These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_297#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1351 fasta sequence [GTGTTTGTTGTGTTGTACGAAATTTTTATTCTCTTTTTTGAAAAAAGAAACGTTCGCTTTTTTTCGGAAAGATCGTACGTTTTGAAGAGAAAATTATGTCGTCGTACATCCAAGTTGCCGAAGATGAAGGCGATGAACCGATCGAATTGCCAACGGAAGACGATAGTACACTTTTATTGACTACCGTAACCGCCCAGTTTCCCGGAACGTGTGGCCTGAAATATCGCAATCCAGAATCTCGGACGATGCGCGGCATTCGTCTTGTTGACGGACGTCTTCATCCGCCCGAAAATGGATGGGGCAAGGCAATTTACTTTTGTGTTTTTCCAAAAGAGAACAAACGTAAATCTGATGACAATTTGGAAAATTCCACAGCTAAGACTAAAAGAATGGAAACAAAGTTGCGTTGCACAGACTTGATCGTACTTGGTTTACCATGGAAAACAACCGAGCAGAACTTGCGAGAGTATTTTGAAACATTTGGAGAAGTACTCATGGCACAAGTTAAAAAAGATGCAAAATCAGGACAAAGCAAAGGATTTGGCTTTATTAGATTTGGGAGTTATGAATCCCAATTAAGATGTCTTGCTCAACGACATATGATTGATGGGCGATGGTGTGATGTTAAGGTTCCCAGGAGGAAGAATATTGATGGCTTAATGATGGCTCGTCAGTATGATACGAGCAAACACAATGAATGCTACCGTCCTATACCGGTTCATACGCCGAGTAATCGACGGGTACCTGTGGCGAAACCTTATATCAACTTAAATACATCTGAAGCTGCTAATACACCTAGATACGATTCGGAGTATGATTATAAAACCACGCATTATCCGTCGTACCCTCCCAATTATCCGTACGACGATAACAATAAATACAAATATGAAGGCCAGAACTATAATACGTATGAGAAACCTAATTACCCATCTTACGAGGATCCTGGGTATGACACACGTAATTATATGGTTCAACATACAACTGCAGCACCCCAGAATCCCAGCGCTACTTATCCGTCCGACACAGAATACACAAGATACACCAATTATGAAGGACGTGCTGTGTATCCAGTGATGGAAAATCCGGATTACACGGAGAAAGTGAGATACAATTATGGTTATGATCGAAACTATTACGAGGCGGACGGTCGTTACGCGTCCACAGATTGTAGATATACACTGGATGTCCGATATCCAGATACTAGNCACGCGGACAATCGAATTCAAGCTGATAGTAGAGAGGCTGATTGTAGATATCCGNTGGACAATCGTGATATGGATAGAAGATACGTGGTTGATGGTAGAGATCCAGATGGCAGGTACGCTATCGAGAACAGAGAAGTAGATGCTAG] [+] EMBL BI510196 [GTGTTTGTTGTGTTGTACGAAATTTTTATTCTCTTTTTTGAAAAAAGAAACGTTCGCTTTTTTTCGGAAAGATCGTACGTTTTGAAGAGAAAATTATGTCGTCGTACATCCAAGTTGCCGAAGATGAAGGCGATGAACCGATCGAATTGCCAACGGAAGACGATAGTACACTTTTATTGACTACCGTAACCGCCCAGTTTCCCGGAACGTGTGGCCTGAAATATCGCAATCCAGAATCTCGGACGATGCGCGGCATTCGTCTTGTTGACGGACGTCTTCATCCGCCCGAAAATGGATGGGGCAAGGCAATTTACTTTTGTGTTTTTCCAAAAGAGAACAAACGTAAATCTGATGACAATTTGGAAAATTCCACAGCTAAGACTAAAAGAATGGAAACAAAGTTGCGTTGCACAGACTTGATCGTACTTGGTTTACCATGGAAAACAACCGAGCAGAACTTGCGAGAGTATTTTGAAACATTTGGAGAAGTACTCATGGCACAAGTTAAAAAAGATGCAAAATCAGGACAAAGCAAAGGATTTGGCTTTATTAGATTTGGGAGTTATGAATCCCAATTAAGATGTCTTGCTCAACGACAT ] [+] EMBL BI508851 [ CTGAAATATCGCAATCCAGAATCTCGGACGATGCGCGGCATTCGTCTTGTTGACGGACGTCTTCATCCGCCCGAAAATGGATGGGGCAAGGCAATTTACTTTTGTGTTTTTCCAAAAGAGAACAAACGTAAATCTGATGACAATTTGGAAAATTCCACAGCTAAGACTAAAAGAATGGAAACAAAGTTGCGTTGCACAGACTTGATCGTACTTGGTTTACCATGGAAAACAACCGAGCAGAACTTGCGAGAGTATTTTGAAACATTTGGAGAAGTACTCATGGCACAAGTTAAAAAAGATGCAAAATCAGGACAAAGCAAAGGATTTGGCTTTATTAGATTTGGGAGTTATGAATCCCAATTAAGATGTCTTGCTCAACGACATATGATTGATGGGCGATGGTGTGATGTTAAGGTTCCCAACAGTAAGAATATTGATGGCTTAATGATGGCTCGTCAGTATGATACGAGCAAACACAATGAATGCTACCGTCCTATACCGGTTCATACGCCGAGTAATCGACGGGTACCTGTGGCGAAACCTTATATCAACTTAAATACATCTGAAGCTGCTAATACACCTAGATACGATTCGGAGTAT ] [+] EMBL BI504313 [ GGTTGCAGAATATTGATGGCTTAATGATGGCTCGTCAGTATGATACGAGCAAACACAATGAATGCTACCGTCCTATACCGGTTCATACGCCGAGTAATCGACGGGTACCTGTGGCGAAACCTTATATCAACTTAAATACATCTGAAGCTGCTAATACACCTAGATACGATTCGGAGTATGATTATAAAACCACGCATTATCCGTCGTACCCTCCCAATTATCCGTACGACGATAACAATAAATACAAATATGAAGGCCAGAACTATAATACGTATGAGAAACCTAATTACCCATCTTACGAGGATCCTGGGTATGACACACGTAATTATATGGTTCAACATACAACTGCAGCACCCCAGAATCCCAGCGCTACTTATCCGTCCGACACAGAATACACAAGATACACCAATTATGAAGGACGTGCTGTGTATCCAGTGATGGAAAATCCGGATTACACGGAGAAAGTGAGATACAATTATGGTTATGATCGAAACTATTACGAGGCGGACGGTCGTTACGCGTCCACAGATTGTAGATATACACTGGATGTCCGATATCCAGATACTAGNCACGCGGACAATCGAAT ] [+] EMBL BI508796 [ CGCCGAGTAATCGACGGGTACCTGTGGCGAAACCTTATATCAACTTAAATACATCTGAAGCTGCTAATACACCTAGATACGATTCGGAGTATGATTATAAAACCACGCATTATCCGTCGTACCCTCCCAATTATCCGTACGACGATAACAATAAATACAAATATGAAGGCCAGAACTATAATACGTATGAGAAACCTAATTACCCATCTTACGAGGATCCTGGGTATGACACACGTAATTATATGGTTCAACATACAACTGCAGCACCCCAGAATCCCAGCGCTACTTATCCGTCCGACACAGAATACACAAGATACACCAATTATGAAGGACGTGCTGTGTATCCAGTGATGGAAAATCCGGATTACACGGAGAAAGTGAGATACAATTATGGTTATGATCGAAACTATTACGAGGCGGACGGTCGTTACGCGTCCACAGATTGTAGATATACACTGGATGTCCGATATCCAGATACTAGACACGCGGACAATCGAATTCAAGCTGATAGTAGAGAGGCTGATTGTAGATATCCGNTGGACAATCGTGATATGGATAGAAGATACGTGGTTGATGGTAGAGATCCAGATGGCAGGTACGCTATCGAGAACAGAGAAGTAGATGCTAG] consensusID : consensus_297#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence [TCGCTTTTTTTCGGAAAGATCGTACGTTTTGAAGAGAAAATTATGTCGTCGTACATCCAAGTTGCCGAAGATGAAGGCGATGAACCGATCGAATTGCCAACGGAAGACGATAGTACACTTTTATTGACTACCGTAACCGCCCAGTTTCCCGGAACGTGTGGCCTGAAATATCGCAATCCAGAATCTCGGACGATGCGCGGCATTCGTCTTGTTGACGGACGTCTTCATCCGCCCGAAAATGGATGGGGCAAGGCAATTTACTTTTGTGTTTTTCCAAAAGCTAAGACTAAAAGAATGGAAACAAAGTTGCGTTGCACAGACTTGATCGTACTTGGTTTACCATGGAAAACAACCGAGCAGAACTTGCGAGAGTATTTTGAAACATTTGGAGAAGTACTCATGGCACAAGTTAAAAAAGATGCAAAATCAGGACAAAGCAAAGGATTTGGCTTTATTAGATTTGGGAGTTATGAATCCCAATTAAGATGTCTTGCTCAACGACATATGATTGATGG] [+] EMBL BI513500 [TCGCTTTTTTTCGGAAAGATCGTACGTTTTGAAGAGAAAATTATGTCGTCGTACATCCAAGTTGCCGAAGATGAAGGCGATGAACCGATCGAATTGCCAACGGAAGACGATAGTACACTTTTATTGACTACCGTAACCGCCCAGTTTCCCGGAACGTGTGGCCTGAAATATCGCAATCCAGAATCTCGGACGATGCGCGGCATTCGTCTTGTTGACGGACGTCTTCATCCGCCCGAAAATGGATGGGGCAAGGCAATTTACTTTTGTGTTTTTCCAAAAGCTAAGACTAAAAGAATGGAAACAAAGTTGCGTTGCACAGACTTGATCGTACTTGGTTTACCATGGAAAACAACCGAGCAGAACTTGCGAGAGTATTTTGAAACATTTGGAGAAGTACTCATGGCACAAGTTAAAAAAGATGCAAAATCAGGACAAAGCAAAGGATTTGGCTTTATTAGATTTGGGAGTTATGAATCCCAATTAAGATGTCTTGCTCAACGACATATGATTGATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_297#0 GTGTTTGTTGTGTTGTACGAAATTTTTATTCTCTTTTTTGAAAAAAGAAACGTTCGCTTT 60 consensus_297#1 -----------------------------------------------------TCGCTTT 7 ******* consensus_297#0 TTTTCGGAAAGATCGTACGTTTTGAAGAGAAAATTATGTCGTCGTACATCCAAGTTGCCG 120 consensus_297#1 TTTTCGGAAAGATCGTACGTTTTGAAGAGAAAATTATGTCGTCGTACATCCAAGTTGCCG 67 ************************************************************ consensus_297#0 AAGATGAAGGCGATGAACCGATCGAATTGCCAACGGAAGACGATAGTACACTTTTATTGA 180 consensus_297#1 AAGATGAAGGCGATGAACCGATCGAATTGCCAACGGAAGACGATAGTACACTTTTATTGA 127 ************************************************************ consensus_297#0 CTACCGTAACCGCCCAGTTTCCCGGAACGTGTGGCCTGAAATATCGCAATCCAGAATCTC 240 consensus_297#1 CTACCGTAACCGCCCAGTTTCCCGGAACGTGTGGCCTGAAATATCGCAATCCAGAATCTC 187 ************************************************************ consensus_297#0 GGACGATGCGCGGCATTCGTCTTGTTGACGGACGTCTTCATCCGCCCGAAAATGGATGGG 300 consensus_297#1 GGACGATGCGCGGCATTCGTCTTGTTGACGGACGTCTTCATCCGCCCGAAAATGGATGGG 247 ************************************************************ consensus_297#0 GCAAGGCAATTTACTTTTGTGTTTTTCCAAAAGAGAACAAACGTAAATCTGATGACAATT 360 consensus_297#1 GCAAGGCAATTTACTTTTGTGTTTTTCCAAAAG--------------------------- 280 ********************************* consensus_297#0 TGGAAAATTCCACAGCTAAGACTAAAAGAATGGAAACAAAGTTGCGTTGCACAGACTTGA 420 consensus_297#1 ---------------CTAAGACTAAAAGAATGGAAACAAAGTTGCGTTGCACAGACTTGA 325 ********************************************* consensus_297#0 TCGTACTTGGTTTACCATGGAAAACAACCGAGCAGAACTTGCGAGAGTATTTTGAAACAT 480 consensus_297#1 TCGTACTTGGTTTACCATGGAAAACAACCGAGCAGAACTTGCGAGAGTATTTTGAAACAT 385 ************************************************************ consensus_297#0 TTGGAGAAGTACTCATGGCACAAGTTAAAAAAGATGCAAAATCAGGACAAAGCAAAGGAT 540 consensus_297#1 TTGGAGAAGTACTCATGGCACAAGTTAAAAAAGATGCAAAATCAGGACAAAGCAAAGGAT 445 ************************************************************ consensus_297#0 TTGGCTTTATTAGATTTGGGAGTTATGAATCCCAATTAAGATGTCTTGCTCAACGACATA 600 consensus_297#1 TTGGCTTTATTAGATTTGGGAGTTATGAATCCCAATTAAGATGTCTTGCTCAACGACATA 505 ************************************************************ consensus_297#0 TGATTGATGGGCGATGGTGTGATGTTAAGGTTCCCAGGAGGAAGAATATTGATGGCTTAA 660 consensus_297#1 TGATTGATGG-------------------------------------------------- 515 ********** consensus_297#0 TGATGGCTCGTCAGTATGATACGAGCAAACACAATGAATGCTACCGTCCTATACCGGTTC 720 consensus_297#1 ------------------------------------------------------------ consensus_297#0 ATACGCCGAGTAATCGACGGGTACCTGTGGCGAAACCTTATATCAACTTAAATACATCTG 780 consensus_297#1 ------------------------------------------------------------ consensus_297#0 AAGCTGCTAATACACCTAGATACGATTCGGAGTATGATTATAAAACCACGCATTATCCGT 840 consensus_297#1 ------------------------------------------------------------ consensus_297#0 CGTACCCTCCCAATTATCCGTACGACGATAACAATAAATACAAATATGAAGGCCAGAACT 900 consensus_297#1 ------------------------------------------------------------ consensus_297#0 ATAATACGTATGAGAAACCTAATTACCCATCTTACGAGGATCCTGGGTATGACACACGTA 960 consensus_297#1 ------------------------------------------------------------ consensus_297#0 ATTATATGGTTCAACATACAACTGCAGCACCCCAGAATCCCAGCGCTACTTATCCGTCCG 1020 consensus_297#1 ------------------------------------------------------------ consensus_297#0 ACACAGAATACACAAGATACACCAATTATGAAGGACGTGCTGTGTATCCAGTGATGGAAA 1080 consensus_297#1 ------------------------------------------------------------ consensus_297#0 ATCCGGATTACACGGAGAAAGTGAGATACAATTATGGTTATGATCGAAACTATTACGAGG 1140 consensus_297#1 ------------------------------------------------------------ consensus_297#0 CGGACGGTCGTTACGCGTCCACAGATTGTAGATATACACTGGATGTCCGATATCCAGATA 1200 consensus_297#1 ------------------------------------------------------------ consensus_297#0 CTAGNCACGCGGACAATCGAATTCAAGCTGATAGTAGAGAGGCTGATTGTAGATATCCGN 1260 consensus_297#1 ------------------------------------------------------------ consensus_297#0 TGGACAATCGTGATATGGATAGAAGATACGTGGTTGATGGTAGAGATCCAGATGGCAGGT 1320 consensus_297#1 ------------------------------------------------------------ consensus_297#0 ACGCTATCGAGAACAGAGAAGTAGATGCTAG 1351 consensus_297#1 ------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |