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These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 2811 cluster # 2811       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2811#0 length = 387 sequences # 1  
 consensus_2811#1 length = 371 sequences # 1  
consensusID : consensus_2811#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 387
fasta sequence 
                              [AATTTCTTTTAAATTCCTATTTATTAGAAAATATACTTTTAGTTCAAGTATCATTACCTATATATCATATAAATAAAATTGTCGATATCTATAGGATACGATTCCACGAAAGTTTAGATTTTTGTATCCAGTGATTGTTTTACATCGAACCAACCAAAATGAGTTACGGTTATCAATTATCTCCTACAGTCGTATCATATAATGATTTTGATGCCAGAGCAGATGCAGAAATTTTAAGAAAAGCAATGAAAGGTTTTGGTACAGATGAAAAGGCTATTATTAATGTACTTGCCAATCGTAGTAATCTACAGCGCCAAGAAATTGCTNNNCAATTTAAGACTTTATATGGGAAGGATCTTATAAAAGATTTAAAGTCCGAATTATCGG]

[+] EMBL BI511265             [AATTTCTTTTAAATTCCTATTTATTAGAAAATATACTTTTAGTTCAAGTATCATTACCTATATATCATATAAATAAAATTGTCGATATCTATAGGATACGATTCCACGAAAGTTTAGATTTTTGTATCCAGTGATTGTTTTACATCGAACCAACCAAAATGAGTTACGGTTATCAATTATCTCCTACAGTCGTATCATATAATGATTTTGATGCCAGAGCAGATGCAGAAATTTTAAGAAAAGCAATGAAAGGTTTTGGTACAGATGAAAAGGCTATTATTAATGTACTTGCCAATCGTAGTAATCTACAGCGCCAAGAAATTGCTNNNCAATTTAAGACTTTATATGGGAAGGATCTTATAAAAGATTTAAAGTCCGAATTATCGG]




>consensus_2811#0
AATTTCTTTTAAATTCCTATTTATTAGAAAATATACTTTTAGTTCAAGTATCATTACCTA
TATATCATATAAATAAAATTGTCGATATCTATAGGATACGATTCCACGAAAGTTTAGATT
TTTGTATCCAGTGATTGTTTTACATCGAACCAACCAAAATGAGTTACGGTTATCAATTAT
CTCCTACAGTCGTATCATATAATGATTTTGATGCCAGAGCAGATGCAGAAATTTTAAGAA
AAGCAATGAAAGGTTTTGGTACAGATGAAAAGGCTATTATTAATGTACTTGCCAATCGTA
GTAATCTACAGCGCCAAGAAATTGCTNNNCAATTTAAGACTTTATATGGGAAGGATCTTA
TAAAAGATTTAAAGTCCGAATTATCGG

consensusID : consensus_2811#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 371
fasta sequence 
                              [TTTTTTTTTTTTAAGTTCTAAGATTTTTGTATCCAGTGATTGTTTTACATCGAACCAACCAAAATGAGTTACGGTTATCAATTATCTCCTACAGTCATATCATATAATGATTTTGATGCCAGAGCAGATGCAGAAATTTTAAGAAAAGCAATGAAAGGTTTTGGTACAGATGAAAAGGCTATTATTAATGTACTTGCCAATCGTAGTAATCTACAGCGCCAAGAAATTGCTGTTCAATTTAAGACTTTATATGGGAAGGATCTTATAAAAGATTTAAAGTCCGAATTATCGGGTAATTTCGAAAAATTAATTCTTGCTATGATGATGCCATTACCGCAATTTTATGCCAAAGAATTGCATGATGCAATGGC]

[+] EMBL BI512582             [TTTTTTTTTTTTAAGTTCTAAGATTTTTGTATCCAGTGATTGTTTTACATCGAACCAACCAAAATGAGTTACGGTTATCAATTATCTCCTACAGTCATATCATATAATGATTTTGATGCCAGAGCAGATGCAGAAATTTTAAGAAAAGCAATGAAAGGTTTTGGTACAGATGAAAAGGCTATTATTAATGTACTTGCCAATCGTAGTAATCTACAGCGCCAAGAAATTGCTGTTCAATTTAAGACTTTATATGGGAAGGATCTTATAAAAGATTTAAAGTCCGAATTATCGGGTAATTTCGAAAAATTAATTCTTGCTATGATGATGCCATTACCGCAATTTTATGCCAAAGAATTGCATGATGCAATGGC]




>consensus_2811#1
TTTTTTTTTTTTAAGTTCTAAGATTTTTGTATCCAGTGATTGTTTTACATCGAACCAACC
AAAATGAGTTACGGTTATCAATTATCTCCTACAGTCATATCATATAATGATTTTGATGCC
AGAGCAGATGCAGAAATTTTAAGAAAAGCAATGAAAGGTTTTGGTACAGATGAAAAGGCT
ATTATTAATGTACTTGCCAATCGTAGTAATCTACAGCGCCAAGAAATTGCTGTTCAATTT
AAGACTTTATATGGGAAGGATCTTATAAAAGATTTAAAGTCCGAATTATCGGGTAATTTC
GAAAAATTAATTCTTGCTATGATGATGCCATTACCGCAATTTTATGCCAAAGAATTGCAT
GATGCAATGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2811#0      AATTTCTTTTAAATTCCTATTTATTAGAAAATATACTTTTAGTTCAAGTATCATTACCTA 60
consensus_2811#1      ------------------------------------------------------------
                                                                                  

consensus_2811#0      TATATCATATAAATAAAATTGTCGATATCTATAGGATACGATTCCACGAAAGTTTAGATT 120
consensus_2811#1      -----------------------------------TTTTTTTTTTTTAAGTTCTAAGATT 25
                                                          *    **     *    * *****

consensus_2811#0      TTTGTATCCAGTGATTGTTTTACATCGAACCAACCAAAATGAGTTACGGTTATCAATTAT 180
consensus_2811#1      TTTGTATCCAGTGATTGTTTTACATCGAACCAACCAAAATGAGTTACGGTTATCAATTAT 85
                      ************************************************************

consensus_2811#0      CTCCTACAGTCGTATCATATAATGATTTTGATGCCAGAGCAGATGCAGAAATTTTAAGAA 240
consensus_2811#1      CTCCTACAGTCATATCATATAATGATTTTGATGCCAGAGCAGATGCAGAAATTTTAAGAA 145
                      *********** ************************************************

consensus_2811#0      AAGCAATGAAAGGTTTTGGTACAGATGAAAAGGCTATTATTAATGTACTTGCCAATCGTA 300
consensus_2811#1      AAGCAATGAAAGGTTTTGGTACAGATGAAAAGGCTATTATTAATGTACTTGCCAATCGTA 205
                      ************************************************************

consensus_2811#0      GTAATCTACAGCGCCAAGAAATTGCTNNNCAATTTAAGACTTTATATGGGAAGGATCTTA 360
consensus_2811#1      GTAATCTACAGCGCCAAGAAATTGCTGTTCAATTTAAGACTTTATATGGGAAGGATCTTA 265
                      **************************   *******************************

consensus_2811#0      TAAAAGATTTAAAGTCCGAATTATCGG--------------------------------- 387
consensus_2811#1      TAAAAGATTTAAAGTCCGAATTATCGGGTAATTTCGAAAAATTAATTCTTGCTATGATGA 325
                      ***************************                                 

consensus_2811#0      ----------------------------------------------
consensus_2811#1      TGCCATTACCGCAATTTTATGCCAAAGAATTGCATGATGCAATGGC 371


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)