These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1131 fasta sequence [AAAATATTTTTCGTTCCATTTAAATAGCAAGATAACTTGAATTAAAATCGATGATGAGGGAAGAGCGAAGACGAAGAAGGATGCTGCGGTAACTGCGAGGCGTCATTATCGTTCCGCGTCTCTCCCTCCCCTTCTCCCCCCCGTGTCACGGAAGCGTTCAGGATGCAAAGTAGCATTTGTACGTATCCTGCGGTGGGACATCGTCAGCTGTTAACTTTTCGAGTTAGCGGAGCAGATAAGGGCCCATGGGCGGTGGCGGAATAGCACTTTGCCTCCGAGTTACACCGCGATAGGCGTAGCGTCAAACTTTCGCTACGCCGCACTGTGAAACCGAATTAGAATCGAAGAGGTCTCCAAGAGCGTTCGATAAAAGTCGATCAGGAGGAGATTCGAATCGTTCTATCTATTCAGTCACTTTCTGGCTCTTTCACAGTGAATACCTACAAGAAAAATGAAAACCATCCTTACGATTATCTTTAGTATTATACTGATTTCGGAGGCCAAAGTTGCTCCGACTAGCACTACCAATTCTCAAGGAACTCCTGATGTTCAACTAAGCGAACTTATAAGCCAGGCTCAAGCAAACATCAACAATTTAGCAAAACAAATTCAGGAACAATGGAATATCCCTGATCAAGACACTATTGTAAAAACTGTCAAAGATCAAAGCGCCAATTTCGTTAACAATATTCAAGATTACATAAAGAATGTTACTGAAGAGGTCAAAACCAAAACTCCCGAATTGGAAAGATCATGGAATGATGTTAAAACCATGCTCAATAAAGTCGTCGATGATATTAGTAGTGGAATTCCAAATGCTCAGCAACAAGTCGCTGAATTACAAAGTAAATTCCAGCAAGGAGTTCAAACTTTACTTAAAGAATCTGACAAAGCTGCGAAATCTCTGAGCCAACATTCTGGAAAAATACAAGAAGACCTTGCAAAGTTCACAAAACAGGCAGTTGATATTGCCGTACAAGCAACGCAGAATCTAAACAATCAACTTCAAACTGCCGCAACTCAAAAAAGTTAAATAACTAGTATTAATATTTCTTATTAAGATTGAAAATATTAATTATATAAAGAAAAATAAAAAAATATAAAAAATTGTTAATATAAAAAAAAAAAAAA] [+] EMBL BI505274 [AAAATATTTTTCGTTCCATTTAAATAGCAAGATAACTTGAATTAAAATCGATGATGAGGGAAGAGCGAAGACGAAGAAGGATGCTGCGGTAACTGCGAGGCGTCATTATCGTTCCGCGTCTCTCCCTCCCCTTCTCCCCCCCGTGTCACGGAAGCGTTCAGGATGCAAAGTAGCATTTGTACGTATCCTGCGGTGGGACATCGTCAGCTGTTAACTTTTCGAGTTAGCGGAGCAGATAAGGGCCCATGGGCGGTGGCGGAATAGCACTTTGCCTCCGAGTTACACCGCGATAGGCGTAGCGTCAAACTTTCGCTACGCCGCACTGTGAAACCGAATTAGAATCGAAGAGGTCTCCAAGAGCGTTCGATAAAAGTCGATCAGGAGGAGATTCGAATCGTTCTATCTATTCAGTCACTTTCTGGCTCTTTCACAGTGAATACCTACAAGAAAAATGAAAACCATCCTTACGATTATCTTTAGTATTATACTGATTTCGGAGGCCAAAGTTGCTCCGACTAGCACTACCAATTCTCAAGGAACTCCTGATGTTCAACTAAGCGAACTTATAAGCCAGACTCAAGCAAACATCAACAATTTAGCAAAACAAATTCAGGAACAATGGA ] [+] EMBL BI504226 [ CTCCGACTAGCACTACCAATTCTCAAGGAACTCCTGATGTTCAACTAAGCGAACTTATAAGCCAGGCTCAAGCAAACATCAACAATTTAGCAAAACAAATTCAGGAACAATGGAATATCCCTGATCAAGACACTATTGTAAAAACTGTCAAAGATCAAAGCGCCAATTTCGTTAACAATATTCAAGATTACATAAAGAATGTTACTGAAGAGGTCAAAACCAAAACTCCCGAATTGGAAAGATCATGGAATGATGTTAAAACCATGCTCAATAAAGTCGTCGATGATATTAGTAGTGGAATTCCAAATGCTCAGCAACAAGTCGCTGAATTACAAAGTAAATTCCAGCAAGGAGTTCAAACTTTACTTAAAGAATCTGACAAAGCTGCGAAATCTCTGAGCCAACATTCTGGAAAAATACAAGAAGACCTTGCAAAGTTCACAAAACAGGCAGTTGATATTGCCGTACAAGCAACGCAGAATCTAAACAATCAACTTCAAACTNNCGCAACTCAAAAAAGTTAAATAACTAGTATTAATATTTCTTATTAAGATTGAAAATATTAATTATATAAAGAAAAATAAAAAAATATAAAAAATTGTTAATATAAAAAAAA ] [+] EMBL BI503366 [ CAAGGAACTCCTGATGTTCAACTAAGCGAACTTATAAGCCAGGCTCAAGCAAACATCAACAATTTAGCAAAACAAATTCAGGAACAATGGAATATCCCTGATCAAGACACTATTGTAAAAACTGTCAAAGATCAAAGCGCCAATTTCGTTAACAATATTCAAGATTACATAAAGAATGTTACTGAAGAGGTCAAAACCAAAACTCCCGAATTGGAAAGATCATGGAATGATGTTAAAACCATGCTCAATAAAGTCGTCGATGATATTAGTAGTGGAATTCCAAATGCTCAGCAACAAGTCGCTGAATTACAAAGTAAATTCCAGCAAGGAGTTCAAACTTTACTTAAAGAATCTGACAAAGCTGCGAAATCTCTGAGCCAACATTCTGGAAAAATACAAGAAGACCTTGCAAAGTTCACAAAACAGGCAGTTGATATTGCCGTACAAGCAACGCAGAATCTAAACAATCAACTTCAAACTGCCGCAACTCAAAAAAGTTAAATAACTAGTATTAATATTTCTTATTAAGATTGAAAATATTAATTATATAAAGAAAAATAAAAAAATATAAAAAATTGTTAATATAAAAAAAAAAAAAA] [+] EMBL BI506404 [ CAAGGAACTCCTGATGTTCAACTAAGCGAACTTATAAGCCAGGCTCAAGCAAACATCAACAATTTAGCAAAACAAATTCAGGAACAATGGAATATCCCTGATCAAGACACTATTGTAAAAACTGTCAAAGATCAAAGCGCCAATTTCGTTAACAATATTCAAGATTACATAAAGAATGTTACTGAAGAGGTCAAAACCAAAACTCCCGAATTGGAAAGATCATGGAATGATGTTAAAACCATGCTCAATAAAGTCGTCGATGATATTAGTAGTGGAATTCCAAATGCTCAGCAACAAGTCGCTGAATTACAAAGTAAATTCCAGCAAGGAGTTCAAACTTTACTTAAAGAATCTGACAAAGCTGCGAAATCTCTGAGCCAACATTCTGGAAAAATACAAGAAGACCTTGCAAAGTTCACAAAACAGGCAGTTGATATTGCTGTACAAGCAACGCAGAATCTAAACAATCAACTTCAAACTGCCGCNACTCAAAAAAGTTAAATAACTAGTATTAATATTTCTTATTAAGATTGAAAATATTAATTATATAAAGAAAAATAAA ] consensusID : consensus_339#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 770 fasta sequence [ATACTCGTTTTTAACTTTTATCCGGATACGATATTAATATTTGGATGAATCCGTTGAATACGATTTGTGACACCGCTCCCCCCTCGCGTTCATTCCACATCTTATTATAATATTATTAGCTCTCGTTTCGAAGGTAAGTAATTATTTTTGTCAAAGTTTAACGCAACGTAACGTAACGTAACGCTTCAAAGCGGAATAAAATAAAAGTGAAACTCGGCCAGGGACCGAGCGAATAGAGGCGAGAGAATTTCTGTGAAAGTAGGGAAACAGCGTAGCATACCGTACCCATAAATCGTGTCGAGTCGCGGCGAGGCATTGATTTGCACGCGAAATACTGAATAATTTATCCGGCCAGTTAACCGAATAATTGCACGTTATTCGACTGCTACGAAACACTCTCCCGATGAGCCGGGTAATCGTTCTGTTTATGTTTCACTATTTAGAGAATAATTATAGGATCAACCGATGCGGTCCAGCGATAGTGAATTATTAATCGAACATGCACGCGGCAAACATTTGTCCTGGTCGTATTCTGCATATATTAATTCATTTACCCTCGTCTATAAGAATAAAATACTCTTTTTTAGGAAAATTTTTTTCCATTATTCTTCCCTTCCTTTCTTTCCTCCTTATTCGAAAAAACGAACGTTTCTGGAAGGAAGAGTTGGACCATGGAGAGCATGGTTTTAACATCATTCCATGATCTTTCCAATTCGGGAGTTTGGTTTGACCTCTTCAGTAACATTCTTTATGTAATCTTGAATATTGTT] [+] EMBL BQ103772 [ATACTCGTTTTTAACTTTTATCCGGATACGATATTAATATTTGGATGAATCCGTTGAATACGATTTGTGACACCGCTCCCCCCTCGCGTTCATTCCACATCTTATTATAATATTATTAGCTCTCGTTTCGAAGGTAAGTAATTATTTTTGTCAAAGTTTAACGCAACGTAACGTAACGTAACGCTTCAAAGCGGAATAAAATAAAAGTGAAACTCGGCCAGGGACCGAGCGAATAGAGGCGAGAGAATTTCTGTGAAAGTAGGGAAACAGCGTAGCATACCGTACCCATAAATCGTGTCGAGTCGCGGCGAGGCATTGATTTGCACGCGAAATACTGAATAATTTATCCGGCCAGTTAACCGAATAATTGCACGTTATTCGACTGCTACGAAACACTCTCCCGATGAGCCGGGTAATCGTTCTGTTTATGTTTCACTATTTAGAGAATAATTATAGGATCAACCGATGCGGTCCAGCGATAGTGAATTATTAATCGAACATGCACGCGGCAAACATTTGTCCTGGTCGTATTCTGCATATATTAATTCATTTACCCTCGTCTATAAGAATAAAATACTCTTTTTTAGGAAAATTTTTTTCCATTATTCTTCCCTTCCTTTCTTTCCTCCTTATTCGAAAAAACGAACGTTTCTGGAAGGAAGAGTTGGACCATGGAGAGCATGGTTTTAACATCATTCCATGATCTTTCCAATTCGGGAGTTTGGTTTGACCTCTTCAGTAACATTCTTTATGTAATCTTGAATATTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_339#0 AAAATATTTTTCGTTCCATTTAAATAGCAAGATAACTTGAATTAAAAT-CGATGATGAGG 59 consensus_339#1 ---------------------ATACTCGTTTTTAACTTTTATCCGGATACGATATTAATA 39 * * ****** ** ** **** * * consensus_339#0 GAAGAGCGAAGACGAAGAAGGATGCTGCGGTAACTGCGAGGCGTCATTATCGTTCCGCGT 119 consensus_339#1 TTTGGATGAATCCGTTGAA------TACGAT--TTGTGA--CACCGCTCCCCCCTCGCGT 89 * *** ** *** * ** * ** ** * * * * ***** consensus_339#0 CTCTCCCTCCCCTTCTCCCCCCCGTGTCACGGAAGCGTTCAGGATGCAAAGTAGCATTTG 179 consensus_339#1 TCATTCCACATCTTATTATAATATTATTA-GCTCTCGTTTCGAAGGTAAGTAATTATTTT 148 * ** * *** * * * * * **** * * * ** * **** consensus_339#0 TACGTATCCTGCGGTGGGACATCGTCAGCTGTTAACTTTTCGAGTTAGCGGAGCAGATAA 239 consensus_339#1 TGT-CAAAGTTTAACGCAACGTAACGTAACGT-AACGCTTCAA---AGCGGAATAAAATA 203 * * * * ** * ** *** *** * ****** * * * consensus_339#0 GGGCCCATGGGCGGTGGCGGAATAGCACTTTGCCTCCGAGTTACACCGCGATAGGCGTAG 299 consensus_339#1 AAAGTGAAACTCGGCCAGGGACCGAGCGAATAGAGGCGAGAGA-ATTTCTGTGAAAGTAG 262 * *** *** * **** * * * * **** consensus_339#0 CGTCAAACTTTCGCTACGCCGCACTGTGAAACCGAATTAGAAT-CGAAGAGGTCTCCAAG 358 consensus_339#1 GGAAACAGCGTAGC-ATACCGTACCCATAAATCGTGTCGAGTCGCGGCGAGGCATTGATT 321 * * * * ** * *** ** *** ** * ** **** * * consensus_339#0 AGCGTTCGATAAAAGTCGATCAGGAGGAGATTCGAATCGTTCTATCTATTCAGT-CACTT 417 consensus_339#1 TGCACGCGA-AATACTGAAT----AATTTATCCGG-CCAGTTAACCGAATAATTGCACGT 375 ** *** ** * * ** * ** ** * * * * * * * * *** * consensus_339#0 TCTGGCTCTTTCACAGTGAATACCTACAAGAAAAATGAAAACCATCCTTACGATTATCTT 477 consensus_339#1 TATTCGACTGCTACGAAACACTCTCCCGATGAGCCGGGTAATCGTTCT---GTTTATGTT 432 * * ** ** * * * * * * ** * * ** * **** ** consensus_339#0 TAGTATTATACTGATTTCGGAGGCCAAAGTTGCTCCGACTAGCACTACCAATTCTCAAGG 537 consensus_339#1 TCACTATTTAGAGAAT----AATTATAGGATCAACCGATGCGGTCCAGCGATAGTGAATT 488 * * ** ** * * * * * **** * * * * ** * ** consensus_339#0 AACTCCTGATGTTCAACTAAGCGAACTTATAAGCCAGGCTCAAGCAAACATCAACAATTT 597 consensus_339#1 ATTAATCGAACATGCACGCGGCAAACATTTGTCCTGGTCGTATTCTGCATATATTAATTC 548 * ** * ** ** *** * * * * * * * * **** consensus_339#0 AGCAAAACAAATTCAGGAACAATGGAATATCCCTGATCAAGACACTATTGTAAAAACTGT 657 consensus_339#1 ATTTACCCTCGTCTAT-AAGAATAAAATACTCTTTTTTAGGAAAATTTT-------TTTC 600 * * * * * ** *** **** * * * * ** * * ** * consensus_339#0 CAAAGATCAAAGCGCCAATTTCGTTAACAATATTCAAGATTACATAAAGAATGTTACTGA 717 consensus_339#1 CATTATTCTTCCCTTCCTTTCTTTCCTCCTTATTCGAAAAAAC-----GAACGTTTCTGG 655 ** ** * * ** * * ***** * * ** *** *** *** consensus_339#0 AGAGGTCAAAACCAAAACTCCCGAATTGGAAAGATCATGGAATGATGTTAAAACCATGCT 777 consensus_339#1 AAGGA--------AGAGTT---GGACCATGGAGAGCATGG-----TTTTAACATCAT--T 697 * * * * * * * *** ***** * **** * *** * consensus_339#0 CAATAAAGTCGTCGATGATATTAGTAGTGGAATTCCAAATGCTCAGCAACAAGTCGCTGA 837 consensus_339#1 CCATGATCTTTCCAAT----TCGGGAGTTTGGTTTGACCTCTTCAGTAACAT-TCTTTAT 752 * ** * * * ** * * *** ** * * **** **** ** * consensus_339#0 ATTACAAAGTAAATTCCAGCAAGGAGTTCAAACTTTACTTAAAGAATCTGACAAAGCTGC 897 consensus_339#1 GTAATCTTGAATATTGTT------------------------------------------ 770 * * * * *** consensus_339#0 GAAATCTCTGAGCCAACATTCTGGAAAAATACAAGAAGACCTTGCAAAGTTCACAAAACA 957 consensus_339#1 ------------------------------------------------------------ consensus_339#0 GGCAGTTGATATTGCCGTACAAGCAACGCAGAATCTAAACAATCAACTTCAAACTGCCGC 1017 consensus_339#1 ------------------------------------------------------------ consensus_339#0 AACTCAAAAAAGTTAAATAACTAGTATTAATATTTCTTATTAAGATTGAAAATATTAATT 1077 consensus_339#1 ------------------------------------------------------------ consensus_339#0 ATATAAAGAAAAATAAAAAAATATAAAAAATTGTTAATATAAAAAAAAAAAAAA 1131 consensus_339#1 ------------------------------------------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |