|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_318#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 627 fasta sequence
[AAAAGAAGAAACCTTTCCTTTCGAAAGATTGATACGATCAAATTCTACTGACCTAGAAGCTAGATCACGCTAATTGAATGGAAGGGGATCGTAGACGGGGCAGACGAGAGCATTGAGAACGTGTATATTATAGGTGAACGCGGTTGGCAATATTTCGTCTCGAATTCGATTTCTCTGCCCTGTGAAAACGAACGAAGGAATTTCGTGTGATCGATTGTTGCGTTCATCATCAGGGATAAAAGTATATCCTTCTTCGATTCCCTCTCGACTCGAGCGTTCCAAGCATTACATGCGAATAGAGCACAGATACTTTCTTAATTAATTTTCTATGCGGCCATTCGAATCATCGACACGCTTAAACGCTGGATTTAAATCGAATTCTTTCGATGTATAATCGAGAGGGGGATTGATTCAACGAATCTTTCTCTTTTTGAAAATATGCTGAAGGAGGAACGAAGACTCTCCCTGCAAATTTCTTTGAGAATTTTTCGGGAGATCGGTCAAGAGACAATCGAACGAGGCTGATTAAATCAATAATAAATAACGACGATAATCAAAAATATCTAATTTTTATCTGATTTACTTCTGCGTCTCCGAAGAATCTTTATTCTCTCAGCGCAAAATCAT]
[+] EMBL BI514171 [AAAAGAAGAAACCTTTCCTTTCGAAAGATTGATACGATCAAATTCTACTGACCTAGAAGCTAGATCACGCTAATTGAATGGAAGGGGATCGTAGACGGGGCAGACGAGAGCATTGAGAACGTGTATATTATAGGTGAACGCGGTTGGCAATATTTCGTCTCGAATTCGATTTCTCTGCCCTGTGAAAACGAACGAAGGAATTTCGTGTGATCGATTGTTGCGTTCATCATCAGGGATAAAAGTATATCCTTCTTCGATTCCCTCTCGACTCGAGCGTTCCAAGCATTACATGCGAATAGAGCACAGATACTTTCTTAATTAATTTTCTATGCGGCCATTCGAATCATCGACACGCTTAAACGCTGGATTTAAATCGAATTCTTTCGATGTATAATCGAGAGGGGGATTGATTCAACGAATCTTTCTCTTTTTGAAAATATGCTGAAGGAGGAACGAAGACTCTCCCTGCAAATTTCTTTGAG ]
[+] EMBL BI516790 [ AAAGAAGAAACCTTTCCTTTCGAAAGATTGATACGATCAAATTCTACTGACCTAGAAGCTAGATCACGCTAATTGAATGGAAGGGGATCGTAGACGGGGCAGACGAGAGCATTGAGAACGTGTATATTATAGGTGAACGCGGTTGGCAATATTTCGTCTCGAATTCGATTTCTCTGCCCTGTGAAAACGAACGAAGGAATTTCGTGTGATCGATTGTTGCGTTCATCATCAGGGATAAAAGTATATCCTTCTTCGATTCCCTCTCGACTCGAGCGTTCCAAGCATTACATGCGAATAGAGCACAGATACTTTCTTAATTAATTTTCTATGCGGCCATTCGAATCATCGACACGCTTAAACGCTGGATTTAAATCGAATTCTTTCGATGTATAATCGAGNGGGGGATTGATTCAACGAATCTTTCTCTTTTTGAAAATATG ]
[+] EMBL BI513971 [ AGACGGGGCAGACGAGAGCATTGAGAACGTGTATATTATAGGTGAACGCGGTTGGCAATATTTCGTCTCGAATTCGATTTCTCTGCCCTGTGAAAACGAACGAAGGAATTTCGTGTGATCGATTGTTGCGTTCATCATCAGGGATAAAAGTATATCCTTCTTCGATTCCCTCTCGACTCGAGCGTTCCAAGCATTACATGCGAATAGAGCACAGATACTTTCTTAATTAATTTTCTATGCGGCCATTCGAATCATCGACACGCTTAAACGCTGGATTTAAATCGAATTCTTTCGATGTATAATCGAGAGGGGGATTGATTCAACGAATCTTTCTCTTTTTGAAAATATGCTGAAGGAGGAACGAAGACTCTCCCTGCAAATTTCTTTGAGAATTTTTCGGGAGATCGGTCAAGAGACAATCGAACGAGGCTGATTAAATCAATAATAAATAACGACGATAATCAAAAATATCTAATTTTTATCTGATTTACTTCTGCGTCTCCGAAGAATCTTTATTCTCTCAGCGCAAAATCAT]
[+] EMBL BI513884 [ AGACGGGGCAGACGAGAGCATTGAGAACGTGTATATTATAGGTGAACGCGGTTGGCAATATTTCGTCTCGAATTCGATTTCTCTGCCCTGTGAAAACGAACGAAGGAATTTCGTGTGATCGATTGTTGCGTTCATCATCAGGGATAAAAGTATATCCTTCTTCGATTCCCTCTCGACTCGAGCGTTCCAAGCATTACATGCGAATAGAGCACAGATACTTTCTTAATTAATTTTCTATGCGGCCATTCGAATCATCGACACGCTTAAACGCTGGATTTAAATCGAATTCTTTCGATGTATAATCGAGAGGGGGATTGATTCAACGAATCTTTCTCTTTTTGAAAATATGCTGAAGGAGGAACGAAGACTCTCCCTGCAAATTTCTTTGAGAATTTTTCGGGAGATCGGTCAAGAGACAATCGAACGAGGCTGATTAAATCAATAATAAATAACGACGATAATCAAAAATATCTAATTTTTATCTGATTTACTTCTGCGTCTCCGAAGAATCT ]
consensusID : consensus_318#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence
[AAAAAAGAAGAAACCTTTCCTTTCGAAAGATTGATACGATCAAATTCTACTGACCTAGAAGCTAGATCACGCTAATTGAATGGAAAGGGATCGTAGACGGGGCAGACGAAAGTGTGTATATTATAGGTGAACGCGGTTGGTAATATCTCGTCTCGAATTCGATTTCTCTGCCCTGTGAAAACGAACGAAGGAATTTCGTGTGATCGATTGTTGCGTTCATCATCAGGGATAAAAGTATATCCTTCTTTCGTCCCTCTCGACTCGAGCATTCCAAGCATTACGTGCGAATAGAGCACAGATACTTTCTTAATTAATTTCCTATGCGGCCATTCGAAAAA]
[+] EMBL BI504059 [AAAAAAGAAGAAACCTTTCCTTTCGAAAGATTGATACGATCAAATTCTACTGACCTAGAAGCTAGATCACGCTAATTGAATGGAAAGGGATCGTAGACGGGGCAGACGAAAGTGTGTATATTATAGGTGAACGCGGTTGGTAATATCTCGTCTCGAATTCGATTTCTCTGCCCTGTGAAAACGAACGAAGGAATTTCGTGTGATCGATTGTTGCGTTCATCATCAGGGATAAAAGTATATCCTTCTTTCGTCCCTCTCGACTCGAGCATTCCAAGCATTACGTGCGAATAGAGCACAGATACTTTCTTAATTAATTTCCTATGCGGCCATTCGAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_318#0 --AAAAGAAGAAACCTTTCCTTTCGAAAGATTGATACGATCAAATTCTACTGACCTAGAA 58
consensus_318#1 AAAAAAGAAGAAACCTTTCCTTTCGAAAGATTGATACGATCAAATTCTACTGACCTAGAA 60
**********************************************************
consensus_318#0 GCTAGATCACGCTAATTGAATGGAAGGGGATCGTAGACGGGGCAGACGAGAGCATTGAGA 118
consensus_318#1 GCTAGATCACGCTAATTGAATGGAAAGGGATCGTAGACGGGGCAGACGAAAGT------- 113
************************* *********************** **
consensus_318#0 ACGTGTATATTATAGGTGAACGCGGTTGGCAATATTTCGTCTCGAATTCGATTTCTCTGC 178
consensus_318#1 --GTGTATATTATAGGTGAACGCGGTTGGTAATATCTCGTCTCGAATTCGATTTCTCTGC 171
*************************** ***** ************************
consensus_318#0 CCTGTGAAAACGAACGAAGGAATTTCGTGTGATCGATTGTTGCGTTCATCATCAGGGATA 238
consensus_318#1 CCTGTGAAAACGAACGAAGGAATTTCGTGTGATCGATTGTTGCGTTCATCATCAGGGATA 231
************************************************************
consensus_318#0 AAAGTATATCCTTCTTCGATTCCCTCTCGACTCGAGCGTTCCAAGCATTACATGCGAATA 298
consensus_318#1 AAAGTATATCCTTCTTTCGT-CCCTCTCGACTCGAGCATTCCAAGCATTACGTGCGAATA 290
**************** * **************** ************* ********
consensus_318#0 GAGCACAGATACTTTCTTAATTAATTTTCTATGCGGCCATTCGAATCATCGACACGCTTA 358
consensus_318#1 GAGCACAGATACTTTCTTAATTAATTTCCTATGCGGCCATTCGAAAAA------------ 338
*************************** ***************** *
consensus_318#0 AACGCTGGATTTAAATCGAATTCTTTCGATGTATAATCGAGAGGGGGATTGATTCAACGA 418
consensus_318#1 ------------------------------------------------------------
consensus_318#0 ATCTTTCTCTTTTTGAAAATATGCTGAAGGAGGAACGAAGACTCTCCCTGCAAATTTCTT 478
consensus_318#1 ------------------------------------------------------------
consensus_318#0 TGAGAATTTTTCGGGAGATCGGTCAAGAGACAATCGAACGAGGCTGATTAAATCAATAAT 538
consensus_318#1 ------------------------------------------------------------
consensus_318#0 AAATAACGACGATAATCAAAAATATCTAATTTTTATCTGATTTACTTCTGCGTCTCCGAA 598
consensus_318#1 ------------------------------------------------------------
consensus_318#0 GAATCTTTATTCTCTCAGCGCAAAATCAT 627
consensus_318#1 -----------------------------
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |