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Apis mellifera
cluster # 336 cluster # 336       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_336#0 length = 785 sequences # 3  
consensus_336#1 length = 549 sequences # 2  

consensusID : consensus_336#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 785
fasta sequence
                              [TAAGACAACGTCAAAAGAAAGCCCATATAATGGAAATTCAATTAAATGGTGGAACTATTGAGCAGAAAGTTCAATGGGCTCGTGAACATTTAGAAAAACCAGTACCTGTCAGTAATGTTTTTGCTCCAGATGAAATGATAGATGTAATTGGTGTCACAAAAGGAAAAGGATATAAAGGTGTTACATCGCGTTGGCATACAAAAAAATTGCCACGCAAAACACATAAAGGTCTAAGAAAAGTCGCTTGTATTGGAGCTTGGCATCCTAGCCGTGTGTCTTTTACTGTTGCACGTGCTGGTCAAAAGGGATATCATCATCGTACAGAAATGAATAAAAAAATTTATAGAATTGGACAAGGAATTCATACTAAAGATGGCAAGATCGTAAAGAATAATGCTTCTACAGAATACGATCTTACCGAGAAAACTATAACTCCTATGGGAGGTTTTCCTCATTATGGTGAAGTAAATAATGACTTCATTATGATCAAAGGTTGCTGTATGGGTCCGAAAAAACGTGTAATTACATTACGTAAGTCCTTATTAGTTCATACTAAACGATCAGCATTGGAGAAGATCAATCTTAAATTTATCGATACAAGTTCCAAATTTGGACATGGTCGTTTTCAAACTGCTGCTGATAAGNCTTCATTTATGGGTCAACTTAAAAAAGATCGTATGCGTGAGGAACAACAAGCACAAGCTACTACCTCAGCACCATCGGCCGCAAATGCTTAATAAAAACATATACATATTAAAATATGTATAAAATGAAAAATAAAAAAT]

[+] EMBL BI503462             [TAAGACAACGTCAAAAGAAAGCCCATATAATGGAAATTCAATTAAATGGTGGAACTATTGAGCAGAAAGTTCAATGGGCTCGTGAACATTTAGAAAAACCAGTACCTGTCAGTAATGTTTTTGCTCCAGATGAAATGATAGATGTAATTGGTGTCACAAAAGGAAAAGGATATAAAGGTGTTACATCGCGTTGGCATACAAAAAAATTGCCACGCAAAACACATAAAGGTCTAAGAAAAGTCGCTTGTATTGGAGCTTGGCATCCTAGCCGTGTGTCTTTTACTGTTGCACGTGCTGGTCAAAAGGGATATCATCATCGTACAGAAATGAATAAAAAAATTTATAGAATTGGACAAGGAATTCATACTAAAGATGGCAAGATCGTAAAGAATAATGCTTCTACAGAATACGATCTTACCGAGAAAACTATAACTCCTATGGGAGGTTTTCCTCATTATGGTGAAGTAAATAATGACTTCATTATGATCAAAGGTTGCTGTATGGGTCCGAAAAAACGTGTAATTACATTACGTAAGTCCTTATTAGTTCATACTAAA                                                                                                                                                                                                                                    ]
[+] EMBL BI514151             [                                                                                                                                                                                                                                                          TGGAGCTTGGCATCCTAGCCGTGTGTCTTTTACTGTTGCACGTGCTGGTCAAAAGGGATATCATCATCGTACAGAAATGAATAAAAAAATTTATAGAATTGGACAAGGAATTCATACTAAAGATGGCAAGATCGTAAAGAATAATGCTTCTACAGAATACGATCTTACCGAGAAAACTATAACTCCTATGGGAGGTTTTCCTCATTATGGTGAAGTAAATAATGACTTCATTATGATCAAAGGTTGCTGTATGGGTCCGAAAAAACGTGTAATTACATTACGTAAGTCCTTATTAGTTCATACTAAACGATCAGCATTGGAGAAGATCAATCTTAAATTTATCGATACAAGTTCCAAATTTGGACATGGTCGTTTTCAAACTGCTGCTGATAAGNCTTCATTTAT                                                                                                                                  ]
[+] EMBL BI510985             [                                                                                                                                                                                                                                                                                GTGTCTTTTACTGTTGCACGTGCTGGTCAAAAGGGATATCATCATCGTACAGAAATGAATAAAAAAATTTATAGAATTGGACAAGGAATTCATACTAAAGATGGCAAGATCGTAAAGAATAATGCTTCTACAGAATACGATCTTACCGAGAAAACTATAACTCCTATGGGAGGTTTTCCTCATTATGGTGAAGTAAATAATGACTTCATTATGATCAAAGGTTGCTGTATGGGTCCGAAAAAACGTGTAATTACATTACGTAAGTCCTTATTAGTTCATACTAAACGATCAGCATTGGAGAAGATCAATCTTAAATTTATCGATACAAGTTCCAAATTTGGACATGGTCGTTTTCAAACTGCTGCTGATAAGACTTCATTTATGGGTCAACTTAAAAAAGATCGTATGCGTGAGGAACAACAAGCACAAGCTACTACCTCAGCACCATCGGCCGCAAATGCTTAATAAAAACATATACATATTAAAATATGTATAAAATGAAAAATAAAAAAT]


>consensus_336#0 TAAGACAACGTCAAAAGAAAGCCCATATAATGGAAATTCAATTAAATGGTGGAACTATTG AGCAGAAAGTTCAATGGGCTCGTGAACATTTAGAAAAACCAGTACCTGTCAGTAATGTTT TTGCTCCAGATGAAATGATAGATGTAATTGGTGTCACAAAAGGAAAAGGATATAAAGGTG TTACATCGCGTTGGCATACAAAAAAATTGCCACGCAAAACACATAAAGGTCTAAGAAAAG TCGCTTGTATTGGAGCTTGGCATCCTAGCCGTGTGTCTTTTACTGTTGCACGTGCTGGTC AAAAGGGATATCATCATCGTACAGAAATGAATAAAAAAATTTATAGAATTGGACAAGGAA TTCATACTAAAGATGGCAAGATCGTAAAGAATAATGCTTCTACAGAATACGATCTTACCG AGAAAACTATAACTCCTATGGGAGGTTTTCCTCATTATGGTGAAGTAAATAATGACTTCA TTATGATCAAAGGTTGCTGTATGGGTCCGAAAAAACGTGTAATTACATTACGTAAGTCCT TATTAGTTCATACTAAACGATCAGCATTGGAGAAGATCAATCTTAAATTTATCGATACAA GTTCCAAATTTGGACATGGTCGTTTTCAAACTGCTGCTGATAAGNCTTCATTTATGGGTC AACTTAAAAAAGATCGTATGCGTGAGGAACAACAAGCACAAGCTACTACCTCAGCACCAT CGGCCGCAAATGCTTAATAAAAACATATACATATTAAAATATGTATAAAATGAAAAATAA AAAAT



consensusID : consensus_336#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 549
fasta sequence
                              [AAGCTTTTCCTAAAGATGATCCAAGCAAACCTGTACATTTAACGGCTTTTATCGGTTATAAAGCCGGTATGACTCACGTAGTTAGGGAAGCTGATCGTCCAGGATCAAAGGTGAATAAGAAAGAAATTGTAGAAGCAGTTACCATTTTAGAAACACCACCTATGATTGTAGTTGGTGTAGTTGGTTATATTGAAACTCCGCATGGTTTACGTGCTCTTACTACAGTATGGGCAGAACATTTATCTGAAGATTGTCGAAGAAGATTTTATAAAAACTGGTACAAAAGCAAAAAGAAGGCATTTACAAAAGCTTCCAAAAAATGGCAAGATGATCTTGGTCGTAAATCTATAGAAAACGATTTTAAAAAAATCATTAAATATTGTAAAGTTGTACGAATTATCGCTCATACGCAGATGAAATTATTAAGACAACGTCAAAAGAAAGCCCATATAATGGAAATTCAATTAAATGGTGGAACTATTGAGCTGAAAGTTCAATGGGCTCGTGAACATTTAGAAAAACCAGTACCTGTCAGTAATGTTTTTGCTC]

[+] EMBL BI505312             [AAGCTTTTCCTAAAGATGATCCAAGCAAACCTGTACATTTAACGGCTTTTATCGGTTATAAAGCCGGTATGACTCACGTAGTTAGGGAAGCTGATCGTCCAGGATCAAAGGTGAATAAGAAAGAAATTGTAGAAGCAGTTACCATTTTAGAAACACCACCTATGATTGTAGTTGGTGTAGTTGGTTATATTGAAACTCCGCATGGTTTACGTGCTCTTACTACAGTATGGGCAGAACATTTATCTGAAGA                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BI510465             [                        GCAAACCTGTACATTTAACGGCTTTTATCGGTTATAAAGCCGGTATGACTCACGTAGTTAGGGAAGCTGATCGTCCAGGATCAAAGGTGAATAAGAAAGAAATTGTAGAAGCAGTTACCATTTTAGAAACACCACCTATGATTGTAGTTGGTGTAGTTGGTTATATTGAAACTCCGCATGGTTTACGTGCTCTTACTACAGTATGGGCAGAACATTTATCTGAAGATTGTCGAAGAAGATTTTATAAAAACTGGTACAAAAGCAAAAAGAAGGCATTTACAAAAGCTTCCAAAAAATGGCAAGATGATCTTGGTCGTAAATCTATAGAAAACGATTTTAAAAAAATCATTAAATATTGTAAAGTTGTACGAATTATCGCTCATACGCAGATGAAATTATTAAGACAACGTCAAAAGAAAGCCCATATAATGGAAATTCAATTAAATGGTGGAACTATTGAGCTGAAAGTTCAATGGGCTCGTGAACATTTAGAAAAACCAGTACCTGTCAGTAATGTTTTTGCTC]


>consensus_336#1 AAGCTTTTCCTAAAGATGATCCAAGCAAACCTGTACATTTAACGGCTTTTATCGGTTATA AAGCCGGTATGACTCACGTAGTTAGGGAAGCTGATCGTCCAGGATCAAAGGTGAATAAGA AAGAAATTGTAGAAGCAGTTACCATTTTAGAAACACCACCTATGATTGTAGTTGGTGTAG TTGGTTATATTGAAACTCCGCATGGTTTACGTGCTCTTACTACAGTATGGGCAGAACATT TATCTGAAGATTGTCGAAGAAGATTTTATAAAAACTGGTACAAAAGCAAAAAGAAGGCAT TTACAAAAGCTTCCAAAAAATGGCAAGATGATCTTGGTCGTAAATCTATAGAAAACGATT TTAAAAAAATCATTAAATATTGTAAAGTTGTACGAATTATCGCTCATACGCAGATGAAAT TATTAAGACAACGTCAAAAGAAAGCCCATATAATGGAAATTCAATTAAATGGTGGAACTA TTGAGCTGAAAGTTCAATGGGCTCGTGAACATTTAGAAAAACCAGTACCTGTCAGTAATG TTTTTGCTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_336#0      TAAGACAACGTCAAAAGAAAGCCCATATAATGGAAATTCAATTAAATGGTGGAACTATTG 60
consensus_336#1      ---------------------------------------------------AAGCTTTTC 9
                                                                         * ** ** 

consensus_336#0      AGCAGAAAGTTCAATGGGCTCGTGAACATTTAGAAAAACCAGTACCTGTCAGTAATGTTT 120
consensus_336#1      CTAAAGATGATCCAAGCAAACCTGTACATTTAA------CGGCTTTTATCGGTTATAAAG 63
                        *  * * ** * *    * ** *******       * *    * ** ** **    

consensus_336#0      TTGCTCCAGATGAAATGATAGATGTAATTGGTGTCACAAAAGGAAAAGGATATAAAGGTG 180
consensus_336#1      CCGGTATGACTCACGTAGTTAGGGAAGCTGATCGTCCAGGATCAAAGGTGAATAAGAAAG 123
                       * *     * *  *  *    * *  ** *    **  *  *** *   ****    *

consensus_336#0      TTACATCGCGTTGGCATACAAAAAAATTGCCACGCAAAACACATAAAGGTC-TAAGAAAA 239
consensus_336#1      --AAATTGTAGAAGCAGTTACCA--TTTTAGAAACACCACCTATGATTGTAGTTGGTGTA 179
                       * ** *     ***   *  *   **   *  **  **  ** *  **  *  *   *

consensus_336#0      GTCGCTTGTATTGGAGCTTGGCATCCTAGCCGTGTGTCTTTTACTGTTGCACGTGCTGGT 299
consensus_336#1      GTTGGTTATATTGAAACTCCGCATGGTTTACGTG---CTCTTACTACAGTATGGGCAGAA 236
                     ** * ** ***** * **  ****  *   ****   ** *****   * * * ** *  

consensus_336#0      CAAAAGGGATATCATCATCGTACAGAAATGAATAAAAAAATTTATAGAATTGGACA--AG 357
consensus_336#1      CATTTATCTGAAGATTGTCGAAGAAGATTTTATAAAAACTGGTACAAAAGCAAAAAGAAG 296
                     **        *  **  *** * *  * *  *******    ** * **    * *  **

consensus_336#0      GAATTCATA--------CTAAAGATGGCAAGATCGTAAAGAATAATGCTTCTACAGAATA 409
consensus_336#1      GCATTTACAAAAGCTTCCAAAAAATGGCAAGATGATCTTGG-TCGTAAATCTATAGAAAA 355
                     * *** * *        * *** **********  *   *  *  *   **** **** *

consensus_336#0      CGATCTTACCGAGAAAACTATAACTCCTATGGGAGGTTTTCCTCATTATGGTGAAGTAAA 469
consensus_336#1      CGATTTTA---AAAAAATCATTAAATAT-TGTAAAGTTGTACGAATTATCGCTCATACGC 411
                     **** ***   * ****  ** *    * **  * *** * *  ***** *   *     

consensus_336#0      TAATGACTTCATTATGATCAAAGGTTGCTGTATGGGTCCGAAAA--AACGTGTAATTACA 527
consensus_336#1      AGATGAAATTATTAAGAC--AACGTCAAAAGAAAGCCCATATAATGGAAATTCAATTAAA 469
                       ****  * **** **   ** **      *  *  *  * **   *  *  ***** *

consensus_336#0      TTACGTAAGTCCTTATT----AGTTCATACTAAACGATCAGCATTGGAGAAGATCAATCT 583
consensus_336#1      TGGTGGAACTATTGAGCTGAAAGTTCA-ATGGGCTCGTGAACATTTAGAAAAACCAGT-- 526
                     *   * ** *  * *      ****** *        * * ****    ** * ** *  

consensus_336#0      TAAATTTATCGATACAAGTTCCAAATTTGGACATGGTCGTTTTCAAACTGCTGCTGATAA 643
consensus_336#1      ---ACCTGTCAGTA-ATGTTTTTGCTC--------------------------------- 549
                        *  * **  ** * ***     *                                  

consensus_336#0      GNCTTCATTTATGGGTCAACTTAAAAAAGATCGTATGCGTGAGGAACAACAAGCACAAGC 703
consensus_336#1      ------------------------------------------------------------
                                                                                 

consensus_336#0      TACTACCTCAGCACCATCGGCCGCAAATGCTTAATAAAAACATATACATATTAAAATATG 763
consensus_336#1      ------------------------------------------------------------
                                                                                 

consensus_336#0      TATAAAATGAAAAATAAAAAAT 785
consensus_336#1      ----------------------
                                           




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)