These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2811#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence [AATTTCTTTTAAATTCCTATTTATTAGAAAATATACTTTTAGTTCAAGTATCATTACCTATATATCATATAAATAAAATTGTCGATATCTATAGGATACGATTCCACGAAAGTTTAGATTTTTGTATCCAGTGATTGTTTTACATCGAACCAACCAAAATGAGTTACGGTTATCAATTATCTCCTACAGTCGTATCATATAATGATTTTGATGCCAGAGCAGATGCAGAAATTTTAAGAAAAGCAATGAAAGGTTTTGGTACAGATGAAAAGGCTATTATTAATGTACTTGCCAATCGTAGTAATCTACAGCGCCAAGAAATTGCTNNNCAATTTAAGACTTTATATGGGAAGGATCTTATAAAAGATTTAAAGTCCGAATTATCGG] [+] EMBL BI511265 [AATTTCTTTTAAATTCCTATTTATTAGAAAATATACTTTTAGTTCAAGTATCATTACCTATATATCATATAAATAAAATTGTCGATATCTATAGGATACGATTCCACGAAAGTTTAGATTTTTGTATCCAGTGATTGTTTTACATCGAACCAACCAAAATGAGTTACGGTTATCAATTATCTCCTACAGTCGTATCATATAATGATTTTGATGCCAGAGCAGATGCAGAAATTTTAAGAAAAGCAATGAAAGGTTTTGGTACAGATGAAAAGGCTATTATTAATGTACTTGCCAATCGTAGTAATCTACAGCGCCAAGAAATTGCTNNNCAATTTAAGACTTTATATGGGAAGGATCTTATAAAAGATTTAAAGTCCGAATTATCGG] consensusID : consensus_2811#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence [TTTTTTTTTTTTAAGTTCTAAGATTTTTGTATCCAGTGATTGTTTTACATCGAACCAACCAAAATGAGTTACGGTTATCAATTATCTCCTACAGTCATATCATATAATGATTTTGATGCCAGAGCAGATGCAGAAATTTTAAGAAAAGCAATGAAAGGTTTTGGTACAGATGAAAAGGCTATTATTAATGTACTTGCCAATCGTAGTAATCTACAGCGCCAAGAAATTGCTGTTCAATTTAAGACTTTATATGGGAAGGATCTTATAAAAGATTTAAAGTCCGAATTATCGGGTAATTTCGAAAAATTAATTCTTGCTATGATGATGCCATTACCGCAATTTTATGCCAAAGAATTGCATGATGCAATGGC] [+] EMBL BI512582 [TTTTTTTTTTTTAAGTTCTAAGATTTTTGTATCCAGTGATTGTTTTACATCGAACCAACCAAAATGAGTTACGGTTATCAATTATCTCCTACAGTCATATCATATAATGATTTTGATGCCAGAGCAGATGCAGAAATTTTAAGAAAAGCAATGAAAGGTTTTGGTACAGATGAAAAGGCTATTATTAATGTACTTGCCAATCGTAGTAATCTACAGCGCCAAGAAATTGCTGTTCAATTTAAGACTTTATATGGGAAGGATCTTATAAAAGATTTAAAGTCCGAATTATCGGGTAATTTCGAAAAATTAATTCTTGCTATGATGATGCCATTACCGCAATTTTATGCCAAAGAATTGCATGATGCAATGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2811#0 AATTTCTTTTAAATTCCTATTTATTAGAAAATATACTTTTAGTTCAAGTATCATTACCTA 60 consensus_2811#1 ------------------------------------------------------------ consensus_2811#0 TATATCATATAAATAAAATTGTCGATATCTATAGGATACGATTCCACGAAAGTTTAGATT 120 consensus_2811#1 -----------------------------------TTTTTTTTTTTTAAGTTCTAAGATT 25 * ** * * ***** consensus_2811#0 TTTGTATCCAGTGATTGTTTTACATCGAACCAACCAAAATGAGTTACGGTTATCAATTAT 180 consensus_2811#1 TTTGTATCCAGTGATTGTTTTACATCGAACCAACCAAAATGAGTTACGGTTATCAATTAT 85 ************************************************************ consensus_2811#0 CTCCTACAGTCGTATCATATAATGATTTTGATGCCAGAGCAGATGCAGAAATTTTAAGAA 240 consensus_2811#1 CTCCTACAGTCATATCATATAATGATTTTGATGCCAGAGCAGATGCAGAAATTTTAAGAA 145 *********** ************************************************ consensus_2811#0 AAGCAATGAAAGGTTTTGGTACAGATGAAAAGGCTATTATTAATGTACTTGCCAATCGTA 300 consensus_2811#1 AAGCAATGAAAGGTTTTGGTACAGATGAAAAGGCTATTATTAATGTACTTGCCAATCGTA 205 ************************************************************ consensus_2811#0 GTAATCTACAGCGCCAAGAAATTGCTNNNCAATTTAAGACTTTATATGGGAAGGATCTTA 360 consensus_2811#1 GTAATCTACAGCGCCAAGAAATTGCTGTTCAATTTAAGACTTTATATGGGAAGGATCTTA 265 ************************** ******************************* consensus_2811#0 TAAAAGATTTAAAGTCCGAATTATCGG--------------------------------- 387 consensus_2811#1 TAAAAGATTTAAAGTCCGAATTATCGGGTAATTTCGAAAAATTAATTCTTGCTATGATGA 325 *************************** consensus_2811#0 ---------------------------------------------- consensus_2811#1 TGCCATTACCGCAATTTTATGCCAAAGAATTGCATGATGCAATGGC 371 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |