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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_32#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 875 fasta sequence
[TTTTAATTATAATGAATTATAGCCAATAGTCAGATTTAAATCAAATCTGCGACATTCATTGGCATTTCTTCGATACTAGTATTATAGAATTGTTCAATATCTTTCAAGGTTCGTTTATCGTCGTCAGTTACCAAGTTAATTGCCACTCCCTTGCGACCGAAACGACCACCTCGACCGATTCTGTGAATATAATTTTCACGATTGGAAGGTAAATCATAATTGATGACAAGTGAAACCTGTTGAACATCAATACCACGTGCTCTCGTGCCGCTCGTGCCGGTTTCGCCTTCGTCGTGCCACAGTCAGCGCGGACACAGCCTGCGTTTCCTTTCACCTGCGTGAATCATGAAGTCGATCGTTTTACTAGCGTTGGTCGTCGCGTGCGCCCTCGTCTTGGCCGAGACGGCGAGCACCTCTTCCTC-GACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGA-TTTGCG-CCCATGATCCGAACGAC-GCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCGAGATGGGGACGAAATTGGTGATGAAGAGCAAAGGCGAGTGTCCAGGATCCGGCGGCGTGAGGCTCTCTTGAACGGCAACCTCGAAGGATCGCGTCACCTCG-CATCATTCTTCACGATCGAGGGAAAAACAATGCTTGAGCAATTATCTTATGTATTAACGACGGGCTTGTGATTTTTTTGTCTTTTTAGCTTTAGATTTAGCTGAGAGTGTGAAAATAAAAAGAAATGGCAAGAAGAAAAA]
[+] EMBL BI946495 [TTTTAATTATAATGAATTATAGCCAATAGTCAGATTTAAATCAAATCTGCGACATTCATTGGCATTTCTTCGATACTAGTATTATAGAATTGTTCAATATCTTTCAAGGTTCGTTTATCGTCGTCAGTTACCAAGTTAATTGCCACTCCCTTGCGACCGAAACGACCACCTCGACCGATTCTGTGAATATAATTTTCACGATTGGAAGGTAAATCATAATTGATGACAAGTGAAACCTGTTGAACATCAATACCACGTGCTCTCGTGCCGCTCGTGCCGGTTTCGCCTTCGTCGTGCCACAGTCAGCGCGGACACAGCCTGCGTTTCCTTTCACCTGCGTGAATCATGAAGTCGATCGTTTTACTAGCGTTGGTCGTCGCGTGCGCCCTCGTCTTGGCCGAGACGGCGAGCACCTCTTCCTC GACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGA TTTGCG CCCACGATCCGAACGAC GCCACGTCCAAACCGAGAACGTTCGGAACCGAGTGCGCCCTCAACGTTCACAACTGCG ]
[+] EMBL BI510853 [ CACCTGCGTGAATCATGAAGTCGATCGTTTTACTAGCGTTGGTCGTCGCGTGCGCCCTCGTCTTGGCCGAGACGGCGAGCACCTCTTCCTC GACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGA TTTGCG CCCATGATCCGAACGAC GCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCGAGATGGGGACGAAATTGGTGATGAAGAGCAAAGGCGAGTGTCCAGGATCCGGCGGCGTGAGGCTCTCTTGAACGGCAACCTCGAAGGATCGCGTCACCTCG CATCATTCTTCACGATCGAGGGAAAAACAATGCTTGAGCAATTATCTTATGTATTAACGACGGGCTTGTGATTTTTTTGTCTTTTTAGCT ]
[+] EMBL BI513875 [ CCTGCGTGAATCATGAAGTCGATCGTTTTACTAGCGTTGGTCGTCGCGTGCGCCCTCGTCTTGGCCGAGACGGCGAGCACCTCTTCCTC GACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGA TTTGCG CCCATGATCCGAACGAC GCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCGAGATGGGGACGAAATTGGTGATGAAGAGCAAAGGCGAGTGTCCAGGATCCGGCGGCGTGAGGCTCTCTTGAACGGCAACCTCGAAGGATCGCGTCACCTCG CATCATTCTTCACGATCGAGGGAAAAACAATGCTTGAGCAATTATCTTATGT ]
[+] EMBL BI513959 [ CCTGCGTGAATCATGAAGTCGATCGTTTTACTAGCGTTGGTCGTCGCGTGCGCCCTCGTCTTGGCCGAGACGGCGAGCACCTCTTCCTC GACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGA TTTGCG CCCATGATCCGAACGAC GCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCGAGATGGGGACGAAATTGGTGATGAAGAGCAAAGGCGAGTGTCCAGGATCCGGCGGCGTGAGGCTCTC ]
[+] EMBL BI516684 [ CGTCTTGGCCGAGACGGCGAGCACCTCTTCCTC GACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGA TTTGCG CCCATGATCCGAACGAC GCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCGAGATGGGGACGAAATTGGTGATGAAGAGCAAAGGCGAGTGTCCAGGATCCGGCGGCGTGAGGCTCT ]
[-] EMBL BI946494 [ CTTGGCCGAGACGGCGAGCACCTCTTCCTCTGACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATACGGCACGGCGTACGAACCGATTTTGCGCCCCACGATCCGAACGACGGCCACGTCCAAACCGAGAACGTTCGGAACCGAGTGCGCCCTCAACGTTCACAACTGCGAGATGGGGACGAAATTGGTGATGAAGAGCAAAGGCGAGTGTCCAGGATCCGGCGGCGTGAGACTTTCTTGAACGGCAACCTCGAAGGATCGCCTTACCTCGCCATCATTCTTCACGATCGAGGGAAAAACAATGCTTGAGCAATTATCTTACGTATTAACGACGGGCTTGTGATTTTTTTGTCTTTTTAGCTTTAGATTTAGCTGAGAGTGTGAAAATAAAAAGAAATGGCAAGAAGAAAAA]
[+] EMBL BI511849 [ TGGCCGAGACGGCGAGCACCTCTTCCTC GACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGA TTTGCG CCCATGATCCGAACGAC GCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCGAGATGGGGACGAAATTGGTGATGANNNGCAAAGGCGAGTGTCCAGGATCCGGCGGCGTGAGGCTCTCTTGAACGGCAACCTNNAAGGATCGCGTCACCTCG CATCATTCTTCACGATCGAGGGAAAAACAATGCTTGAGCAATTATC ]
[+] EMBL BI512190 [ CCTC GACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGA TTTGCG CCCATGATCCGAACGAC GCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCGAGATGGGGACGAAATTGGTGATGAAGAGCAAAGGCGAGTGTCCAGGATCCGGCGGCGTGAGGCTCTCTTGAACGGCAACCTCGAAGGATCGCGTCACCTCG CATCATTCTTCACGATCGAG ]
[+] EMBL BI511804 [ C GACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGA TTTGCG CCCATGATCCGAACGAC GCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCGAGATGGGGACGAAATTGGTGATGAAGAGCAAAGGCGAGTGTCCAGGATCCGGCGGCGTGAGGCTCTCTTGAACGGCAACCTCGAAGGATCGCGTCACCTCG CATCATTCTTCACGATCGAGGGAAAAACAATGCTTGAGCAATTATCTTATGTATTAACGACGGGCTTGTGATTTTTTTGTCTTTTTAGCTTTAGATTTAGCTGAGAGTGTGAAAATA ]
consensusID : consensus_32#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence
[GTCCGAAATAATTCATCGGGTAATTCTCTCAGTCGATTCTCTTCCAAACCAAGATACTTGAGACTCGTCAAGTCTTTAAATAGGTCGACAGGAGAGGTCGAGCAATACTAGCAACGTTGTGCTCAAGAAGAGGCTCTCTGGTAGATTTCGCAACTTATTCGAAGACGCATCTCTGCATCGCATCAAGGAGAAGATACATTTAATATTAGAAAAAGCGTTGGTCGTCGCGTGCGCCCTCGTCTTGGCCGAGACGGCGAGCACCTCTTCCTCGACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGATTTGCGCCCATGATCCGAACGACGCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCGAGATGGGGACG]
[+] EMBL BI514210 [GTCCGAAATAATTCATCGGGTAATTCTCTCAGTCGATTCTCTTCCAAACCAAGATACTTGAGACTCGTCAAGTCTTTAAATAGGTCGACAGGAGAGGTCGAGCAATACTAGCAACGTTGTGCTCAAGAAGAGGCTCTCTGGTAGATTTCGCAACTTATTCGAAGACGCATCTCTGCATCGCATCAAGGAGAAGATACATTTAATATTAGAAAAAGCGTTGGTCGTCGCGTGCGCCCTCGTCTTGGCCGAGACGGCGAGCACCTCTTCCTCGACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGATTTGCGCCCATGATCCGAACGACGCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCGAGATGGGGACG]
consensusID : consensus_32#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence
[GTTCAATATCTTTCAAGGTTCGTTTATCGTCGTCAGTTACCAAGTTAATTGCCACTCCCTTGCGACCGAAACGACCACCTCGACCGATTCTGTGAATATAATTTTCACGATTGGAAGGTAAATCATAATTGATGACAAGTGAAACCTGTTGAACATCAATACCACGTGCTAAAAGATCGGTTGTTATGAGAACACGAGATGATCCAGTTCTAAACTGCCTCATAATGAGATCTCGTTCTTTCTGTTCCATATCTCCATGCATAGCAGAGACCGTAAAATCACGAGTGCGCATACTTTCTGTTAACCAATCTACTTTACGCCGCGTGTTACAAAAGATAACTGCTTGAGTGATACTCAATGTATCATATAGGTCACAAAGTGTTTCAAATTTCCATTCTTCACGCTCAACATAGAAAAAAAAA]
[+] EMBL BI505186 [GTTCAATATCTTTCAAGGTTCGTTTATCGTCGTCAGTTACCAAGTTAATTGCCACTCCCTTGCGACCGAAACGACCACCTCGACCGATTCTGTGAATATAATTTTCACGATTGGAAGGTAAATCATAATTGATGACAAGTGAAACCTGTTGAACATCAATACCACGTGCTAAAAGATCGGTTGTTATGAGAACACGAGATGATCCAGTTCTAAACTGCCTCATAATGAGATCTCGTTCTTTCTGTTCCATATCTCCATGCATAGCAGAGACCGTAAAATCACGAGTGCGCATACTTTCTGTTAACCAATCTACTTTACGCCGCGTGTTACAAAAGATAACTGCTTGAGTGATACTCAATGTATCATATAGGTCACAAAGTGTTTCAAATTTCCATTCTTCACGCTCAACATAGAAAAAAAAA]
consensusID : consensus_32#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 239 fasta sequence
[TTTTTTTTTTTTTTCGCCTCGACCGGTGAGTATAGTTTCGCCTTCGTCGTGCCACAGTCAGCGCGGACACAGCCTGCGTTTCCTTTCACCTGCGTGAATCATGAAGTCGATCGTTTTACTAGCGTTGGTCGTCGCGTGCGCCCTCGTCTTGGCCGAGACGGCGAGCACCTCTTCCTCGACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCAAAGGACGTGA]
[+] EMBL BI511691 [TTTTTTTTTTTTTTCGCCTCGACCGGTGAGTATAGTTTCGCCTTCGTCGTGCCACAGTCAGCGCGGACACAGCCTGCGTTTCCTTTCACCTGCGTGAATCATGAAGTCGATCGTTTTACTAGCGTTGGTCGTCGCGTGCGCCCTCGTCTTGGCCGAGACGGCGAGCACCTCTTCCTCGACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCAAAGGACGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_32#1 ------------------------------------------------------------
consensus_32#3 ------------------------------------------------------------
consensus_32#0 TTTTAATTATAATGAATTATAGCCAATAGTCAGATTTAAATCAAATCTGCGACATTCATT 60
consensus_32#2 ------------------------------------------------------------
consensus_32#1 ------------------------------------------------------------
consensus_32#3 ------------------------------------------------------------
consensus_32#0 GGCATTTCTTCGATACTAGTATTATAGAATTGTTCAATATCTTTCAAGGTTCGTTTATCG 120
consensus_32#2 ------------------------------------------------------------
consensus_32#1 -----------------------------------------------GTCCGAAATAATT 13
consensus_32#3 ------------------------------------------------------------
consensus_32#0 TCGTCAGTTACCAAGTTAATTGCCACTCCCTTGCGACCGAAACGACCACCTCGACCGATT 180
consensus_32#2 ------------------------------------------------------------
consensus_32#1 CATCGGGTA--ATTCTCTCAGTCGAT---TCTCTTCCAA--ACCAAGATACTTGAGACTC 66
consensus_32#3 ------------------------------------------------------------
consensus_32#0 CTGTGAATATAATTTTCACGATTGGAAGGTAAATCATAA--TTGATGACAAGTGAAACCT 238
consensus_32#2 -GTTCAATA--TCTTTCAAGGTTCGTTTATCGTCGTCAGTTACCAAGTTAATTGCCACTC 57
consensus_32#1 GTCAAGTCTTTAAAT-AGGTCGACAGGAGAGGTCGA--GCAATACTAGCAACGTTGTGCT 123
consensus_32#3 TTTTTTTTTTTTTTC-GCCTCGACCGGTGAGT------ATAGTTTCGCCTTCGTCGTGCC 53
consensus_32#0 GTTGAACATCAATACCACGTGCTCTCGTGCCGCTCGTGCCGGTTTCGCCTTCGTCGTGCC 298
consensus_32#2 CCTTGCGACCGAAACGACCACCTCGACCGATTCTGT---GAATATAATTTTCACGATTGG 114
* * * * *
consensus_32#1 CAAGAAGAGGCTCTCTGGTAGATTTCGCAACTTATTCGAAGACGCATCTCTGCATCGCAT 183
consensus_32#3 ACAGTCAGCGCG----GACACAGCCTGCGTTTCCTTTCA---------CCTGCGT-GAAT 99
consensus_32#0 ACAGTCAGCGCG----GACACAGCCTGCGTTTCCTTTCA---------CCTGCGT-GAAT 344
consensus_32#2 AAGGTAAATCATAATTGATGACAAGTGAAACCTGTTGAA-----CATCAATACCACGTGC 169
* * * ** * * * *
consensus_32#1 CAAGGAGAAGATACATTTAATATTAGAAAAAGCGTTGGTCGTCGCGTGCGCCCTCGTCTT 243
consensus_32#3 CATGAAGTCGATCGTTTTACTA---------GCGTTGGTCGTCGCGTGCGCCCTCGTCTT 150
consensus_32#0 CATGAAGTCGATCGTTTTACTA---------GCGTTGGTCGTCGCGTGCGCCCTCGTCTT 395
consensus_32#2 TAAAAGATCGGTTGTTATGAGA-------ACACGA-GATGATCCAGTTCTAAACTGCCTC 221
* * * * * * ** * * ** ** * * **
consensus_32#1 GGCCGAGACGGCGAGCACCTCTTCCTCGACGAAACCGGTCAAAGAGCCGAAGG-AGATCA 302
consensus_32#3 GGCCGAGACGGCGAGCACCTCTTCCTCGACGAAACCGGTCAAAGAGCCGAAGG-AGATCA 209
consensus_32#0 GGCCGAGACGGCGAGCACCTCTTCCTCGACGAAACCGGTCAAAGAGCCGAAGG-AGATCA 454
consensus_32#2 A-TAATGAGATCTCGTTCTTTCTGTTCCATATCTCCATGCATAGCAGAGACCGTAAAATC 280
** * * * * * ** * ** ** ** ** * * *
consensus_32#1 AGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGA 362
consensus_32#3 AGGAGGCCGCGACGGCTTCAAAGGACGTGA------------------------------ 239
consensus_32#0 AGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGA 514
consensus_32#2 ACGAGTGCGC-ATACTTTCTGTTAACCAATCTACTTTACGCCGCGTGTTACAAAAGATAA 339
* *** *** * *** **
consensus_32#1 AGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGATTTGCGCCCATGATCCGAACG 422
consensus_32#3 ------------------------------------------------------------
consensus_32#0 AGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGATTTGCGCCCATGATCCGAACG 574
consensus_32#2 CTGCTTGAGTG---ATACTCAATGTATCATATAGGTCACAAAGTGTTTCAAATTTCCATT 396
consensus_32#1 ACGCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCG 482
consensus_32#3 ------------------------------------------------------------
consensus_32#0 ACGCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCG 634
consensus_32#2 -CTTCACGCTCAACATAGAAAAAAAAA--------------------------------- 422
consensus_32#1 AGATGGGGACG------------------------------------------------- 493
consensus_32#3 ------------------------------------------------------------
consensus_32#0 AGATGGGGACGAAATTGGTGATGAAGAGCAAAGGCGAGTGTCCAGGATCCGGCGGCGTGA 694
consensus_32#2 ------------------------------------------------------------
consensus_32#1 ------------------------------------------------------------
consensus_32#3 ------------------------------------------------------------
consensus_32#0 GGCTCTCTTGAACGGCAACCTCGAAGGATCGCGTCACCTCGCATCATTCTTCACGATCGA 754
consensus_32#2 ------------------------------------------------------------
consensus_32#1 ------------------------------------------------------------
consensus_32#3 ------------------------------------------------------------
consensus_32#0 GGGAAAAACAATGCTTGAGCAATTATCTTATGTATTAACGACGGGCTTGTGATTTTTTTG 814
consensus_32#2 ------------------------------------------------------------
consensus_32#1 ------------------------------------------------------------
consensus_32#3 ------------------------------------------------------------
consensus_32#0 TCTTTTTAGCTTTAGATTTAGCTGAGAGTGTGAAAATAAAAAGAAATGGCAAGAAGAAAA 874
consensus_32#2 ------------------------------------------------------------
consensus_32#1 -
consensus_32#3 -
consensus_32#0 A 875
consensus_32#2 -
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |