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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_342#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence
[TGACATTTAAACAAAGATAAAAAGATTTCGATGTTTTTATATTTTTTTTCTAATTTATCCTTTAAAGAGTAATTTTCATTATTCTGGATTCTTTTACAGGTGACAAATTTCGTCTGGTTCTGGCTACGACTTTGAGAGAGGACGGTTATCCTGATGGAGGGGAGTGGAACGCGACTGAACAGGAAGGCGGTTCCAGAGCAGACAGTTTTGAATATGTGATGTCCGGTATGGTTTATCGAATAGAAGGTGATGAAGCAAGCAATGAACCCAGCAGTAGACTATCTGCCTACGTATCCTTTGGAGGATTGCTGATGAGGTTACAGGGTGATGCAAACAACCTACACGGTTTCGAGATAGATCAACATATGTACTTACTCATGAAAAAGTTAGCGTTCTAACTATGTTATATTTGTTATAACTATGTTACAATTATAACTTAGAAAATATGTATTTTAAATATATTCTTTGTTCATGAGGAATTATTTTAAATATAAGATAAAGATAATTGAACTGAAAAAATATTAATGATTGATGCGTACACAAAAATGTATTGTATGTGTATTTGATCTATAACAGTATATTTATGT]
[+] EMBL BI507952 [TGACATTTAAACAAAGATAAAAAGATTTCGATGTTTTTATATTTTTTTTCTAATTTATCCTTTAAAGAGTAATTTTCATTATTCTGGATTCTTTTACAGGTGACAAATTTCGTCTGGTTCTGGCTACGACTTTGAGAGAGGACGGTTATCCTGATGGAGGGGAGTGGAACGCGACTGAACAGGAAGGCGGTTCCAGAGCAGACAGTTTTGAATATGTGATGTCCGGTATGGTTTATCGAATAGAAGGTGATGAAGCAAGCAATGAACCCAGCAGTAGACTATCTGCCTACGTATCCTTTGGAGGATTGCTGATGAGGTTACAGGGTGATGCAAACAACCTACACGGTTTCGAGATAGATCAACATATGTACTTACTCATGAAAAAGTTAGCGTTCTAACTATGTTATATTTGTTATAACTATGTTACAATTATAACTTAGAAAATATGTATTTTAAATATATTCTTTGTTCATGAGGAATTATTTTAAATATAAGATAAAGATAATTGAACTGAAAAAATATTAATGATTGATGCGTACACAAAAATGTATTGTATGTGTATTTGATCTATAACAGTATATTTATGT]
consensusID : consensus_342#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence
[AGAAATGAAATATTGCAAATAAATCGAAGTTAATGTAAAATGTCATATGCAGTTATTCTTCAAGAAATATCTCGATGTTGTGACTGTAACTGTGTTCTGAAATCATTTTGAGACAAATCATAAGTGTAAATGTGCGAATATTGGAATATAGAACAAAAGTAGAATATCCTACGCGACGAAATACGGATGCGCATCGTGTGAAGAATGGATATAAACTATCGTGACAAATTTCGTCTGGTTCTGGCTACGACTTTGAGAGAGGACGGTTATCCTGATGGAGGGGAGTGGAACGCGACTGAACAGGAAGGCGGTTCCAGAGCAGACAGTTTTGAATATGTGATGTCCGGTATGGTTTATCGAATAGAAGGTGATGAAGCAAGCAATGAACCCAGCAGTAGACTATCTGCCTACGTATCCTTTGGAGGATTGCTGATGAGGTTACAGGGTGATGCAAACAACCTACACGGTTTCGAGATAGATCAACATATGTACTTACTCATGAAAAAGTTAGCGTTCT]
[+] EMBL BI512650 [AGAAATGAAATATTGCAAATAAATCGAAGTTAATGTAAAATGTCATATGCAGTTATTCTTCAAGAAATATCTCGATGTTGTGACTGTAACTGTGTTCTGAAATCATTTTGAGACAAATCATAAGTGTAAATGTGCGAATATTGGAATATAGAACAAAAGTAGAATATCCTACGCGACGAAATACGGATGCGCATCGTGTGAAGAATGGATATAAACTATCGTGACAAATTTCGTCTGGTTCTGGCTACGACTTTGAGAGAGGACGGTTATCCTGATGGAGGGGAGTGGAACGCGACTGAACAGGAAGGCGGTTCCAGAGCAGACAGTTTTGAATATGTGATGTCCGGTATGGTTTATCGAATAGAAGGTGATGAAGCAAGCAATGAACCCAGCAGTAGACTATCTGCCTACGTATCCTTTGGAGGATTGCTGATGAGGTTACAGGGTGATGCAAACAACCTACACGGTTTCGAGATAGATCAACATATGTACTTACTCATGAAAAAGTTAGCGTTCT]
consensusID : consensus_342#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence
[TGGCTCGAATAATACACGATAGATTATCAATATCGTACATGATTTTCGAAATCGAGTATGTTTCATTTATCTTATTGTTTCTCACTTTGTCATTCGTTTATTTTCCACCGTGTCACGAACGAGTATTTGAAGTTTGTTTCTTCCGAGGAAGAAGGATGAAACGAAAGGAAATATACACGAAGAATAAACTCGCAAGACACCGTTCGAGAAGTTGAGAAAAGGGTGTTACGTGATTAGGATTCGATCGTTCGACGATGAAAGAACGATGCAAAGATTGGTATATAAGGCAAGGGGAGCCGGAAAGAGAAAAAGTATTTAAAGGAAATCAGCTGGCAAAGTGACGGGGGCGGCCATCGTTCACGCGATCATGGAATTACAATCGAGGATCGGCCACGGCGATTACCTGAGCAGGCTCCATTGCGAATCCGAGTCCTTCAAAATGGACTTAATCCTAGACATTAACAGCTGGCTGTATCCCATGGAACTTGGTGACAAATTTCGTCTGGTTCT]
[+] EMBL BI511838 [TGGCTCGAATAATACACGATAGATTATCAATATCGTACATGATTTTCGAAATCGAGTATGTTTCATTTATCTTATTGTTTCTCACTTTGTCATTCGTTTATTTTCCACCGTGTCACGAACGAGTATTTGAAGTTTGTTTCTTCCGAGGAAGAAGGATGAAACGAAAGGAAATATACACGAAGAATAAACTCGCAAGACACCGTTCGAGAAGTTGAGAAAAGGGTGTTACGTGATTAGGATTCGATCGTTCGACGATGAAAGAACGATGCAAAGATTGGTATATAAGGCAAGGGGAGCCGGAAAGAGAAAAAGTATTTAAAGGAAATCAGCTGGCAAAGTGACGGGGGCGGCCATCGTTCACGCGATCATGGAATTACAATCGAGGATCGGCCACGGCGATTACCTGAGCAGGCTCCATTGCGAATCCGAGTCCTTCAAAATGGACTTAATCCTAGACATTAACAGCTGGCTGTATCCCATGGAACTTGGTGACAAATTTCGTCTGGTTCT]
consensusID : consensus_342#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence
[TCACATTTACCTTCCTGTCGCGTATCGCGCGCGCTTTTTCTACCGGTTTCTTCGCCGATGCGCGTTACGTGCCATGATTTTGTACATGTACACGCAGTTTCGTTTCGCGTCGCGCGACTAACCTACATTACACGACGTACGGACATGTTGAATTACGCCAAGTTAAAAATGTGTGTTATGATTGTGTCGAATACAAGGCATCGAAAAAGAAATGAAATATTGCAAATAAATCGAAGTTAATGTAAAATGTCATATGCAGTTATTCTTCAAGAAATATCTCGATGTTGTGACTGTAACTGTGTTCTGAAATCATTTCGAGACAAATCATAAGTGTAAATGTGCGAATATTGGAATATAGAACAAAAGTAGAATATCCTACTCGACGAAATACGGATGCGCATCGTGTGAAGAATGGATATAAACTATCGTTAAGTTGTTCTCTCTTTCTCTTGTCTGTGGTTGACGTCGTGAGACAAGA]
[+] EMBL BI512134 [TCACATTTACCTTCCTGTCGCGTATCGCGCGCGCTTTTTCTACCGGTTTCTTCGCCGATGCGCGTTACGTGCCATGATTTTGTACATGTACACGCAGTTTCGTTTCGCGTCGCGCGACTAACCTACATTACACGACGTACGGACATGTTGAATTACGCCAAGTTAAAAATGTGTGTTATGATTGTGTCGAATACAAGGCATCGAAAAAGAAATGAAATATTGCAAATAAATCGAAGTTAATGTAAAATGTCATATGCAGTTATTCTTCAAGAAATATCTCGATGTTGTGACTGTAACTGTGTTCTGAAATCATTTCGAGACAAATCATAAGTGTAAATGTGCGAATATTGGAATATAGAACAAAAGTAGAATATCCTACTCGACGAAATACGGATGCGCATCGTGTGAAGAATGGATATAAACTATCGTTAAGTTGTTCTCTCTTTCTCTTGTCTGTGGTTGACGTCGTGAGACAAGA]
consensusID : consensus_342#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence
[GTTACAATTAATTGGATTCCGCGTCTCTTATGTGTAAAAATTTGTTGCTCGATTTGTTCTGTGTATTGATAATATATATTATACGCGCATAATACCTGGCAATGACAATTTCTTTTTCTGTTTCTTTTTTTTTTCGGTTTTTTCCTTGACTGGATGGCGATCGATGATGATGGGTGGTGGTTACAACAGTGAGCAGGCTCCATTGCGAATCCGAGTCCTTCAAAATGGACTTAATCCTNGACATTAACAGCTGGNNNGTATCCTATGGAACTTGGTGACAAATTTCGTCTGGTTCTGGCTACGACTTTGAGNGAGGACGGTTATCCTGATGGAGGGGAGTGGAACGCGACTGAACAGGA]
[+] EMBL BI509140 [GTTACAATTAATTGGATTCCGCGTCTCTTATGTGTAAAAATTTGTTGCTCGATTTGTTCTGTGTATTGATAATATATATTATACGCGCATAATACCTGGCAATGACAATTTCTTTTTCTGTTTCTTTTTTTTTTCGGTTTTTTCCTTGACTGGATGGCGATCGATGATGATGGGTGGTGGTTACAACAGTGAGCAGGCTCCATTGCGAATCCGAGTCCTTCAAAATGGACTTAATCCTNGACATTAACAGCTGGNNNGTATCCTATGGAACTTGGTGACAAATTTCGTCTGGTTCTGGCTACGACTTTGAGNGAGGACGGTTATCCTGATGGAGGGGAGTGGAACGCGACTGAACAGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_342#0 ------------------------------------------------------------
consensus_342#1 AGAAATGAAATATTGCAAATAAATCGAAGTTAATGTAAAATGTCATATGCAGTTATTCTT 60
consensus_342#3 ------------------------------------------------------------
consensus_342#4 ------------------------------------------------------------
consensus_342#2 --------------------------TGGCTCGAATAATACACGATAGATTATCAATATC 34
consensus_342#0 ------------------------------------------TGACATTTAAACAAA--- 15
consensus_342#1 CAAGAAATATCTCGATGTTGTGACTGTAACTGTGTTCTGAAATCATTTTGAGACAAATCA 120
consensus_342#3 ------------------------------------------TCACATTTACCTTCCTG- 17
consensus_342#4 -----------------------------------------GTTACAATTAATT------ 13
consensus_342#2 GTACATGATTTTCGAAATCGAGTATGTTTCATTTATCTTATTGTTTCTCACTTTGTCATT 94
consensus_342#0 --GATAAAAAGATTT-CGATGTTTTTATATTTTTTTTC--TAATTTATCCTTT------A 64
consensus_342#1 TAAGTGTAAATGTGC-GAATATTGGAATATAGAACAAAAGTAGAATATCCTACGCGACGA 179
consensus_342#3 -TCGCGTATCGCGCG-CGCTTTTTCTACCGGTTTCTTCGCCGATGCGCGTTACGT---GC 72
consensus_342#4 ---GGATTCCGCGTC-TCTTATGTGTAAAAATTTGTTGCTCGATTTGTTCTGTGT----- 64
consensus_342#2 CGTTTATTTTCCACCGTGTCACGAACGAGTATTTGAAGTTTGTTTCTTCCGAGGAAGAAG 154
consensus_342#0 AAGAGTAATTTTCATTATTCTGGATTCTTTTACAG------GTGACAAA-TTT------- 110
consensus_342#1 AATACGGATGCGCATCGTGTGAAGAATGGATATAAACTATCGTGACAAA-TTT------- 231
consensus_342#3 CATGATTTTGTACATGTACACGCAGTTTCGTTTCGCGTCGCGCGACTAA-CCTACATTAC 131
consensus_342#4 ATTGATAATATATATTATACGCGCATAATACCTGGCA----ATGACAAT-TTCTTTTTCT 119
consensus_342#2 GATGAAACGAAAGGAAATATACACGAAGAA--TAAACTCGCAAGACACCGTTCGAGAAGT 212
***
consensus_342#0 ----CGTCTGGTTCTGGCTA-CGACTTTGAGAGAGGACGGT-TATCCTGA-TGGAGGGGA 163
consensus_342#1 ----CGTCTGGTTCTGGCTA-CGACTTTGAGAGAGGACGGT-TATCCTGA-TGGAGGGGA 284
consensus_342#3 ACGACGTACGGACATGTTGAATTACGCCAAGTTAAAAATGTGTGTTATGA-TTGTGTCGA 190
consensus_342#4 GTTTCTTTT--TTTTTTCGGTTTTTTCCTTGACTGGATGGCGATCGATGA-TGATGGGTG 176
consensus_342#2 TGAGAAAAGGGTGTTACGTGATTAGGATTCGATCGTTCGACGATGAAAGAACGATGCAAA 272
* * ** *
consensus_342#0 GTGGAACGCGACTGAACAGGAAGGCGGTTCCA-GAGCAGACAGTTTTGAATATG--TGAT 220
consensus_342#1 GTGGAACGCGACTGAACAGGAAGGCGGTTCCA-GAGCAGACAGTTTTGAATATG--TGAT 341
consensus_342#3 ATACAAGGCATCGAAAAAGAAATGAAATATTGCAAATAAATCGAAGTTAATGTA--AAAT 248
consensus_342#4 GTGGT-TACAACAGTGAGCAGGCTCCATTGCGAATCCGAGTCCTTCAAAATGGACTTAAT 235
consensus_342#2 GATTGGTATATAAGGCAAGGGGAGCCGGAAAGAGAAAAAGTATTT--AAAGGAAATCAGC 330
**
consensus_342#0 GTCCGGTATGG-TTTATCGAATAGAAG-GTGATGAAGCAAGCAATG-AACCCAGCAGT-A 276
consensus_342#1 GTCCGGTATGG-TTTATCGAATAGAAG-GTGATGAAGCAAGCAATG-AACCCAGCAGT-A 397
consensus_342#3 GTCATATGCAG-TTATTCTTCAAGAAATATCTCGATGTTGTGACTGTAACTGTGTTCTGA 307
consensus_342#4 CCTNGACATTA-ACAGCTGGNNNGTATCCTATGGAACTTGGTGACA-AATTTCGTCTG-- 291
consensus_342#2 TGGCAAAGTGACGGGGGCGGCCATCGTTCACGCGATCATGGAATTACAATCGAGGATC-- 388
** ** *
consensus_342#0 GACTATCTGCCTACGTATCCTTTGGAGGATTGCTG----ATGAGGTTACAGGGTGATGCA 332
consensus_342#1 GACTATCTGCCTACGTATCCTTTGGAGGATTGCTG----ATGAGGTTACAGGGTGATGCA 453
consensus_342#3 AATCATTTCGAGACAAATCATAAGTGTAAATG-TG----CGAATATTGGAATATAGAACA 362
consensus_342#4 ---GTTCTGGCTACG-ACTTTGAGNGAGGACGGTT----ATCCTGATGGAGGGGAGTGGA 343
consensus_342#2 --GGCCACGGCGATT--ACCTGAGCAGGCTCCATTGCGAATCCGAGTCCTTCAAAATGGA 444
* * * * * *
consensus_342#0 AACAA-CCTACACGGTTTCGAGATAGATCAACATATGTACTTACTCATGAAAAAGTTAGC 391
consensus_342#1 AACAA-CCTACACGGTTTCGAGATAGATCAACATATGTACTTACTCATGAAAAAGTTAGC 512
consensus_342#3 AAAGT-AGAATATCCTACTCGACGAAATACGGATGCGCATCGTGTGAAGAATGGATATAA 421
consensus_342#4 ACGCG-ACTGAACAGGA------------------------------------------- 359
consensus_342#2 CTTAATCCTAGACATTAACAGCTGGCTGTATCCCATGGAACTTGGTGACAAATTTCGTCT 504
*
consensus_342#0 GTTCTAACTATGTTATATTTGTTATAACTATGTTACAATTATAACTTAGAAAATATGTAT 451
consensus_342#1 GTTCT------------------------------------------------------- 517
consensus_342#3 ACTATCGTTAAGTTGTTCTCTCTTTCTCTTGTCTGTGGTTGACGTCGTGAGACAAGA--- 478
consensus_342#4 ------------------------------------------------------------
consensus_342#2 GGTTCT------------------------------------------------------ 510
consensus_342#0 TTTAAATATATTCTTTGTTCATGAGGAATTATTTTAAATATAAGATAAAGATAATTGAAC 511
consensus_342#1 ------------------------------------------------------------
consensus_342#3 ------------------------------------------------------------
consensus_342#4 ------------------------------------------------------------
consensus_342#2 ------------------------------------------------------------
consensus_342#0 TGAAAAAATATTAATGATTGATGCGTACACAAAAATGTATTGTATGTGTATTTGATCTAT 571
consensus_342#1 ------------------------------------------------------------
consensus_342#3 ------------------------------------------------------------
consensus_342#4 ------------------------------------------------------------
consensus_342#2 ------------------------------------------------------------
consensus_342#0 AACAGTATATTTATGT 587
consensus_342#1 ----------------
consensus_342#3 ----------------
consensus_342#4 ----------------
consensus_342#2 ----------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |