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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_334#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence
[TTTTTTTTTTTTTAATTTAAAAATTAACTTTATTTACAAATTATTTACAAAATACTAATTTACATTAATTATTTAAAAATATTAATTTAAATATACTAATTTTTTTAATAAATCAATCGATTGCACAGCCTTGGAAACACGCGCAAAAGATGATTTCGTGGCTTGTTGGACAAGCAGTCTGGGCTTGGGCCAAAGCTGGAATTTGGGAATCCGAGTACGCATATGCTTATCCAAACGAGGATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTTTTGATCAATCGAACAAGACCGGAAGCTTGTGATCAAGAGGTAAATATTATGATATATCAACTACCATTATATTCTTTTCAATTTTTTCAATTCAAATTATATTATATCTTTCTTTTAATTCTCTTAGGTATATTTGTATTTACGAAATGCATCTTTCGACATGTTCGACATAGATTCAGATGTAAAGAAAGATTGTNTGAGGCCATATATCGTTCAACCGGTAAATTACA]
[+] EMBL BI504332 [TTTTTTTTTTTTTAATTTAAAAATTAACTTTATTTACAAATTATTTACAAAATACTAATTTACATTAATTATTTAAAAATATTAATTTAAATATACTAATTTTTTTAATAAATCAATCGATTGCACAGCCTTGGAAACACGCGCAAAAGATGATTTCGTGGCTTGTTGGACAAGCAGTCTGGGCTTGGGCCAAAGCTGGAATTTGGGAATCCGAGTACGCATATGCTTATCCAAACGAGGATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTTTTGATCAATCGAACAAGACCGGAAGCTTGTGATCAAGAGGTAAATATTATGATATATCAACTACCATTATATTCTTTTCAATTTTTTCAATTCAAATTATATTATATCTTTCTTTTAATTCTCTTAGGTATATTTGTATTTACGAAATGCATCTTTCGACATGTTCGACATAGATTCAGATGTAAAGAAAGATTGTNTGAGGCCATATATCGTTCAACCGGTAAATTACA]
consensusID : consensus_334#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 547 fasta sequence
[TTTTTTTTTTGATACTGAAAGAGCAAAAGCGCCAGTGGCGGTTGTAGGTTTCCAATTTCAACACACCGCTCTTCAGGGTCTCTTCCAGAACATCACGTTCAGTTGCGAGGGTTCAGGGAAATGCCACACACATTGTGGTGCAGATAATTGGGCTTGCTATTTGATTGATAATAATGGATACGTAATCGCAGCCAAAGATAAATCTGACGCAGGAAAATTCTTCGGTGAACTGAGAGGACCAATCATGTCTAGTTTAGTAAAAGAAGGTGTTTTCGAAAGAATCAGAATATTCGATTATCAAGCAGTTTGTTTCAAGAGTACACAAACTAGTAATGATGGAAGTATTTTATTGGCGCCTTGGAAACACGCGCAAAAGATGATTTCGTGGCTTATTGGACAAGCAGTCTGGGCTTGGGCCAAAGCTGGAATTTGGGAATCCGAGTACGCATATGCTTATCCAAACGAGGATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTT]
[-] EMBL BI506780 [TTTTTTTTTTGATACTGAAAGAGCAAAAGCGCCAGTGGCGGTTGTAGGTTTCCAATTTCAACACACCGCTCTTCAGGGTCTCTTCCAGAACATCACGTTCAGTTGCGAGGGTTCAGGGAAATGCCACACACATTGTGGTGCAGATAATTGGGCTTGCTATTTGATTGATAATAATGGATACGTAATCGCAGCCAAAGATAAATCTGATGCAGGAAAATTCTTCGGTGAACTGAGAGGACCAATCATGTCT ]
[+] EMBL BI504645 [ ACACACCGCTCTTCAGGGTCTCTTCCAGAACATCACGTTCAGTTGCGAGGGTTCAGGGAAATGCCACACACATTGTGGTGCAGATAATTGGGCTTGCTATTTGATTGATAATAATGGATACGTAATCGCAGCCAAAGATAAATCTGACGCAGGAAAATTCTTCGGTGAACTGAGAGGACCAATCATGTCTAGTTTAGTAAAAGAAGGTGTTTTCGAAAGAATCAGAATATTCGATTATCAAGCAGTTTGTTTCAAGAGTACACAAACTAGTAATGATGGAAGTATTTTATTGGCGCCTTGGAAACACGCGCAAAAGATGATTTCGTGGCTTATTGGACAAGCAGTCTGGGCTTGGGCCAAAGCTGGAATTTGGGAATCCGAGTACGCATATGCTTATCCAAACGAGGATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTT]
consensusID : consensus_334#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 514 fasta sequence
[AACGAGGATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTTTTGATCAATCGAACAAGACCGGAAGCTTGTGATCAAGAGGTATATTTGTATTTACGAAATGCATCTTTCGACATGTTCGACATAGATTCAGATGTAAAGAAAGATTGTATGAGGCCATATATCGTTCAANCGGTAAATTACAGCAATATGCTTCTTCTTGTCGTTAACACAGCCTGCACAGAGACAACTATGCCTCCTTTGAGCGTCATTCCACAAGAAATAATATATGAGAATAACTCGCTAGTATGTCAGAAAGCACTCATTTCCTTAAAACGGAAGAGACCTCAATCGTGTATTCGCAGTCATTCGAGGGAGAGCGAAATTAAAGATCTTTGCGGTTTGGCTTCGAATGTGACACCAAATATCTACCTCTTTTTTCTTTTGTCTATAACCTGTTCTCTGATTCAACGAATTGACCTTGGTCAAC]
[+] EMBL BI503563 [AACGAGGATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTTTTGATCAATCGAACAAGACCGGAAGCTTGTGATCAAGAGGTATATTTGTATTTACGAAATGCATCTTTCGACATGTTCGATATAGATTCAGATGTAAAGAAAGATTGTATGAGGCCATATATCATTCAACCGGTAAATTACAGCAATATGCTTCTTCTTGTCGTTAACACAGCCTGCACAGAGACAACTATGCCTCCTTTGAGCGTCATTCCACAAGAAATAATATATGAGAATAACTCGCTAGTATGTCAGAAAGCACTCATTTCCTTAAAACGGAAGAGACCTCAATCGTGTATTCGCAGTCATTCGAGGGAGAGCGAAATTAAAGATCTTTGCGGTTTGGCTTCGAATGTGACACCAAATATCTACCTCTTTTTTCTTTTGTCTATAACCTGTTCTCTGATTCAACGAATTGACCTTGGTCAAC]
[-] EMBL BI507318 [ CATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTTTTGATCAATCGAACAAGACCGGAAGCTTGTGATCAAGAGGTATATTTGTATTTACGAAATGCATCTTTCGACATGTTCGACATAGATTCAGATGTAAAGAAAGATTGTATGAGGCCATATATCGTTCAANCGGTAAATTACAGCAATATGCTTCTTCTTGTCGTTAACACAGCCTGCACAGAGACAACTATGCCTCCTTTGAGCGTCATTCCACAAGAAATAATATATGAGAATAACTCGCTAGTATGTCAGAAAGCACTCATTTCCTTAAAACGGAAGAGACCTCAATCGTGTATTCGCAGTCATTCGAGGGAGAGCGAAATTAAAGATCTTTGCGGTTTGGCTTCGAATGTGACACCAAATATCTACCTCTTTTTTCTTTTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_334#0 TTTTTTTTTTTTTAATTTAAAAATTAACTTTATTTACAAATTATTTACAAAATACTAATT 60
consensus_334#2 ---------------AACGAGGATGAAGAT-ATCCATGAAGAATAT-CAAGATAATGATC 43
consensus_334#1 -TTTTTTTTTTGATACTGAAAGAGCAAAAGCGCCAGTGGCGGTTGT--AGGTTTCCAATT 57
* * ** * * * * **
consensus_334#0 TACATTAATTATTTAAAAATATTAATTTAAATATACTAATTTTTTTAATAAATCAATCGA 120
consensus_334#2 AAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTTTTGATCAATCGAACAA 103
consensus_334#1 TCAACACACCGCTCTTCA----GGGTCTCTTC---CAGAACATCACGTTCAGTTGCGAGG 110
* * * * * * * * * *
consensus_334#0 TTGCACAGCCTTGGAA-ACAC---GCGCAAAAGATGATTTCGTGGCTTG--TTGGACAAG 174
consensus_334#2 GACCGGAAGCTTGTGA-TCAA---GAGGTATATTTGTATTTACGAAATGCATCTTTCGAC 159
consensus_334#1 GTTCAGGGAAATGCCACACACATTGTGGTGCAGATAATTGGGCTTGCTATTTGATTGATA 170
* ** * ** * * * * * * *
consensus_334#0 CAGTCTGGGCTTGGGCCAAAGCTGGAATTTGGGAATCCGAGTACGCATAT-GCTTATCCA 233
consensus_334#2 ATGTTCGACATAGATTCAGATGTAAAGAAAGATTGTATGAGGCCATATATCGTTCAANCG 219
consensus_334#1 ATAATGGATACGTAATCGCAGCCAAAGATAAATCTGACGCAGGAAAATTC--TTCGGTGA 228
* * * * * ** *
consensus_334#0 AACGAGGATGAAGAT-ATCCATGAAG--AATATCAAGATAA--TGATCAAGAGAAACCAC 288
consensus_334#2 GTAAATTACAGCAAT-ATGCTTCTTCTTGTCGTTAACACAGCCTGCACAGAGACAACTAT 278
consensus_334#1 ACTGAGAGGACCAATCATGTCTAGTTTAGTAAAAGAAGGTGTTTTCGAAAGAATCAGAAT 288
* ** ** * * * * * *
consensus_334#0 CAATTACTGAGAAATTATTCGATCAAAAAGTTTTGATCAATCGAACAAGACCGGAAGCTT 348
consensus_334#2 GCCTCCTTTGAGCGTCATTCCACAAGAAA----TAATATATGAGAATAACTCGCTAGTAT 334
consensus_334#1 ATTCGATTATCAAGCAGTTTGTTTCAAGAG---TACACAAACTAGTAATGATGGAAGTAT 345
* ** * * * * * * ** *
consensus_334#0 GTGATCAAGAGGTAAATATTATGATATATCAACTACCATTATATTCTTTTC----AATTT 404
consensus_334#2 GTCAGAAAGCACTCATTTCCTTAAAACGGAAGAGACCTCAATCGTGTATTCGC--AGTCA 392
consensus_334#1 TTTATTGGCGCCTTGGAAACACG-CGCAAAAGATGATTTCGTGGCTTATTGGACAAGCAG 404
* * * * * * ** *
consensus_334#0 TTTCAATTCAAATTATATTATATCTTTCTTTTAATTCTCTTAGG-TATATTTGTATTTAC 463
consensus_334#2 TTCGAGGGAGAGCGAAATTAAAGATCTTTGCGGTTTGGCTTCGAATGTGACACCAAATAT 452
consensus_334#1 TCTGGGCTTGGGCCAAAGC-TGGAATTTGGGAATCCGAGTACGCATATGCTTATCCAAAC 463
* * * * * * * * *
consensus_334#0 GAAATGCATCTTTCGAC-ATGTTCGACATAGATTCAGATGTAAAGAAAGATTGTNTGAGG 522
consensus_334#2 CTACCTCTTTTTTCTTTTGTCTATAACCTGTTCTCTGATTCAACGAA---TTGACCTTGG 509
consensus_334#1 GAGGATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAAC-CACCAATTAC 522
* * *** * ***
consensus_334#0 CCATATATCGTTCAACCGGTAAATTACA 550
consensus_334#2 TCAAC----------------------- 514
consensus_334#1 TGAGAAATTATTCGATCAAAAAGTT--- 547
*
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |