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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_300#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 853 fasta sequence
[CTTCCGCTTTTATCTCATCCGCTATCACGGGTTTTTTGTGGTCCAATTTTTTTTTTTTTTTTTTCTATTTCTCCCCCCCTCTCCCCCCTTTTCCTTTTCTTTTTTTTTAAATCGCGTGTTTAAATCGTTTGTTACGTGTGACAATACATGCTCCGTTTATAGGATATTTAAGATTGTACGATGTATTTTTTTTATACGAGAGATGTTTGAAAGCACAAACAACCTGTAACCTCGAGAATGCGNNAAAAATGTTTGTTGGTTCTTTCTCATAGCTTAGATAAATATCGCTATCGATTATCGCC-TTTGCCAATTGCGATTATTATTACCGATTATTACCCTGCGATTTGTATACCGTTTGTTCTAATCAATTAGGATTAAGGATTAATAATGTTTCGATCGATCGATCGATCGATCGATCGATACGGACCGTGATAATTTTATATAAGTTGAAATGATCGGTGCCTTTCGAGGAGAAAGAGAATTCCGTGTCGATGTCTGTCACGAATATTGTACGATAAATTTCGGTCTGTCACTGATATACAATCATATACAATGCTATTTTTAAAAAAAAAGAAAAAAAAACGAATAAACGTATCAAACAATCGCATCGAATAAATCTTTTCACGAACGAGTGGACTTTCGCCGATTTATATATACATATCACTTTGGCTCGTTTTATCATTTTAACAAGCTTTTCGACTCGTATCGTTAAAAGGAAGAAGAGTTTCAAGACTGCGTGCGTTGAAAGAAGCGTGAATAGAATCCTTGCTCGATTCTCCATATACAACGCGAACACCTGTCATCATCGATCGCACGATTTGCTTATGAAACGACTATCTACGTGTATTTTATA]
[+] EMBL BI506607 [CTTCCGCTTTTATCTCATCCGCTATCACGGGTTTTTTGTGGTCCAATTTTTTTTTTTTTTTTTTCTATTTCTCCCCCCCTCTCCCCCCTTTTCCTTTTCTTTTTTTTTAAATCGCGTGTTTAAATCGTTTGTTACGTGTGACAATACATGCTCCGTTTATAGGATATTTAAGATTGTACGATGTATTTTTTTTATACGAGAGATGTTTGAAAGCACAAACAACCTGTAACCTCGAGAATGCGNNAAAAATGTTTGTTGGTTCTTTCTCATAGCTTNNATAAATATCGCTATCGATTATCGCCGTTCGCCAATTGCGATTATTATTACCGATTATTACCCTGCGATTTGTATACCGTTTGTTCTAATCAATTAGGATTAAGGATTAATAATGTT TCGATCGATCGATCGATCGATCGATACGGACCGTGATAATTTTATATAAGTTGAAAT ]
[-] EMBL BI510120 [ AAATGTTTGTTGGTTCTTTCTCATAGCTTAGATAAATATCGCTATCGATTATCGCC TTTGCCAATTGCGATTATTATTACCGATTATTACCCTGCGATTTGTATACCGTTTGTTCTAATCAATTAGGATTAAGGATTAATAATGTTTCGATCGATCGATCGATCGATCGATCGATACGGACCGTGATAATTTTATATAAGTTGAAATGATCGGTGCCTTTCGAGGAGAAAGAGAATTCCGTGTCGATGTCTGTCACGAATATTGTACGATAAATTTCGGTCTGTCACTGATATACAATCATATACAATGCTATTTTT AAAAAAAAGAAAAAAAAACGAATAAACGTATCAAACAATCGCATCGAATAAATCTTTTCACGAACGAGTGGACTTTCGCCGATTTATATATACATATCACTTTGGCTCGTTTTATCATTTTAACAAGCTTTTCGACTCGTATCGTTAAAAGGAAGAAGAGTTTCAAGACTGCGTGCGTTGAAAGAAGCGTGAATAGAATCCTTGCTCGATTCTCCATATACAACGCGAACACC ]
[-] EMBL BI506718 [ AATGTTTGTTGGTTCTTTCTCATAGCTTAGATAAATATCGCTATCGATTATCGCC TTTGCCAATTGCGATTATTATTACCGATTATTACCCTGCGATTTGTATACCGTTTGTTCTAATCAATTAGGATTAAGGATTAATAATGTTTCGATCGATCGATCGATCGATCGATCGATACGGACCGTGATAATTTTATATAAGTTGAAATGATCGGTGCCTTTCGAGGAGAAAGAGAATTCCGTGTCGATGTCTGTCACGAATATTGTACGATAAATTTCGGTCTGTCACTGATATACAATCATATACAATGCTATTTTTAAAAAAAAAGAAAAAAAAACGAATAAACGTATCAAACAATCGCATCGAATAAATCTTTTCACGAACGAGTGGACTTTCGCCGATTTATATATACATATCACTTTGGCTCGTTTTATCATTTTAACAAGCTTTTCGACTCGTATCGTTAAAAGGAAGAAGAGTTTCAAGACTGCGTGCGTTGAAAGAAGCGTGAATAGAATCCTTGCTCGATTCTCCATATACAACGCGAACACCTGTCATCATCGATCGCACGATTTGCTTATGAAACGACTATCTACGTGTATTTTATA]
consensusID : consensus_300#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[CCAAGTTACCGACTTAGAGTTTATAACGTGAACGTTNACATTATTTGTCGCTTTCGAACGGGCGACTTTCTTTTCTCTCTCTCTTTTTCTATTCCTTTCCTTTTCTAACGCGATTACAGTAAAAAATTGTAGAGTTTTTTTTCCCCCTCCTTCCCCCTCCTTTTTACTCTCTCCACTGCTCGGTGTATACCTTTCAGAAAGATTATTATTATTATTATTATTATTATTATTATTATTACTATTATTATTATTATTATTATTATTATTATTATTAACGAGAACGAGATAGATTATGTATAAATATATATATATATACGTATCGTTTATACGTGGTGCACGTGGTGGGAAGTTGATGTACAACGATGAGGAGAAGGATCTTTTTTTAATATCCGCGGGTATGTGGTTATTTTTTACTTTTTATTTCTTTTTTCCCCCCCTCTCCCCCCTTTTCCTTTTCTTTTTTTTTTAAATCGCGTGTTTAAATCGTTTGTTACGTGTGACAATACATGCTCCGTTTATAGGATATTTAAGATTGTACGATGTATTTTTTTTATACGAGAGATGTTTGAAAGCACAAACAACCTGT]
[+] EMBL BI509264 [CCAAGTTACCGACTTAGAGTTTATAACGTGAACGTTNACATTATTTGTCGCTTTCGAACGGGCGACTTTCTTTTCTCTCTCTCTTTTTCTATTCCTTTCCTTTTCTAACGCGATTACAGTAAAAAATTGTAGAGTTTTTTTTCCCCCTCCTTCCCCCTCCTTTTTACTCTCTCCACTGCTCGGTGTATACCTTTCAGAAAGATTATTATTATTATTATTATTATTATTATTATTATTACTATTATTATTATTATTATTATTATTATTATTATTAACGAGAACGAGATAGATTATGTATAAATATATATATATATACGTATCGTTTATACGTGGTGCACGTGGTGGGAAGTTGATGTACAACGATGAGGAGAAGGATCTTTTTTTAATATCCGCGGGTATGTGGTTATTTTTTACTTTTTATTTCTTTTTTCCCCCCCTCTCCCCCCTTTTCCTTTTCTTTTTTTTTTAAATCGCGTGTTTAAATCGTTTGTTACGTGTGACAATACATGCTCCGTTTATAGGATATTTAAGATTGTACGATGTATTTTTTTTATACGAGAGATGTTTGAAAGCACAAACAACCTGT]
consensusID : consensus_300#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence
[TTCTTTTTTTTCTTTTTTTTTTTGCCCTTCTTTTTTCTCCTTCGTGAACGAATCTTACGAACTATAGAAATATGTCGGATTGACCACGAACGATCGAACCATCGAGAAATCCTTTTCGCGCGCTTTCGCCGTACTTCCGCTTTTATCTCATCCGCTATCACGGGTTTTTTGTGGTCCAATTTTTTTTTTTTTTTTTTCATTGGGCTTTGCTAAAAGTTCCCTGGTCACTTCATAACCTCCAAAAAAAAAGAAATAACCAGGCATTTCACGTGCTATGGTTGATGATAACCCAGTAAATAAACCTCTCATGCCTTGATTTTTAAGAATTTGACGTGTCAATCCCCATGGTCCAATTTTTTTCTAAACAAGATACTTTTTTCAAAATTTAATTTTCATGAATNTTTATATATTAATTTTTATTTATTTTTTATTTTAGTTATACTAACTTCACTTATTGATGATTCGCTTTCTATTTG]
[+] EMBL BI511473 [TTCTTTTTTTTCTTTTTTTTTTTGCCCTTCTTTTTTCTCCTTCGTGAACGAATCTTACGAACTATAGAAATATGTCGGATTGACCACGAACGATCGAACCATCGAGAAATCCTTTTCGCGCGCTTTCGCCGTACTTCCGCTTTTATCTCATCCGCTATCACGGGTTTTTTGTGGTCCAATTTTTTTTTTTTTTTTTTCATTGGGCTTTGCTAAAAGTTCCCTGGTCACTTCATAACCTCCAAAAAAAAAGAAATAACCAGGCATTTCACGTGCTATGGTTGATGATAACCCAGTAAATAAACCTCTCATGCCTTGATTTTTAAGAATTTGACGTGTCAATCCCCATGGTCCAATTTTTTTCTAAACAAGATACTTTTTTCAAAATTTAATTTTCATGAATNTTTATATATTAATTTTTATTTATTTTTTATTTTAGTTATACTAACTTCACTTATTGATGATTCGCTTTCTATTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_300#0 CTTCCGCTTTTATCTCATCCGCTATCACGGGTTTTTTGTGGTCCAATTTTTTTTTTTTTT 60
consensus_300#1 ------------------------------------------------------------
consensus_300#2 ------------------------------------------------------------
consensus_300#0 TTTTCTATTTCTCCCCCCCTCTCCCCCCTTTTCCTTTTCTTTTTTTTTAAATCGCGTGTT 120
consensus_300#1 ------------------------CCAAGTTACCGACTTAGAGTTTATAACGTGAACGTT 36
consensus_300#2 ------------------------------------------------------------
consensus_300#0 TAAATCGTTTGTTACGTGTGACAATACATGCTCCGTTTATAGGATATTTAAGATTGTACG 180
consensus_300#1 NACATTATTTGTCGCTTTCGAACGGGCGACTTTCTTTTCTC---TCTCTCTTTTTCTATT 93
consensus_300#2 ------------------------------TTCTTTTTTTTC--TTTTTTTTTTTGCCCT 28
* *** * * * * **
consensus_300#0 ATGTATTTTTTTTATACGAGAGATGTTTGAAAGCACAAACAACCTGTAACCTCGAGAATG 240
consensus_300#1 CCTTTCCTTTTCTA-ACGCGATTACAGTAAAAAATTGTAGAGTTTTTTTTCCCCCTCCTT 152
consensus_300#2 TCTTTTTTCTCCTTCGTGAACGAATCTTACGAACTATAGAAATATGTCGGATTGACCACG 88
* * * * * * * * * *
consensus_300#0 CGNNAAAAATGTTTGTTGGTTCTTTCTCATAGCTTAGATAAATATCGCTATCGATTATCG 300
consensus_300#1 CCCC-----CTCCTTTTTACTCTCTC-CACTGCTCGG-TGTATACCTTTCAGAAAGATTA 205
consensus_300#2 AACG----------ATCGAACCATCGAGAAATCCTTTTCGCGCGCTTTCGCCGTACTTCC 138
* * * * *
consensus_300#0 CCTTTGCCAATTGCGATTATTATTACCGATTATTACCCTGCGATTTGTATACCGTTTGTT 360
consensus_300#1 TTATT----ATTATTATTATTATTATT-ATTATTAT--TACTATTATTATTATTATTATT 258
consensus_300#2 GCTTT---TATCTCATCCGCTATCACGGGTTTTT----TGTGGTCCAATTTTTTTTTTTT 191
** ** *** * ** ** * * * ** **
consensus_300#0 CTAATCAATTAGGATTAAGGATTAATAATGTTTCGATCGATCGATCGATCGATCGATCGA 420
consensus_300#1 ATTATTA-TTATTATTAACGAG-AACGAGATA--GATT-ATGTATAAATATATATATATA 313
consensus_300#2 TTTTTTCATTGGGCTTTGCTAAAAGTTCCCT---GGTCACTTCATAA--CCTCCAAAAAA 246
* * ** ** * * * * * * ** * *
consensus_300#0 TACGGACCGTGATAATTTTATATAAGTTGAAATGA-TCGGTGCCTTTCGAGGAGAAAGAG 479
consensus_300#1 TACGTATCGTTTATACGTGGTGCACGTGGTGGGAAGTTGATGTACAACGATGAGGAGAAG 373
consensus_300#2 AAAGAAATAACCAGGCATTTCACGTGCTATGG----TTGATG-ATAACCCAGTAAATAAA 301
* * * * * * * ** * * * *
consensus_300#0 AATTCCGTGTCGATGTCTGTCACGA-------ATATTGTACGATAAATTTCGGTCTGTCA 532
consensus_300#1 GATCTTTTTTTAATATCCGCGGGTATGTGGTTATTTTTTACTTTTTATTTCTTTTTTCCC 433
consensus_300#2 CCTCTCATGCCTTGATTTTTAAGAA----------TTTGACGTGTCAATCCCCATGGT-- 349
* * * * ** ** * * *
consensus_300#0 CTGATATACAATCATATACAATGCTATTTTTAAAAAAAAAGAAAAAAAAACGAATAAACG 592
consensus_300#1 CCCCTCTCCCCCCTTTTCCTTTTCTTTTTTTTTTAAATCGCGTGTTTAAATCGTTTGTTA 493
consensus_300#2 CCAATTTTTTTCTAAACAAGATACTTTTTTCAAAATTTAATTTTCATGAATNTTTATATA 409
* * * * ** **** * ** *
consensus_300#0 TATCAAACAATCGCATCGAATAAATCTTTTCACGAACGAGTGGACTTTCGCCGATTTATA 652
consensus_300#1 CGTGTGACAAT-ACAT------GCTCCGTTTATAGGATATTTAAGATTGTACGATGTAT- 545
consensus_300#2 T---TAATTTTTATTT------ATTTTTTATTTTAGTTATACTAACTTCACTTATTGATG 460
* * * * * * * ** ** **
consensus_300#0 -TATACATATCACTTTGGCTCGTTTTATCATTTTAACAAGCTTTTCGACTCGTATCGTTA 711
consensus_300#1 -TTTTTTTAT-ACGAGAGAT-GTTTGAAAGCACAAACAACCTGT---------------- 586
consensus_300#2 ATTCGCTTTCTATTTG-------------------------------------------- 476
* * *
consensus_300#0 AAAGGAAGAAGAGTTTCAAGACTGCGTGCGTTGAAAGAAGCGTGAATAGAATCCTTGCTC 771
consensus_300#1 ------------------------------------------------------------
consensus_300#2 ------------------------------------------------------------
consensus_300#0 GATTCTCCATATACAACGCGAACACCTGTCATCATCGATCGCACGATTTGCTTATGAAAC 831
consensus_300#1 ------------------------------------------------------------
consensus_300#2 ------------------------------------------------------------
consensus_300#0 GACTATCTACGTGTATTTTATA 853
consensus_300#1 ----------------------
consensus_300#2 ----------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |