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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2794#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence
[GGGGATAATGAGATGTTATATTTTGTATCACTGAGATTATCTAAAATTTCACATGTATTAAATTCTTGATCGATTTCTTTGTTGCAAAGACTGATATACATTCAAGGAAGGTTGTTATTCATCGATAATTAAATGTCTAAGATTTATCGGGATCGATGATTGAAATAATCATGGCTTCCTCCTTAGTAATTTCGCAAAGGCTCTCGCATGCTGCTAAAGCTGTGCAGTTGAGGAACATGTAACGTATTAGAGATATAAGACTGGAATAGCAGCGCTGTTTTAAGGTTACGAGAGCTTGCGAGCTTCAAAGTGGGTCAAAAGCCAGCGTGCCAGTACACTCGCCAACCTACTTGGAACGCATTCGAGCGGAGTCGCAAATATTCTTTCGCATCGTCTCCTCGCGNNNGGGAACATCAACACAACAACAGTTTTTAAATCTAAATCTTGAACGTGAAGTTGAAAAAGTTTTGATTGATAAANNCTATCGGTGATCGATAAGGAATAATTCAAAAATAAAAAAAA]
[+] EMBL BI512197 [GGGGATAATGAGATGTTATATTTTGTATCACTGAGATTATCTAAAATTTCACATGTATTAAATTCTTGATCGATTTCTTTGTTGCAAAGACTGATATACATTCAAGGAAGGTTGTTATTCATCGATAATTAAATGTCTAAGATTTATCGGGATCGATGATTGAAATAATCATGGCTTCCTCCTTAGTAATTTCGCAAAGGCTCTCGCATGCTGCTAAAGCTGTGCAGTTGAGGAACATGTAACGTATTAGAGATATAAGACTGGAATAGCAGCGCTGTTTTAAGGTTACGAGAGCTTGCGAGCTTCAAAGTGGGTCAAAAGCCAGCGTGCCAGTACACTCGCCAACCTACTTGGAACGCATTCGAGCGGAGTCGCAAATATTCTTTCGCATCGTCTCCTCGCGNNNGGGAACATCAACACAACAACAGTTTTTAAATCTAAATCTTGAACGTGAAGTTGAAAAAGTTTTGATTGATAAANNCTATCGGTGATCGATAAGGAATAATTCAAAAATAAAAAAAA]
consensusID : consensus_2794#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence
[TTAAATTCTTGATCGATTTCTTTGTTGCAAAGACTGATATACATTCAAGGAAGGCTCTCGCATGCTGCTAAAGCTGTGCAGTTGAGGAACATGTAACGTATTAGAGATATAAGACTGGAATAGCAGCGCTGTTTTAAGGTTACGAGAGCTTGCGAGCTTCAAAGTGGGTCAAAAGCCAGCGTGCCAGTACACTCGCCAACCTACTTGGAACGCATTCGAGCGGAGTCGCAAATATTCTTTCGCATCGTCTCCTCGCGACGGGGAACATCAACACAACAACAGTTTTTAAATCTAAATCTTGAACGTGAAGTTGAAAAAGTTTTGATTGATAAAGGCTATCGGTGATTGATAAGGAAAAATAAAAAAAAATTATATTTCAGAAAATATTCTCATCAAGACCATTCATTTTTGCGCTTCTCTCCTTTTTTGCATTGGATTTGTCAAAGATACTTGAA]
[+] EMBL BI517207 [TTAAATTCTTGATCGATTTCTTTGTTGCAAAGACTGATATACATTCAAGGAAGGCTCTCGCATGCTGCTAAAGCTGTGCAGTTGAGGAACATGTAACGTATTAGAGATATAAGACTGGAATAGCAGCGCTGTTTTAAGGTTACGAGAGCTTGCGAGCTTCAAAGTGGGTCAAAAGCCAGCGTGCCAGTACACTCGCCAACCTACTTGGAACGCATTCGAGCGGAGTCGCAAATATTCTTTCGCATCGTCTCCTCGCGACGGGGAACATCAACACAACAACAGTTTTTAAATCTAAATCTTGAACGTGAAGTTGAAAAAGTTTTGATTGATAAAGGCTATCGGTGATTGATAAGGAAAAATAAAAAAAAATTATATTTCAGAAAATATTCTCATCAAGACCATTCATTTTTGCGCTTCTCTCCTTTTTTGCATTGGATTTGTCAAAGATACTTGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2794#0 GGGGATAATGAGATGTTATATTTTGTATCACTGAGATTATCTAAAATTTCACATGTATTA 60
consensus_2794#1 ------------------------------------------------------------
consensus_2794#0 AATTCTTGATCGATTTCTTTGTTGCAAAGACTGATATACATTCAAGGAAGGTTGTTATTC 120
consensus_2794#1 ------------------------------------------------------------
consensus_2794#0 ATCGATAATTAAATGTCTAAGATTTATCGGGATCGATGATTGAAATAATCATGGCTTCCT 180
consensus_2794#1 ---------------------------TTAAATTCTTGATCGATTTCTTTGTTGCAAAGA 33
** **** ** * * * **
consensus_2794#0 CCTTAGTA-ATTTCGCAAAGGCTCTCGCATGCTGCTAAAGCTGTGCAGTTGAGGAACATG 239
consensus_2794#1 CTGATATACATTCAAGGAAGGCTCTCGCATGCTGCTAAAGCTGTGCAGTTGAGGAACATG 93
* ** *** *******************************************
consensus_2794#0 TAACGTATTAGAGATATAAGACTGGAATAGCAGCGCTGTTTTAAGGTTACGAGAGCTTGC 299
consensus_2794#1 TAACGTATTAGAGATATAAGACTGGAATAGCAGCGCTGTTTTAAGGTTACGAGAGCTTGC 153
************************************************************
consensus_2794#0 GAGCTTCAAAGTGGGTCAAAAGCCAGCGTGCCAGTACACTCGCCAACCTACTTGGAACGC 359
consensus_2794#1 GAGCTTCAAAGTGGGTCAAAAGCCAGCGTGCCAGTACACTCGCCAACCTACTTGGAACGC 213
************************************************************
consensus_2794#0 ATTCGAGCGGAGTCGCAAATATTCTTTCGCATCGTCTCCTCGCGNNNGGGAACATCAACA 419
consensus_2794#1 ATTCGAGCGGAGTCGCAAATATTCTTTCGCATCGTCTCCTCGCGACGGGGAACATCAACA 273
******************************************** *************
consensus_2794#0 CAACAACAGTTTTTAAATCTAAATCTTGAACGTGAAGTTGAAAAAGTTTTGATTGATAAA 479
consensus_2794#1 CAACAACAGTTTTTAAATCTAAATCTTGAACGTGAAGTTGAAAAAGTTTTGATTGATAAA 333
************************************************************
consensus_2794#0 NNCTATCGGTGATCGATAAGGAATAATTCAAAAATAAAAAAAA----------------- 522
consensus_2794#1 GGCTATCGGTGATTGATAAGGAAAAATAAAAAAAAATTATATTTCAGAAAATATTCTCAT 393
*********** ********* *** ***** * * *
consensus_2794#0 ------------------------------------------------------------
consensus_2794#1 CAAGACCATTCATTTTTGCGCTTCTCTCCTTTTTTGCATTGGATTTGTCAAAGATACTTG 453
consensus_2794#0 --
consensus_2794#1 AA 455
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |