cluster # 2793

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Apis mellifera
cluster # 2793 cluster # 2793 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2793#0 length = 524 sequences # 1

consensus_2793#1 length = 414 sequences # 1

consensusID : consensus_2793#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 524
fasta sequence

                              [GAATTTATTTATATATAAAGGATAAAGATAAAAGAAACTTAGAAAGAAAATTTTTCATACATACGTGTGTTGAAATAATTTAAAAAGATGACCACGGATATAAGAAGCAGGGGCTGGATAACATTCTACCAAATCTAAATATTCAAGTGCTGGCTCCCAACTAGGTGGATAACAAGCTTCAAATATATATGGATTATAAAGATTGCCTTCTGCTGACATTACACCATTAACACCAGTTTCTTCTATACATTTTTGAATATCTTGTAGACATTGTATATTACCATTCGCAAATACTGGAATTGTGACAGCTTGTCTTACAGCTTTAATGTGATCCCAAGATGCAACACCAGTCAATGGACCTTTCTGTTCTCGAGTTCGTCCATGCACAGTAAGTAATTGTGCACCAGCAGCTTCAAGCATTTGTGCATATTTCACAGTTTTATCAATTTCTGCAAATACTCGAAGCTTGCAAGTTACTGGTACATGAAGTTTTTTACTCAAAGTACTAACGATTTGTTGAAGTA]

[+] EMBL BI513439             [GAATTTATTTATATATAAAGGATAAAGATAAAAGAAACTTAGAAAGAAAATTTTTCATACATACGTGTGTTGAAATAATTTAAAAAGATGACCACGGATATAAGAAGCAGGGGCTGGATAACATTCTACCAAATCTAAATATTCAAGTGCTGGCTCCCAACTAGGTGGATAACAAGCTTCAAATATATATGGATTATAAAGATTGCCTTCTGCTGACATTACACCATTAACACCAGTTTCTTCTATACATTTTTGAATATCTTGTAGACATTGTATATTACCATTCGCAAATACTGGAATTGTGACAGCTTGTCTTACAGCTTTAATGTGATCCCAAGATGCAACACCAGTCAATGGACCTTTCTGTTCTCGAGTTCGTCCATGCACAGTAAGTAATTGTGCACCAGCAGCTTCAAGCATTTGTGCATATTTCACAGTTTTATCAATTTCTGCAAATACTCGAAGCTTGCAAGTTACTGGTACATGAAGTTTTTTACTCAAAGTACTAACGATTTGTTGAAGTA]




>consensus_2793#0
GAATTTATTTATATATAAAGGATAAAGATAAAAGAAACTTAGAAAGAAAATTTTTCATAC
ATACGTGTGTTGAAATAATTTAAAAAGATGACCACGGATATAAGAAGCAGGGGCTGGATA
ACATTCTACCAAATCTAAATATTCAAGTGCTGGCTCCCAACTAGGTGGATAACAAGCTTC
AAATATATATGGATTATAAAGATTGCCTTCTGCTGACATTACACCATTAACACCAGTTTC
TTCTATACATTTTTGAATATCTTGTAGACATTGTATATTACCATTCGCAAATACTGGAAT
TGTGACAGCTTGTCTTACAGCTTTAATGTGATCCCAAGATGCAACACCAGTCAATGGACC
TTTCTGTTCTCGAGTTCGTCCATGCACAGTAAGTAATTGTGCACCAGCAGCTTCAAGCAT
TTGTGCATATTTCACAGTTTTATCAATTTCTGCAAATACTCGAAGCTTGCAAGTTACTGG
TACATGAAGTTTTTTACTCAAAGTACTAACGATTTGTTGAAGTA

consensusID : consensus_2793#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 414
fasta sequence

                              [AATATTTAGATTTGGTAGAATGTTATCCAGCCCCTGCTTCTTATATCCGTGGTCATCTTTTTAAATTATTTCAACACACAAAATAAAGAAGAAAGAGAAAATTTGGCTCGAAACTCTACTATGGAATCTTTCCGAAATGTCGTTTACACTTTGAGAGATCGATATCTACCTTATCACGAAGGACGTTTAATATGGCATGAAGAAACATCTGATTATAATTTAAAATTACCTCCATGGTTGTGCCAACCATATGTACGTCATCTTCCAGAAGAGAATATACAAAAACTAGAAATCGAAAAAATCGAAAAGCAGAATGAATCAACTAAAAGAAAATTCAGAGACGAAGAAGGAAATGAAATATCACGAAAACATTTGAAAAAACTTAAACGTATAGCGCGCCGACCAAACAAATCA]

[+] EMBL BI511290             [AATATTTAGATTTGGTAGAATGTTATCCAGCCCCTGCTTCTTATATCCGTGGTCATCTTTTTAAATTATTTCAACACACAAAATAAAGAAGAAAGAGAAAATTTGGCTCGAAACTCTACTATGGAATCTTTCCGAAATGTCGTTTACACTTTGAGAGATCGATATCTACCTTATCACGAAGGACGTTTAATATGGCATGAAGAAACATCTGATTATAATTTAAAATTACCTCCATGGTTGTGCCAACCATATGTACGTCATCTTCCAGAAGAGAATATACAAAAACTAGAAATCGAAAAAATCGAAAAGCAGAATGAATCAACTAAAAGAAAATTCAGAGACGAAGAAGGAAATGAAATATCACGAAAACATTTGAAAAAACTTAAACGTATAGCGCGCCGACCAAACAAATCA]




>consensus_2793#1
AATATTTAGATTTGGTAGAATGTTATCCAGCCCCTGCTTCTTATATCCGTGGTCATCTTT
TTAAATTATTTCAACACACAAAATAAAGAAGAAAGAGAAAATTTGGCTCGAAACTCTACT
ATGGAATCTTTCCGAAATGTCGTTTACACTTTGAGAGATCGATATCTACCTTATCACGAA
GGACGTTTAATATGGCATGAAGAAACATCTGATTATAATTTAAAATTACCTCCATGGTTG
TGCCAACCATATGTACGTCATCTTCCAGAAGAGAATATACAAAAACTAGAAATCGAAAAA
ATCGAAAAGCAGAATGAATCAACTAAAAGAAAATTCAGAGACGAAGAAGGAAATGAAATA
TCACGAAAACATTTGAAAAAACTTAAACGTATAGCGCGCCGACCAAACAAATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2793#0      GAATTTATTTATATATAAAGGATAAAGATAAAAGAAACTTAGAAAGAAAATTTTTCATAC 60
consensus_2793#1      ----------------AATATTTAGATTTGGTAGAATGTTATCCAGCCCCTGCTTCTTAT 44
                                      **    ** *  *   ****  ***   **    *  *** ** 

consensus_2793#0      ATACGTG------TGTTGAAATAATTTAAAAAGATGACCACGGATATAAGAAGCAGG--- 111
consensus_2793#1      ATCCGTGGTCATCTTTTTAAATTATTTCAACACACAAAATAAAGAAGAAAGAGAAAATTT 104
                      ** ****      * ** **** **** ** * *  *        * **  ** *     

consensus_2793#0      GGCTGGATAACATTCTACCAAATCTAAATATTCAAGTGCTGGCTCCCAACTAGGTGGATA 171
consensus_2793#1      GGCTCGAAACTCTACTATGGAATCT---TTCCGAAATGTCGTTTACACTTTGAGAGATCG 161
                      **** ** *   * ***   *****   *    ** **  *  * *    *  * *    

consensus_2793#0      ACAAGCTTCAAATATATATGGATTATAAAGATTGCCTTCTGCTGACATTACACCATTAAC 231
consensus_2793#1      ATATCTACCTTATCACGAAGGACGTTTAATATGGCATGAAGA-AACATCTGATTATAATT 220
                      * *     *  **    * ***   * ** ** ** *   *   ****   *  ** *  

consensus_2793#0      ACCAGTTTCTTCTATACATTTTTGAATATCTTGTAG---ACATTGTATATTACCATTCGC 288
consensus_2793#1      TAAAATTACCTCCATGGTTGTGCCAACCATATGTACGTCATCTTCCAGAAGAGAATATAC 280
                         * ** * ** **   * *   **     ****    *  **  * *  *  **   *

consensus_2793#0      AAATACTGGAATTGTGACAGCTTGTCTTACAGCTTTAAT--GTGATCCCAAGATGCAACA 346
consensus_2793#1      AAAAACTAGAAATCGAAAAAATCGAAAAGCAGAATGAATCAACTAAAAGAAAATTCAGAG 340
                      *** *** *** *   * *  * *     ***  * ***     *    ** ** **   

consensus_2793#0      CCAGTCAATGGACCTTTCTGTTCTCGAGTTCGTCCATGCACAGTAAGTA-ATTGTGCACC 405
consensus_2793#1      ACGAAGAAGGAAATGAAATATCACGAAAACATTTGAAAAAACTTAAACGTATAGCGCGCC 400
                       *    ** * *      * *     *     *  *   *   ***    ** * ** **

consensus_2793#0      AGCAGCTTCAAGCATTTGTGCATATTTCACAGTTTTATCAATTTCTGCAAATACTCGAAG 465
consensus_2793#1      GACCAAACAAATCA---------------------------------------------- 414
                        *      ** **                                              

consensus_2793#0      CTTGCAAGTTACTGGTACATGAAGTTTTTTACTCAAAGTACTAACGATTTGTTGAAGTA 524
consensus_2793#1      -----------------------------------------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)