCCCTGCTACACCGCAACAGCTCTTGGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGGCAAGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAGTAATTGCAAATAGGATAAAAATAAGAACTTGTTCAATCATTGAGGTTCTATTGAGATAAACAAAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGATTTTATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAAAGAAAAACTAAAAAAGAAGCAGCAACCTCCTGTATCAGCTGCCACTGTACCAACATCACAGACCGTCTCTGGTAACGCTGGTACGTTGCAGGGCGGTTTCGGTAGTCCTGCAGCTACAGGAAATACAGCCCAACCTACCATTCCTACCATACCTCAATCAACAACAGATCTACCCAATCCCAAAGAAATAAATAGGGAGGATCAAGAAAATGAAGTAGGTGTAAGCAGTGGAGCGGTAGCAGAAGGATCTGTGAGTAGTGGGGATGCAGATGATTGCTTTGATGGCAAAGAGACTGACAAAGAATCTAAGAAGAAGAAAAATCGTTGCGCCGTGTGTCGC-AAAAAAGTTGGTTTGACGGGATTTGAATGTCGTTGTGGAGGACTGTTCTGCTCTGTGCATCGATACAGTGACAAGCACGATTGCAAATTTGATTATAGA] [+] EMBL BI508264 [ACTAGATAGACGATATTTGTGTTTTGTGAGTGTGGACCGCGGAACAGTAACTAAAACTAATTAGATTTGTAATTGAAGGAACTGATGTTCGGCTAAGAATTATGTCGGATATTGGTGCAGGATTACGATCGGTCACACGTCAAGTCAGCTGACATATTGCGCCCTGCTACACCGCAACAGCTCTTGGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGGCAAGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAGTAATTGCAAATAGGATAAAAATAAGAACTTGTTCAATCATTGAGGTTCTATTGAGATAAATAAAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGATTTTATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAAAAAAAAA ] [+] EMBL BI515705 [ CAAAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGATTTTATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAAAGAAAATCTAAAAAAGAAGCAGCAACCTCCTGTATCAGCTGCCACTGTACCAACATCACAGACCGTCTCTGGTAACGCTGGTACGTTGCAGGGCGGTTTCGGTAGTCCTGCAGCTACAGGAAATACAGCCCAACCTACCATTCCTACCATACCTCAATCAACAACAGATCTACCCAATCCCAAAGAAATAAATAGGGAGGATCAAGAAAATGAAGTAGGTGTAAGCAGTGGAGCGGTAGCAGAAGGATCTGTGAGTAGTGGGGATGCAGATGATTGCTTTGATGGCAAAGAGACTGACAAAGAATCTAAGAAGAAGAAAAATCGTTGCGCCGTGTGTCGC AAAAAAGTTGGTTTGACGGGA ] [+] EMBL BI512403 [ AAAAAGAAGCAGCAACCTCCTGTATCAGCTGCCACTGTACCAACATCACAGACCGTCTCTGGTAACGCTGGTACGTTGCAGGGCGGTTTCGGTAGTCCTGCAGCTACAGGAAATACAGCCCAACCTACCATTCCTACCATACCTCAATCAACAACAGATCTACCCAATCCCAAAGAAATAAATAGTGAGGATCAAGAAAATGAAGTAGGTGTAAGCAGTGGAGCGGTAGCAGAAGGATCTGTGAGTAGTGGGGATGCAGATGATTGCTTTGATGGCAAAGAGACTGACAAAGAATCTAAGAAGAAGAAAAATCGTTGCGCCGTGTGTCGCAAAAAAAGTTGGTTTGACGGGATTTGAATGTCGTTGTGGAGGACTGTTCTGCTCTGTGCATCGATACAGTGACAAGCACGATTGCAAATTTGATTATAGA] consensusID : consensus_279#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 404 fasta sequence [CGTAACTGCACGTCATCTAACGTGTCTTAACACGATAAGGATAGACGAAGAACCTACTTAAATGCCTCGAACGAATTCTTACTCCATGTTGTGCGTTGGTTGCGACACGACTGCGTGTTGGAAAGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGGCAAGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAGTAATTGCAAATAGGATAAAAATAAGAACTTGTTCAATCATTGAGGTTCTATTGAGATAAATAAAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGATTTTATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAA] [+] EMBL BI505518 [CGTAACTGCACGTCATCTAACGTGTCTTAACACGATAAGGATAGACGAAGAACCTACTTAAATGCCTCGAACGAATTCTTACTCCATGTTGTGCGTTGGTTGCGACACGACTGCGTGTTGGAAAGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGGCAAGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAGTAATTGCAAATAGGATAAAAATAAGAACTTGTTCAATCATTGAGGTTCTATTGAGATAAATAAAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGATTTTATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAA] [+] EMBL BI515473 [ CTCGAACGAATTCTTACTCCATGTTGTGCGTTGGTTGCGACACGACTGCGTGTTGGAAAGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGGCAAGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAGTAATTGCAAATAGGATAAAAATAAGAAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_279#0 ACTAGATAGACGATATTTGTGTTTTGTGAGTGTGGACCGCGGAACAGTAACTAAAACTAA 60 consensus_279#1 ---------------------------------------------CGTAACTGCACGTCA 15 ****** * * * consensus_279#0 TTAGATTTGTAATTGAAGGAACTGATGTTCGGCTAAGAATTATGTCGGATATTGGTGCAG 120 consensus_279#1 TCTAACGTGT--CTTAACACGATAAGGATAGACGAAGAACCTACTTAAATGCCTCGAACG 73 * * *** * ** * * * * * * ***** * ** * consensus_279#0 GATTACGATCGGTCACACGTCAAGTCAGCTGACATATTGCGCCCTGCTACACCGCAACAG 180 consensus_279#1 AATTCTTACT--CCATGTTGTGCGTTGGTTGCGACACGACTGCGTGTTGGAA-------- 123 *** * ** ** * ** * * * * ** * * consensus_279#0 CTCTTGGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGG 240 consensus_279#1 -----AGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGG 178 ****************************************************** consensus_279#0 CAAGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAG 300 consensus_279#1 CAAGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAG 238 ************************************************************ consensus_279#0 TAATTGCAAATAGGATAAAAATAAGAACTTGTTCAATCATTGAGGTTCTATTGAGATAAA 360 consensus_279#1 TAATTGCAAATAGGATAAAAATAAGAACTTGTTCAATCATTGAGGTTCTATTGAGATAAA 298 ************************************************************ consensus_279#0 CAAAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGAT 420 consensus_279#1 TAAAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGAT 358 *********************************************************** consensus_279#0 TTTATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAAAGAAAAACTAAAAA 480 consensus_279#1 TTTATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAA-------------- 404 ********************************************** consensus_279#0 AGAAGCAGCAACCTCCTGTATCAGCTGCCACTGTACCAACATCACAGACCGTCTCTGGTA 540 consensus_279#1 ------------------------------------------------------------ consensus_279#0 ACGCTGGTACGTTGCAGGGCGGTTTCGGTAGTCCTGCAGCTACAGGAAATACAGCCCAAC 600 consensus_279#1 ------------------------------------------------------------ consensus_279#0 CTACCATTCCTACCATACCTCAATCAACAACAGATCTACCCAATCCCAAAGAAATAAATA 660 consensus_279#1 ------------------------------------------------------------ consensus_279#0 GGGAGGATCAAGAAAATGAAGTAGGTGTAAGCAGTGGAGCGGTAGCAGAAGGATCTGTGA 720 consensus_279#1 ------------------------------------------------------------ consensus_279#0 GTAGTGGGGATGCAGATGATTGCTTTGATGGCAAAGAGACTGACAAAGAATCTAAGAAGA 780 consensus_279#1 ------------------------------------------------------------ consensus_279#0 AGAAAAATCGTTGCGCCGTGTGTCGCAAAAAAGTTGGTTTGACGGGATTTGAATGTCGTT 840 consensus_279#1 ------------------------------------------------------------ consensus_279#0 GTGGAGGACTGTTCTGCTCTGTGCATCGATACAGTGACAAGCACGATTGCAAATTTGATT 900 consensus_279#1 ------------------------------------------------------------ consensus_279#0 ATAGA 905 consensus_279#1 ----- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |