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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_286#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 717 fasta sequence
[TAAGAGAGATTTGTAGAGAGTTTATATTAGGCCAATTGTCACAGTGAGAGTTATAATACGATAGTGATG-TTTTTTTTTTTTCTCCTTCAAAAGAAATCGTGGCCAACTATTCCAATTCCCTTCCCTTCAAAGAAGAGAATTTCGTTCCGCTTCGCGTCTGATCCACCATGTTTTAATTAGCTCGTCTTTTATTCTCCCAGTTTCATCATCGCCAAGCTTGCGGAATCAATCGAATGTTCGAA-AATCGACGAGAAATATTGAATGGTGAAATAGCACATCCGGGTGAACGAAGCTAAAAGTGCTAAAAATTGACCTCGAACAGTTCAAATAGTTGGCCACAATTACAGGCACGAAAGATCGTGTCGCGTTCCAGCATAATACTCGCGTAACAATTGCCTGGATGATCAATTTGTGTGATACGTGGACGGTGAAAGGATCCATCGAAGGATATAATATCTCGAGTGCCGATTCCGAACGTATTCTCTCGTAATTTTCAATGATTTTTATTTCGTTCCAAGGTACCTGTTCTTGGCCAAATATAGATTAACGAAATTGTATTACTTAACGTTAAGAGGAAACATAATTTGTTCGTAGATGATTTTCTTTTATTTATAATCGAAAGTTGCATCGAGAAGCAAGTTTCGCGTTGAAAAAAATCAAAATTTATAAACTTATTTAATTGTAGGAATTGATGGATTAAAATGATAATATATTAGC]
[+] EMBL BI504811 [TAAGAGAGATTTGTAGAGAGTTTATATTAGGCCAATTGTCACAGTGAGAGTTATAATACGATAGTGATG TTTTTTTTTTTTCTCCTTCAAAAGAAATCGTGGCCAACTATTCCAATTCCCTTCCCTTCAAAGAAGAGAATTTCGTTCCGCTTCGCGTCTGATCCACCATGTTTTAATTAGCTCGTCTTTTATTCTCCCAGTTTCATCATCGCCAAGCTTGCGGAATCAATCGAATGTTCGAATAATCGACGAGAAATATTGAATGGTGAAATAGCACATCCGGGTGAACGAAGCTAAAAGTGCTAAAAATTGACCTCGAACAGTTCAAATAGTTGGCCACAATTACAGGCACGAAAGATCGTGTCGCGTTCCAGCATAATACTCGCGTAACAATTGCCTGGATGATCAATTTGTGTGATACGTGGACGGTGAAAGGATCCATCGAAGGATATAATATCTCGAGTGCCGATTCCGAACGTATTCTCTCGTAATTTTCAATGATTTTTATTTCGTTCCAAGGTACCTGTTCTTGGCCAAATATAGATTAACGAAATT ]
[+] EMBL BI508210 [ ATATTAGGCCAATTGTCACAGTGAGAGTTATAATACGATAGTGATGTTTTTTTTTTTTTCTCCTTCAAAAGAAATCGTGGCCAACTATTCCAATTCCCTTCCCTTCAAAGAAGAGAATTTCGTTCCGCTTCGCGTCTGATCCACCATGTTTTAATTAGCTCGTCTTTTATTCTCCCAGTTTCATCATCGCCAAGCTTGCGGAATCAATCGAATGTTCG AATCGACGAGAAATATTGAATGGTGAAATAGCACATCCGGGTGAACGAAGCTAAAAGTGCTAAAAATTGACCTCGAACAGTTCAAATAGTTGGCCACAATTACAGGCACGAAAGATCGTGTCGCGTTCCAGCATAATACTCGCGTAACAATTGCCTGGATGATCAATTTGTGTGATACGTGGACGNNGAAAGGATCCATCGAAGGATATAATATCTCGAGTGCCGATTCCGAACGTATTCTCTCGTAATTTTCAATGATTTTTATTTCGTTCCAAGGTACCTGTTCTTGGCCAAATA ]
[+] EMBL BI508618 [ CACAGTGAGAGTTATAATACGATAGTGATG TTTTTTTTTTTTCTCCTTCAAAAGAAATCGTGGCCAACTATTCCAATTCCCTTCCCTTCAAAGAAGAGAATTTCGTTCCGCTTCGCGTCTGATCCACCATGTTTTAATTAGCTCGTCTTTTATTCTCCCAGTTTCATCATCGCCAAGCTTGCGGAATCAATCGAATGTTCG AATCGACGAGAAATATTGAATGNNGAAATAGCACATCCGGGTGAACGAAGCTAAAAGTGCTAAAAATTGACCTCGAACAGTTCAAATAGTTGGCCACAATTACAGGCACGAAAGATCGTGTCGCGTTCCAGCATAATACTCGCGTAACAATTGCCTGGATGATCAATTT ]
[+] EMBL BI509318 [ GAGTTATAATACGATAGTGATG TTTTTTTTTTTTCTCCTTCAAAAGAAATCGTGGCCAACTATTCCAATTCCCTTCCCTTCAAAGAAGAGAATTTCGTTCCGCTTCGCGTCTGATCCACCATGTTTTAATTAGCTCGTCTTTTATTCTCCCAGTTTCATCATCGCCAAGCTTGCGGAATCAATCGAATGTTCGAATAATCGACGAGAAATATTGAATGGTGAAATAGCACATCCGGGTGAACGAAGCTAAAAGTGCTAAAAATTGACCTCGAACAGTTCAAATAGTTGGCCACAATTACAGGCACGAAAGATCGTGTCGCGTTCCAGCATAATACTCGCGTAACAATTGCCTGGATGATCAATTTGTGTGATACGTGGACGGTGAAAGGATCCATCGAAGGATATAATATCTCGAGTGCCGATTCCGAACGTATTCTCTCGTAATTTTCAATGATTTTTATTTCGTTCCAAGGTACCTGTTCTTGGCCAAATATAGATTAACGAAATTGTATTACTTAACGTTAAGAGGAAACATAATTTGTTCGTAGATGATTTTCTTTTATTTATAATCGAAAGTTGCATCGAGAAGCAAGTTTCGCGTTGAAAAAAATCAAAATTTATAAACTTATTTAATTGTAGGAATTGATGGATTAAAATGATAATATATTAGC]
consensusID : consensus_286#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence
[GCCACAATTACAGGCACGAAAGATCGTGTCGCGTTCCAGCATAATACTCGCGTAACAATTGCCTGGATGATCAATTTGTGTGATACGTGGACGGTGAAAGGATCCATCGAAGGATATAATATCTCGAGTGCCGATTCCGAACGTATTCTCTCGTAATTTTCAATGATTTTTATTTCGTTCCAAGATATTCAATATTGGCGGGAATTGGCTAATGAAGAATTGGAGGAAGCTTTATCGTACAAATGGAATACGAACAAAGCGAAGAACGTGATCGTCTTTGTAGGCGATGGCATGAGTCCTGACACCATAACCGCCAGTAGAATATACCGTGCTGGCGAGAGCAGTCGTTTGGCTTGGGAAAATTTTCCTCACATAGGCATTCTTAAGACGTACAATACTAACAAGCAAGTACCAGATTCAGCTTCAACGGCAACTGCTTTGTTTGGTGGAGTGAAAACAAATTTCGATTTGGTT]
[+] EMBL BI517233 [GCCACAATTACAGGCACGAAAGATCGTGTCGCGTTCCAGCATAATACTCGCGTAACAATTGCCTGGATGATCAATTTGTGTGATACGTGGACGGTGAAAGGATCCATCGAAGGATATAATATCTCGAGTGCCGATTCCGAACGTATTCTCTCGTAATTTTCAATGATTTTTATTTCGTTCCAAGATATTCAATATTGGCGGGAATTGGCTAATGAAGAATTGGAGGAAGCTTTATCGTACAAATGGAATACGAACAAAGCGAAGAACGTGATCGTCTTTGTAGGCGATGGCATGAGTCCTGACACCATAACCGCCAGTAGAATATACCGTGCTGGCGAGAGCAGTCGTTTGGCTTGGGAAAATTTTCCTCACATAGGCATTCTTAAGACGTACAATACTAACAAGCAAGTACCAGATTCAGCTTCAACGGCAACTGCTTTGTTTGGTGGAGTGAAAACAAATTTCGATTTGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_286#0 TAAGAGAGATTTGTAGAGAGTTTATATTAGGCCAATTGTCACAGTGAGAGTTATAATACG 60
consensus_286#1 ------------------------------------------------------------
consensus_286#0 ATAGTGATGTTTTTTTTTTTTCTCCTTCAAAAGAAATCGTGGCCAACTATTCCAATTCCC 120
consensus_286#1 ------------------------------------------------------------
consensus_286#0 TTCCCTTCAAAGAAGAGAATTTCGTTCCGCTTCGCGTCTGATCCACCATGTTTTAATTAG 180
consensus_286#1 ------------------------------------------------------------
consensus_286#0 CTCGTCTTTTATTCTCCCAGTTTCATCATCGCCAAGCTTGCGGAATCAATCGAATGTTCG 240
consensus_286#1 ------------------------------------------------------------
consensus_286#0 AAAATCGACGAGAAATATTGAATGGTGAAATAGCACATCCGGGTGAACGAAGCTAAAAGT 300
consensus_286#1 ------------------------------------------------------------
consensus_286#0 GCTAAAAATTGACCTCGAACAGTTCAAATAGTTGGCCACAATTACAGGCACGAAAGATCG 360
consensus_286#1 ----------------------------------GCCACAATTACAGGCACGAAAGATCG 26
**************************
consensus_286#0 TGTCGCGTTCCAGCATAATACTCGCGTAACAATTGCCTGGATGATCAATTTGTGTGATAC 420
consensus_286#1 TGTCGCGTTCCAGCATAATACTCGCGTAACAATTGCCTGGATGATCAATTTGTGTGATAC 86
************************************************************
consensus_286#0 GTGGACGGTGAAAGGATCCATCGAAGGATATAATATCTCGAGTGCCGATTCCGAACGTAT 480
consensus_286#1 GTGGACGGTGAAAGGATCCATCGAAGGATATAATATCTCGAGTGCCGATTCCGAACGTAT 146
************************************************************
consensus_286#0 TCTCTCGTAATTTTCAATGATTTTTATTTCGTTCCAAGGTACCTGTTCTTGGCCAAATAT 540
consensus_286#1 TCTCTCGTAATTTTCAATGATTTTTATTTCGTTCCAAGATATTCAATATTGGCGGGA-AT 205
************************************** ** * ***** * **
consensus_286#0 AGATTAACGAA--ATTGTATTA---CTTAACGTTAAGAGGAAACATAATTTGTTCGTAGA 595
consensus_286#1 TGGCTAATGAAGAATTGGAGGAAGCTTTATCGTACAAATGGAATACGAACAAAGCGAAGA 265
* *** *** **** * * *** *** * * * ** * * ** ***
consensus_286#0 ---TGATTTTCTTT-TATTTATAATCGAAAGTT---GCATCG--------AGAAGCAAGT 640
consensus_286#1 ACGTGATCGTCTTTGTAGGCGATGGCATGAGTCCTGACACCATAACCGCCAGTAGAATAT 325
**** ***** ** * *** ** * ** ** * *
consensus_286#0 TTCGCGTTGAAAAAAATCAAAATTTAT------AAACTTATTTAATTGTAGGAATTGATG 694
consensus_286#1 ACCGTGCTGGCGAGAGCAGTCGTTTGGCTTGGGAAAATTTTCCTCACATAGGCATTCTTA 385
** * ** * * *** *** ** * **** *** *
consensus_286#0 GAT--TAAAATGATAATATATTAGC----------------------------------- 717
consensus_286#1 AGACGTACAATACTAACAAGCAAGTACCAGATTCAGCTTCAACGGCAACTGCTTTGTTTG 445
** *** *** * **
consensus_286#0 -----------------------------
consensus_286#1 GTGGAGTGAAAACAAATTTCGATTTGGTT 474
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |