These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_315#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1002 fasta sequence [GTACATTAAGTACCTATATTTCCACCATTTTACTGGATTTCCGGGCTATCGATCGACGCTTCGCCAATTATGAAAGCCGGTGGCAGATAATGACAGCGTGTCAGAAATGCACATTTAGTTTGCGAATAAGTTTATTAAAAGCGTGCATGTCTTTATATGTAAAAGAAAAAGAAAATGGATAAAAATTATGATTAATTCAAACTTGTTAAAACAGAAGTTATACTGGAAATTAATGAAAAGACATTGTGTTATAATACTAATTTACTGCTAAACGAGGAAAATGATAAAAGAAATTAAAGAATTAAATTTTGGTAAATAAGTCTTTCTTTTCAAATAAGAGTCCTAGAAGTTATACAGATTGTTTTTTTGGAAATATATTGAGTGCAATATTTGACATACATTAAATATATGAAGCTAGTTTTTCATGGAGTTTCATCCCAAACATTTTTGAAAATATTCGAGTTTATTCCATTGTCAATGGATTATATTATAATACTAATGCAAAGGGGAAGTGAGAGTGTGCATTTTAGTTCTCACAGTTTNCCTCAAAACATACCAAACAAAAAAGATACAGTAAAAATATAATGTACACACGCGCGCGCGCGTGCGCGCACACACATACACACACCACACACAGAAAATATATGTGTGTCATTATAGATATTCAAAATATATATACATATATATTTATATGTATATACAGCATAAAACTGAAAGATTGTACTGTATCAGAATATGTAATATTTTGTGTTATGATTGGAATTTATTGTAATTCAAAAGTATTTTGAGAGAGTATCCTTTCTAGCGACGAGTCGGAACTTAACTGGTTAAAATTAAGCAAGTAATATATTTATTGAAGTTAAAGTGTGGTAAATTTTAGAAATGTTGGAATTATGTTTCATATAACGAGTTACTGATTTATTTCACATGTGCAGTCATATAATGTGAAATGATATATTGTGAACACTAAAATAGATACTGAAAAATTATATTATAAATTTG] [+] EMBL BI504109 [GTACATTAAGTACCTATATTTCCACCATTTTACTGGATTTCCGGGCTATCGATCGACGCTTCGCCAATTATGAAAGCCGGTGGCAGATAATGACAGCGTGTCAGAAATGCACATTTAGTTTGCGAATAAGTTTATTAAAAGCGTGCATGTCTTTATATGTAAAAGAAAAAGAAAATGGATAAAAATTATGATTAATTCAAACTTGTTAAAACAGAAGTTATACTGGAAATTAATGAAAAGACATTGTGTTATAATACTAATTTACTGCTAAACGAGGAAAATGATAAAAGAAATTAAAGAATTAAATTTTGGTAAATAAGTCTTTCTTTTCAAATAAGAGTCCTAGAAGTTATACAGATTGTTTTTTTGGAAATATATTGAGTGCAATATTTGACATACATTAAATATATGAAGCTAGTTTTTCATAGAGTTTCATCCCAAACATTTTTGAAAATATTCGAGTTTATTCCATTGTCAATGGATTATATTATAATACTAATGCAAAGGGGAAGTGAGAGTGTGCATTTTAGTTCTCACAGTTTNCCTCAAAACATACCAAACAAAAAAGATACAGTAAAAATATAATGTACACACGCGCGCGCGCGTGCGCGCACACACAT ] [+] EMBL BI510392 [ TATATTGAGTGCAATATTTGACATACATTAAATATATGAAGCTAGTTTTTCATGGAGTTTCATCCCAAACATTTTTGAAAATATTCGAGTTTATTCCATTGTCAATGGATTATATTATAATACTAATGCAAAGGGGAAGTGAGAGTGTGCATTTTAGTTCTCACAGTTTGCCTCAAAACATACCAAACAAAAAAGATACAGTAAAAATATAATGTACACACGCGCGCGCGCGTGCGCGCACACACATACACACACCACACACAGAAAATATATGTGTGTCATTATAGATATTCAAAATATATATACATATATATTTATATGTATATACAGCATAAAACTGAAAGATTGTACTGTATCAGAATATGTAATATTTTGTGTTATGATTGGAATTTATTGTAATTCAAAAGTATTTTGAGAGAGTATCCTTTCTAGCGACGAGTCGGAACTTAACTGGTTAAAATTAAGCAAGTAATATATTTATTGAAGTTAAAGTGTGGTAAATTTTAGAAATGTTGGAATTATGTTTCATATAACGAGTTACTGATTTATTTCACATGTGCAGTCATATAATGTGAAATGATATATTGTGAACACTAAAATAGATACTGAAAAATTATATTATAAATTTG] consensusID : consensus_315#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 672 fasta sequence [TCTTATATTTTTCTTTCTTACTCCAATTACTTTCTTCTACGGCAAATACAAGTTATTTCATTTCTTTGCGCTTTATAAGTAACCGTTGTAACTTAGTAACTCTTAGTTCGAGGAATTATTTAGAAAGCTTTTTAAGTAACAATATATTTTTTTTTTTTATATATCGCCACAAGCTAAATACGTTCGATAATTTTAATACATTCGAATAGAGCAGGCTAAACATTTACTGGCCCATTTTTTCTATTTTTCATAATATCGTGCAATTGGAGTTTTTTTAATACAGTGAGCGAAATATTTGTTCCACTATTTCGCGGATTAATGGTCGATTAACTTAGGCTGAGACAATCTAAAGTGATAACCTTTTTTTTTTTTTATTGTTGTTTATAGATTTTTGTCATAGGTGTCGTCCAATAAGTACGGAACGTGTTACATGTATGTATATATATACGCGTGTCTAGGAGGACAAAAAACCGAATGGAAAAAAAAAAAAAAAAAAATTTCGTGTTTCGAAATTTCAATTTGTATCGATATTATTTTCAAGACCTAAAAATTTAGTTAGGAATGTAAGGAAAGGGTGTAAAGGAAGTTGGAAAGAAAAAAGCGCATTCGTAAAAGGAATACAAAGAGAAACAAATGAAGAGGGTGTGTGTCTAAGTGCTTATCAAGGATAAG] [+] EMBL BI514524 [TCTTATATTTTTCTTTCTTACTCCAATTACTTTCTTCTACGGCAAATACAAGTTATTTCATTTCTTTGCGCTTTATAAGTAACCGTTGTAACTTAGTAACTCTTAGTTCGAGGAATTATTTAGAAAGCTTTTTAAGTAACAATATATTTTTTTTTTTTATATATCGCCACAAGCTAAATACGTTCGATAATTTTAATACATTCGAATAGAGCAGGCTAAACATTTACTGGCCCATTTTTTCTATTTTTCATAATATCGTGCAATTGGAGTTTTTTTAATACAGTGAGCGAAATATTTGTTCCACTATTTCGCGGATTAATGGTCGATTAACTTAGGCTGAGACAATCTAAAGTGATAACCT ] [+] EMBL BI514272 [ TTTAATACAGTGAGCGAAATATTTGTTCCACTATTTCGCGGATTAATGGTCGATTAACTTAGGCTGAGACAATCTAAAGTGATAACCTTTTTTTTTTTTTATTGTTGTTTATAGATTTTTGTCATAGGTGTCGTCCAATAAGTACGGAACGTGTTACATGTATGTATATATATACGCGTGTCTAGGAGGACAAAAAACCGAATGGAAAAAAAAAAAAAAAAAAATTTCGTGTTTCGAAATTTCAATTTGTATCGATATTATTTTCAAGACCTAAAAATTTAGTTAGGAATGTAAGGAAAGGGTGTAAAGGAAGTTGGAAAGAAAAAAGCGCATTCGTAAAAGGAATACAAAGAGAAACAAATGAAGAGGGTGTGTGTCTAAGTGCTTATCAAGGATAAG] consensusID : consensus_315#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence [ATCGTGCAATTGGAGTTTTTTTAATACAGTGAGCGAAATATTTGTTCCACTATTTCGCGGATTAATGGTCGATTAACTTAGGCTGAGACAATCTAAAGTGATAACCTTTTTTTTTTTTTATTGTTGTTTATAGATTTTTGTCATAGGATTATATTATAATACTAATGCAAAGGGGAAGTGAGAGTGTGCATTTTAGTTCTCACAGTTTGCCTCAAAACATACCAAACAAAAAAGATACAGTAAAAATATAATGTACACACGCGCGCGCGCGTGCGCGCACACACATACACACACCACACACAGAAAATATATGTGTGTCATTATAGATATTCAAAATATATATACATATATATTTATATGTATATACAGCATAAAACTGAAAGATTGTACTGTATCAGAATATGTAATATTTTGTGTTATGATTGGAATTTATTGTAATTCAAAAGTATTTTGAGAGAGTATCCTTTCTAGCGACGAGTCGGAACTTAACTGGTTAAAATTAAGCAAGTAATATA] [+] EMBL BI506938 [ATCGTGCAATTGGAGTTTTTTTAATACAGTGAGCGAAATATTTGTTCCACTATTTCGCGGATTAATGGTCGATTAACTTAGGCTGAGACAATCTAAAGTGATAACCTTTTTTTTTTTTTATTGTTGTTTATAGATTTTTGTCATAGGATTATATTATAATACTAATGCAAAGGGGAAGTGAGAGTGTGCATTTTAGTTCTCACAGTTTGCCTCAAAACATACCAAACAAAAAAGATACAGTAAAAATATAATGTACACACGCGCGCGCGCGTGCGCGCACACACATACACACACCACACACAGAAAATATATGTGTGTCATTATAGATATTCAAAATATATATACATATATATTTATATGTATATACAGCATAAAACTGAAAGATTGTACTGTATCAGAATATGTAATATTTTGTGTTATGATTGGAATTTATTGTAATTCAAAAGTATTTTGAGAGAGTATCCTTTCTAGCGACGAGTCGGAACTTAACTGGTTAAAATTAAGCAAGTAATATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_315#0 GTACATTAAGTACCTATATTTCCACCATTTTACTGGATTTCCGGGCTATCGATCGACGCT 60 consensus_315#2 ------------------------------------------------------------ consensus_315#1 ------------------------------------------------------------ consensus_315#0 TCGCCAATTATGAAAGCCGGTGGCAGATAATGACAGCGTGTCAGAAATGCACATTTAGTT 120 consensus_315#2 ------------------------------------------------------------ consensus_315#1 ----------TCTTATATTTTTCTTTCTTACTCCAATTACTTTCTTCTACGGCAAATACA 50 consensus_315#0 TGCGAATAAGTTTATTAAAAGCGTGCATGTCTTTATATGTAAAAGAAAAAGAAAATGGAT 180 consensus_315#2 ------------------------------------------------------------ consensus_315#1 AGTTATTTCATTTCTTTGCGCTTTATAAGTAACCGTTGTAACTTAGTAACTCTTAGTTCG 110 consensus_315#0 AAAAATTATGATTAATTCAAACTTGTTAAAACAGAAGTTATACTGGAAATTAATGAAAAG 240 consensus_315#2 ------------------------------------------------------------ consensus_315#1 AGGAATTATTTAGAAAGCTTTTTAAGTAACAATATATTTTTTTTTTTTATATATCGCCAC 170 consensus_315#0 ACATTGTGTTATAATACTAATTTACTGCTAAACGAGGAAAATGATAAAAGAAATTAAAGA 300 consensus_315#2 ------------------------------------------------------------ consensus_315#1 AAGCTAAATACGTTCGATAATTTTAATACATTCGAATAGAGCAGGCTAA-ACATTTACTG 229 consensus_315#0 ATTAAATTTTGGTAAATAAGTCTTTCTTTTCAAATAAGAGTCCTAGAAGTTATACAGATT 360 consensus_315#2 -------------------------ATCGTGCAATTGGAGTTTTTT---TAATACAG--- 29 consensus_315#1 GCCCATTTTTTCTATTTTTCATAATATCGTGCAATTGGAGTTTTTT---TAATACAG--- 283 * * *** **** * * ****** consensus_315#0 GTTTTTTTGGAAATATATTGAGTGCAATATTTGACATACATTAAATATATGAAGCTAGTT 420 consensus_315#2 ------TGAGCGAAATATTTGTTCCACTATTTCGCGGATTAATGGTCGATTAACTTAGGC 83 consensus_315#1 ------TGAGCGAAATATTTGTTCCACTATTTCGCGGATTAATGGTCGATTAACTTAGGC 337 * * * ***** * ** ***** * * * ** ** *** consensus_315#0 TTTCATGGAGTTTCATCCCAAACATTTTTGAAAAT-ATTCGAGTTTATT--CCATTGTCA 477 consensus_315#2 TGAGACAATCTAAAGTGATAACCTTTTTTTTTTTTTATTGTTGTTTATAGATTTTTGTCA 143 consensus_315#1 TGAGACAATCTAAAGTGATAACCTTTTTTTTTTTTTATTGTTGTTTATAGATTTTTGTCA 397 * * * * ** * ***** * *** ****** ****** consensus_315#0 ATGGATTATATTATAATACTAATGCAAAGGGGAAGTGAGAGTGTGCATTTTAGTTCTCAC 537 consensus_315#2 TAGGATTATATTATAATACTAATGCAAAGGGGAAGTGAGAGTGTGCATTTTAGTTCTCAC 203 consensus_315#1 TAGG--TGTCGTCCAATAAGTACGGAACGTGT---TACATGTATGTATATATATACGCGT 452 ** * * * **** * * ** * * * ** ** ** * * * * consensus_315#0 AGTTTNCCTCAAAACATACCAAACAAAAAAGATACAGTAAAAATATAATGTACACACGCG 597 consensus_315#2 AGTTTGCCTCAAAACATACCAAACAAAAAAGATACAGTAAAAATATAATGTACACACGCG 263 consensus_315#1 GTCTAGGAGGACAAAAAACCGAATGGAAAAAAAAAAAAAAAAAAATTTCGTGTTTCGAAA 512 * * ** * *** ** **** * * * ***** ** ** consensus_315#0 CGCGCGCGTGCGCGCACACACATACACACACCACACACAGAAAATATATGTGTGTCATTA 657 consensus_315#2 CGCGCGCGTGCGCGCACACACATACACACACCACACACAGAAAATATATGTGTGTCATTA 323 consensus_315#1 TTTCAATTTGTATCGATAT-TATTTTCAAGACCTAAAAATTTAGT-TAGGAATGTAAGGA 570 ** * * ** ** * * * * * * ** * *** * * consensus_315#0 TAGATATTCAAAATATATATACATATATATTTATATGTATATACAGCATAAAACTGAAAG 717 consensus_315#2 TAGATATTCAAAATATATATACATATATATTTATATGTATATACAGCATAAAACTGAAAG 383 consensus_315#1 AAGGGTGTAAAGGAAGTTGGAAAGAAAAAAGCGCATTCGTAAAAGGAATACAA--AGAGA 628 ** * ** * * * * * * * ** ** * * *** ** * consensus_315#0 ATTGTACTGTATCAGAATATGTAATATTTTGTGTTATGATTGGAATTTATTGTAATTCAA 777 consensus_315#2 ATTGTACTGTATCAGAATATGTAATATTTTGTGTTATGATTGGAATTTATTGTAATTCAA 443 consensus_315#1 AACAAATGAAGAGGGTGTGTGTCTAAGTGCTTATCAAGGATAAG---------------- 672 * * * * *** * * * * * * * consensus_315#0 AAGTATTTTGAGAGAGTATCCTTTCTAGCGACGAGTCGGAACTTAACTGGTTAAAATTAA 837 consensus_315#2 AAGTATTTTGAGAGAGTATCCTTTCTAGCGACGAGTCGGAACTTAACTGGTTAAAATTAA 503 consensus_315#1 ------------------------------------------------------------ consensus_315#0 GCAAGTAATATATTTATTGAAGTTAAAGTGTGGTAAATTTTAGAAATGTTGGAATTATGT 897 consensus_315#2 GCAAGTAATATA------------------------------------------------ 515 consensus_315#1 ------------------------------------------------------------ consensus_315#0 TTCATATAACGAGTTACTGATTTATTTCACATGTGCAGTCATATAATGTGAAATGATATA 957 consensus_315#2 ------------------------------------------------------------ consensus_315#1 ------------------------------------------------------------ consensus_315#0 TTGTGAACACTAAAATAGATACTGAAAAATTATATTATAAATTTG 1002 consensus_315#2 --------------------------------------------- consensus_315#1 --------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |