|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_346#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1190 fasta sequence
[ACAATGAATGCGACCAATGTGCGACTGCTGGATTGGTTCATTTGACCGTAGGCAGAGTTCATTTGGAATTAGCAGGATTTTGTAAAGCTTTAGAAGCTTTTCAAAGAGCTCATAAAATTGCTCATTCGATTCAAGACCCGTCATTGGAATTGCAGGTATACGTAGGTTTATCGGAGCTATTCTGCAGATTACACGATGCTGATAAGAGTGCTAGGTATGCGGCTAGAGCTTACGACCTCTCGAGAAGCTTGCAACTGGGCGACTTAAATTCTCGACATCATAGAGCAGCTCTTCTTCAGATGGCAGCGGCACTCCGGAAAAAAGGAGAACTCGGTGATGCCCACGATTACTGTTCGGAGGCAACACGATTATCGTTAGTTTCTGGAGATCAAGCTAGTTATGCCAGGAGTATACGAATAATGGGAGATATTTATAGAAAAAAGTCCGATATAAACAAAGCATTTCGACAGTATGAAAGTGCGATGGGATCCGCGGCAGCGACTGGAGACCGTCTCTGTCAAATGGAAGCTATGGACGGCGCAGCAAGATGTCTTGAGGCTCTTCGATTACAACATAAAATATGCAATTGTCGTCCTCTTGAATTCAATACTAGGCTGCTCGAAGTAGCTGGATCAGTTGGTGCGAAGTTCCTGGTACGAACGGTGAGATCGAGGCTTTCGCGTATTTATGATTCACTTGGAGATGAAGAACAAAAGACTCATCACGAAAGATTAGCTACGGCAATGGAAGAAGATTTAGAATTGCGATGTGGTAGCTGTAACGAGCCTTTTGGCCTTGAAACCGATTCCTTGGAAGCATTACCTTGTTCTCATATATTACATGCCAGGTGTGCATACGACATTTTAAAAAAACGTGACAAAAAGAAGAAACGTTTGTGTCCCGACTGTCACAAATCCGTTAGTTCACGATTGTACCTGCATTGCGAAGATCCTCATGGCATGAATACTTTGAATCACAGTTCCTTGAGTCTGGCATCGTTGAGAGCCAGCAGTTTAGCCACGTTGGACGACTGTCACGCTACTAGCAGTGTTTAAATCTGATAATATCCGTTACATCAACTTACTTATTTACTTATGTACTTAGGATTTTGTTTACTTAGAAATTTTTTGAGCAATGTGTTCTTTGTAATGATCACCACTAATATTTCACAAATGAATGTAAACAAAGCA]
[+] EMBL BI514042 [ACAATGAATGCGACCAATGTGCGACTGCTGGATTGGTTCATTTGACCGTAGGCAGAGTTCATTTGGAATTAGCAGGATTTTGTAAAGCTTTAGAAGCTTTTCAAAGAGCTCATAAAATTGCTCATTCGATTCAAGACCCGTCATTGGAATTGCAGGTATACGTAGGTTTATCGGAGCTATTCTGCAGATTACACGATGCTGATAAGAGTGCTAGGTATGCGGCTAGAGCTTACGACCTCTCGAGAAGCTTGCAACTGGGCGACTTAAATTCTCGACATCATAGAGCAGCTCTTCTTCAGATGGCAGCGGCACTCCGGAAAAAAGGAGAACTCGGTGATGCCCACGATTACTGTTCGGAGGCAACACGATTATCGTTAGTTTCTGGAGATCAAGCTAGTTATGCCAGGAGTATACGAATAATGGGAGATATTTATAGAAAAAAGTCCGATATAAACAAAGCATTTCGACAGTATGAAAGTGCGATGGGATCCG ]
[+] EMBL BI514135 [ACAATGAATGCGACCAATGTGCGACTGCTGGATTGGTTCATTTGACCGTAGGCAGAGTTCATTTGGAATTAGCAGGATTTTGTAAAGCTTTAGAAGCTTTTCAAAGAGCTCATAAAATTGCTCATTCGATTCAAGACCCGTCATTGGAATTGCAGGTATACGTAGGTTTATCGGAGCTATTCTGCAGATTACACGATGCTGATAAGAGTGCTAGGTATGCGGCTAGAGCTTACGACCTCTCGAGAAGCTTGCAACTGGGCGACTTAAATTCTCGACATCATAGAGCAGCTCTTCTTCAGATGGCAGCGGCACTCCGGAAAAAAGGAGAACTCGGTGATGCCCACGATTACTGTTCGGAGGCAACACGATTATCGTTAGTTTCTGGAGATCAAGCTAGTTATGCCAGGAGTATACGAATAATGGGAGATATTTATAGAAAAAAGTCCGATATAAACAAAGCATTTCGACAGTATGAAAGTGCGATGGGAT ]
[+] EMBL BI513537 [ CATAGAGCAGCTCTTCTTCAGATGGCAGCGGCACTCCGGAAAAAAGGAGAACTCGGTGACGCCCACGATTACTGTTCGGAGGCAACACGATTATCGTTAGTTTCTGGAGATCAAGCTAGTTATGCCAGGAGTATACGAATAATGGGAGATATTTATAGAAAAAAGTCCGATATAAACAAAGCATTTCGACAGTATGAAAGTGCGATGGGATCCGCGGCAGCGACTGGAGACCGTCTCTGTCAAATGGAAGCTATGGACGGCGCAGCAAGATGTCTTGAGGCTCTTCGATTACAACATAAAATATGCAATTGTCGTCCTCTTGAATTCAATACTAGGCTGCTCGAAGTAGCTGGATCAGTTGGTGCGAAGTTCCTGGTACGAACGGTGAGATCGAGGCTTTCGCGTATTTATGATTCACTTGGAGATGAAGAACAAAAGACTCATCACGAAAGATTAGCTACGGCAATGGAAGAAGATTTAGAATTGCGATGTGGTAGCTGTAACGAGCCTTTTGGCCTTGAAACCGATTC ]
[+] EMBL BI513493 [ ATGATTCACTTGGAGATGAAGAACAAAAGACTCATCACGAAAGATTAGCTACGGCAATGGAAGAAGATTTAGAATTGCGATGTGGTAGCTGTAACGAGCCTTTTGGCCTTGAAACCGATTCCTTGGAAGCATTACCTTGTTCTCATATATTACATGCCAGGTGTGCATACGACATTTTAAAAAAACGTGACAAAAAGAAGAAACGTTTGTGTCCCGACTGTCACAAATCCGTTAGTTCACGATTGTACCTGCATTGCGAAGATCCTCATGGCATGAATACTTTGAATCACAGTTCCTTGAGTCTGGCATCGTTGAGAGCCAGCAGTTTAGCCACGTTGGACGACTGTCACGCTACTAGCAGTGTTTAAATCTGATAATATCCGTTACATCAACTTACTTATTTACTTATGTACTTAGGATTTTGTTTACTTAGAAATTTTTTGAGCAATGTGTTCTTTGTAATGATCACCACTAATATTTCACAAATGAATGTAAACAAAGCA]
consensusID : consensus_346#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence
[AAAGATTGGGTGCATTAGATAGGGCTTTGGACTATGCGAGACACAGCTTGTACAATGAATGCGACCAATGTGCGACTGCTGGATTGGTTCATTTGACCGTAGGCAGAGTTCATTTGGAATTAGCAGGATTTTGTAAAGCTTTAGAAGCTTTTCAAAGAGCTCATAAAATTGCTCATTCGATTCAAGACCCGTCATTGGAATTGCAGGTATACGTAGGTTTATCGGAGCTATTCTGCAGATTACACGATGCTGATAAGAGTGCTAGGTATGCGGCTAGAGCTTACGACCTCTCGAGAAGCTTGCAACTGGGCGACTTAAATTCTCGACATCATAGAGCAGCTCTTCTTCAGATGGCAGCGGCACTCCGGAAAAAAGGAGAACTCGGTGATGCCCACGATTACTGTTCGGTAGGCAGTAACTTTCTTTCTACAACCCCCATATTCAACTGTCACGTATCCACTTGGACCTGTTTAT]
[+] EMBL BI515794 [AAAGATTGGGTGCATTAGATAGGGCTTTGGACTATGCGAGACACAGCTTGTACAATGAATGCGACCAATGTGCGACTGCTGGATTGGTTCATTTGACCGTAGGCAGAGTTCATTTGGAATTAGCAGGATTTTGTAAAGCTTTAGAAGCTTTTCAAAGAGCTCATAAAATTGCTCATTCGATTCAAGACCCGTCATTGGAATTGCAGGTATACGTAGGTTTATCGGAGCTATTCTGCAGATTACACGATGCTGATAAGAGTGCTAGGTATGCGGCTAGAGCTTACGACCTCTCGAGAAGCTTGCAACTGGGCGACTTAAATTCTCGACATCATAGAGCAGCTCTTCTTCAGATGGCAGCGGCACTCCGGAAAAAAGGAGAACTCGGTGATGCCCACGATTACTGTTCGGTAGGCAGTAACTTTCTTTCTACAACCCCCATATTCAACTGTCACGTATCCACTTGGACCTGTTTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_346#0 ---------------------------------------------------ACAATGAAT 9
consensus_346#1 AAAGATTGGGTGCATTAGATAGGGCTTTGGACTATGCGAGACACAGCTTGTACAATGAAT 60
*********
consensus_346#0 GCGACCAATGTGCGACTGCTGGATTGGTTCATTTGACCGTAGGCAGAGTTCATTTGGAAT 69
consensus_346#1 GCGACCAATGTGCGACTGCTGGATTGGTTCATTTGACCGTAGGCAGAGTTCATTTGGAAT 120
************************************************************
consensus_346#0 TAGCAGGATTTTGTAAAGCTTTAGAAGCTTTTCAAAGAGCTCATAAAATTGCTCATTCGA 129
consensus_346#1 TAGCAGGATTTTGTAAAGCTTTAGAAGCTTTTCAAAGAGCTCATAAAATTGCTCATTCGA 180
************************************************************
consensus_346#0 TTCAAGACCCGTCATTGGAATTGCAGGTATACGTAGGTTTATCGGAGCTATTCTGCAGAT 189
consensus_346#1 TTCAAGACCCGTCATTGGAATTGCAGGTATACGTAGGTTTATCGGAGCTATTCTGCAGAT 240
************************************************************
consensus_346#0 TACACGATGCTGATAAGAGTGCTAGGTATGCGGCTAGAGCTTACGACCTCTCGAGAAGCT 249
consensus_346#1 TACACGATGCTGATAAGAGTGCTAGGTATGCGGCTAGAGCTTACGACCTCTCGAGAAGCT 300
************************************************************
consensus_346#0 TGCAACTGGGCGACTTAAATTCTCGACATCATAGAGCAGCTCTTCTTCAGATGGCAGCGG 309
consensus_346#1 TGCAACTGGGCGACTTAAATTCTCGACATCATAGAGCAGCTCTTCTTCAGATGGCAGCGG 360
************************************************************
consensus_346#0 CACTCCGGAAAAAAGGAGAACTCGGTGATGCCCACGATTACTGTTCGG-AGGCAACACGA 368
consensus_346#1 CACTCCGGAAAAAAGGAGAACTCGGTGATGCCCACGATTACTGTTCGGTAGGCAGTAACT 420
************************************************ ***** *
consensus_346#0 TTATCGTTAGTTTCTGGAGATCAAGCTAGTTATGCCAGGAGTATACGAATAATGGGAGAT 428
consensus_346#1 TTCTTTCTACAACCCCCATATTCAACT------GTCACGTATCCAC------TTGGACCT 468
** * ** * * ** * ** * ** * * ** * *** *
consensus_346#0 ATTTATAGAAAAAAGTCCGATATAAACAAAGCATTTCGACAGTATGAAAGTGCGATGGGA 488
consensus_346#1 GTTTAT------------------------------------------------------ 474
*****
consensus_346#0 TCCGCGGCAGCGACTGGAGACCGTCTCTGTCAAATGGAAGCTATGGACGGCGCAGCAAGA 548
consensus_346#1 ------------------------------------------------------------
consensus_346#0 TGTCTTGAGGCTCTTCGATTACAACATAAAATATGCAATTGTCGTCCTCTTGAATTCAAT 608
consensus_346#1 ------------------------------------------------------------
consensus_346#0 ACTAGGCTGCTCGAAGTAGCTGGATCAGTTGGTGCGAAGTTCCTGGTACGAACGGTGAGA 668
consensus_346#1 ------------------------------------------------------------
consensus_346#0 TCGAGGCTTTCGCGTATTTATGATTCACTTGGAGATGAAGAACAAAAGACTCATCACGAA 728
consensus_346#1 ------------------------------------------------------------
consensus_346#0 AGATTAGCTACGGCAATGGAAGAAGATTTAGAATTGCGATGTGGTAGCTGTAACGAGCCT 788
consensus_346#1 ------------------------------------------------------------
consensus_346#0 TTTGGCCTTGAAACCGATTCCTTGGAAGCATTACCTTGTTCTCATATATTACATGCCAGG 848
consensus_346#1 ------------------------------------------------------------
consensus_346#0 TGTGCATACGACATTTTAAAAAAACGTGACAAAAAGAAGAAACGTTTGTGTCCCGACTGT 908
consensus_346#1 ------------------------------------------------------------
consensus_346#0 CACAAATCCGTTAGTTCACGATTGTACCTGCATTGCGAAGATCCTCATGGCATGAATACT 968
consensus_346#1 ------------------------------------------------------------
consensus_346#0 TTGAATCACAGTTCCTTGAGTCTGGCATCGTTGAGAGCCAGCAGTTTAGCCACGTTGGAC 1028
consensus_346#1 ------------------------------------------------------------
consensus_346#0 GACTGTCACGCTACTAGCAGTGTTTAAATCTGATAATATCCGTTACATCAACTTACTTAT 1088
consensus_346#1 ------------------------------------------------------------
consensus_346#0 TTACTTATGTACTTAGGATTTTGTTTACTTAGAAATTTTTTGAGCAATGTGTTCTTTGTA 1148
consensus_346#1 ------------------------------------------------------------
consensus_346#0 ATGATCACCACTAATATTTCACAAATGAATGTAAACAAAGCA 1190
consensus_346#1 ------------------------------------------
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |