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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2920#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence
[CTATTACACAATTTCAATTAAATGAAAGATTATTTCATTGTAAAAGACAAAGTATTCTCACAGTTATACCTCAGGGCACACGAGTCAAGCAGGTGCGTCAGTATGGCCATAAGGCACCATTATCACTTGACCTTATTCGCCAGCGTGTACTTTTAGTACTCAATCTCTATGATAAAGTTGATGTTCAGAAGTTATCTTTGAACTCTCATTTTATGCAAGATCTGGGTTTGGATTCTTTGGATCATGTAGAAATTATAATGGCTATAGAAGATGAATTTGGTTTTGAAATACCAGATATGGATGCACAGAAGCTTCTACGACCTGCGGATATAGTACGTTACGTTGCCGATAGAGAAGATGTTTACGAATAAATATTCATATAATATAAATCATCTCATTAGTCAAGCTTTTTTATTTTTAAAACATTATTAAAAAAAATAATAAATTTTATTTCTTCTGTATATAATATAAATTGTA]
[+] EMBL BI508135 [CTATTACACAATTTCAATTAAATGAAAGATTATTTCATTGTAAAAGACAAAGTATTCTCACAGTTATACCTCAGGGCACACGAGTCAAGCAGGTGCGTCAGTATGGCCATAAGGCACCATTATCACTTGACCTTATTCGCCAGCGTGTACTTTTAGTACTCAATCTCTATGATAAAGTTGATGTTCAGAAGTTATCTTTGAACTCTCATTTTATGCAAGATCTGGGTTTGGATTCTTTGGATCATGTAGAAATTATAATGGCTATAGAAGATGAATTTGGTTTTGAAATACCAGATATGGATGCACAGAAGCTTCTACGACCTGCGGATATAGTACGTTACGTTGCCGATAGAGAAGATGTTTACGAATAAATATTCATATAATATAAATCATCTCATTAGTCAAGCTTTTTTATTTTTAAAACATTATTAAAAAAAATAATAAATTTTATTTCTTCTGTATATAATATAAATTGTA]
consensusID : consensus_2920#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence
[AGTTCGTATTTTAATAAGAAATACCGGTGCTTTTAGAAATTTGATCTCTCGAACGTGTTTACGAAGTGCTATTACACAATTTCAATTAAATGAAAGATTATTTCATTGTAAAAGACAAAGTATTCTCACAGTTATACCTCAGGTAAATATACAAAATATTCGTACATCCACTTCAAAACCTAAAACTCAAGAACTAGAAGAACGTGTTTTAAATGTGGTCCAAGCTTATGATAAAATAACTGCTGACAAGTTATCTTTGAACTCTCATTTTATGCAAGATCTGGGTTTGGATTCTTTGGATCATGTAGAAATTATAATGGCTATAGAAGATGAATTTGGTTTTGAAATACCAGATATGGATGCACAGAAGCTTCTACGACCTGCGGATATAGTACGTTACGTTGCCGATAGAGAAGATGTTTACG]
[+] EMBL BI510891 [AGTTCGTATTTTAATAAGAAATACCGGTGCTTTTAGAAATTTGATCTCTCGAACGTGTTTACGAAGTGCTATTACACAATTTCAATTAAATGAAAGATTATTTCATTGTAAAAGACAAAGTATTCTCACAGTTATACCTCAGGTAAATATACAAAATATTCGTACATCCACTTCAAAACCTAAAACTCAAGAACTAGAAGAACGTGTTTTAAATGTGGTCCAAGCTTATGATAAAATAACTGCTGACAAGTTATCTTTGAACTCTCATTTTATGCAAGATCTGGGTTTGGATTCTTTGGATCATGTAGAAATTATAATGGCTATAGAAGATGAATTTGGTTTTGAAATACCAGATATGGATGCACAGAAGCTTCTACGACCTGCGGATATAGTACGTTACGTTGCCGATAGAGAAGATGTTTACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2920#0 ------------------------------------------------------------
consensus_2920#1 AGTTCGTATTTTAATAAGAAATACCGGTGCTTTTAGAAATTTGATCTCTCGAACGTGTTT 60
consensus_2920#0 --------CTATTACACAATTTCAATTAAATGAAAGATTATTTCATTGTAAAAGACAAAG 52
consensus_2920#1 ACGAAGTGCTATTACACAATTTCAATTAAATGAAAGATTATTTCATTGTAAAAGACAAAG 120
****************************************************
consensus_2920#0 TATTCTCACAGTTATACCTCAGGGCACACGAGTCAAGCAGGTGCGTCAGTATGGCCATAA 112
consensus_2920#1 TATTCTCACAGTTATACCTCAGG-TAAATATACAAAATA------TTCGTACATCCACTT 173
*********************** * * ** * * *** ***
consensus_2920#0 GGCACCATTATCACTTGACCTTATTCGCCAGCGTGTACTTTTAGTACTCAATCTCTATGA 172
consensus_2920#1 CAAAAC-CTAAAACTCAAGAAC-TAGAAGAACGTGTTTTAAATGTGGTCCAAGCTTATGA 231
* * ** *** * * * ***** * ** ** * *****
consensus_2920#0 TAAAGTTGATGTTCAGAAGTTATCTTTGAACTCTCATTTTATGCAAGATCTGGGTTTGGA 232
consensus_2920#1 TAAAATAACTGCTGACAAGTTATCTTTGAACTCTCATTTTATGCAAGATCTGGGTTTGGA 291
**** * ** * * ********************************************
consensus_2920#0 TTCTTTGGATCATGTAGAAATTATAATGGCTATAGAAGATGAATTTGGTTTTGAAATACC 292
consensus_2920#1 TTCTTTGGATCATGTAGAAATTATAATGGCTATAGAAGATGAATTTGGTTTTGAAATACC 351
************************************************************
consensus_2920#0 AGATATGGATGCACAGAAGCTTCTACGACCTGCGGATATAGTACGTTACGTTGCCGATAG 352
consensus_2920#1 AGATATGGATGCACAGAAGCTTCTACGACCTGCGGATATAGTACGTTACGTTGCCGATAG 411
************************************************************
consensus_2920#0 AGAAGATGTTTACGAATAAATATTCATATAATATAAATCATCTCATTAGTCAAGCTTTTT 412
consensus_2920#1 AGAAGATGTTTACG---------------------------------------------- 425
**************
consensus_2920#0 TATTTTTAAAACATTATTAAAAAAAATAATAAATTTTATTTCTTCTGTATATAATATAAA 472
consensus_2920#1 ------------------------------------------------------------
consensus_2920#0 TTGTA 477
consensus_2920#1 -----
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |