These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_347#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 674 fasta sequence [TGTACGCGATGCCTGATCCCGTAACGCTGAGCAACAATGGTGACGTAGAGCTGTTCATCCTGGCGGTCGTATGATCCTCGGCGGTCTTGTTCGGCAAATTGCCCTTGCTGGCGTTCAGCGCACTGTTTGTCGGGTCTTCGTCAATGTATGTGAAGTCAGAAAGTGGTCGGGGCCCAGTGTGGCTGCGTGAACTGCGCATACTGTGTAAGCTGTGTAAACTATGGACAGAGCGACGCTCCTCCAAATCTTCTAGAGTCGACTTGAACGCTCTGATTACTCGAAGCTGTGTCTGTAGTCGTGTTAGACCACGGATCCATAGAATTTGTCCTGCGCGCGGCTTTTTATCCGAGTCAGGGTCGAATTTCTCATCTCCTAGATTGATCGCACTGATATCATCCGGCTGGCCGCGGCCCCATGAAAGGATTTTAGGAATCTTGCGCGTAGGAATAGTTGTAATTACTTGGCCCCACAATAGAGTACCGACTCCGAAGAATAGGCACCACATCCATTGTTCTAATGTGAGAGCTTTCGTGCTGAACGCCATTTTACCATATTGTATGATAACTACCTGCGATAGACATGTTACGATCCAGATAGTGTAAAAGATGGGATTGGTGAATATTCCTTGGAAGNCATTACGCTGACCATGGATTTTTCTAGCGTTAAATTCGTTG] [+] EMBL BI505303 [TGTACGCGATGCCTGATCCCGTAACGCTGAGCAACAATGGTGACGTAGAGCTGTTCATCCTGGCGGTCGTATGATCCTCGGCGGTCTTGTTCGGCAAATTGCCCTTGCTGGCGTTCAGCGCACTGTTTGTCGGGTCTTCGTCAATGTATGTGAAGTCAGAAAGTGGTCGGGGCCCAGTGTGGCTGCGTGAACTGCGCATACTGTGTAAGCTGTGTAAACTATGGACAGAGCGACGCTCCTCCAAATCTTCTAGAGTCGACTTGAACGCTCTGATTACTCGAAGCTGTGTCTGTAGTCGTGTTAGACCACGGATCCATAGAATTTGTCCTGCGCGCGGCTTTTTATCCGAGTCAGGGTCGAATTTCTCATCTCCTAGATTGATCGCACTGATATCATCCGGCTGGCCGCGGCCCCATGAAAGGATTTTAGGAATCTTGCGCGTAGGAATAGTTGTAATTACTTGGCCCCACAATAGAGTACCGACTCCGAAGAATAGGCACCACATCCATTGTTCTAATGTGAGAGCTTTCGTGCTGAACGCCATTTTACCATATTGTATGATAACTACCTGCGATAGACATGTTACGATCCAGATAGTGTAAAAGATGGGATTGGTGAATATTCCTTGGAAGNCATTACGCTGACCATGGATTTTTCTAGCGTTAAATTCGTTG] [+] EMBL BI505444 [TGTACGCGATGCCTGATCCCGTAACGCTGAGCAACAATGGTGACGTAGAGCTGTTCATCCTGGCGGTCGTATGATCCTCGGCGGTCTTGTTCGGCAAATTGCCCTTGCTGGCGTTCAGCGCACTGTTTGTCGGGTCTTCGTCAATGTATGTGAAGTCAGAAAGTGGTCGGGGCCCAGTGTGGCTGCGTGAACTGCGCATACTGTGTAAGCTGTGTAAACTATGGACAGAGCGACGCTCCTCCAAATCTTCTAGAGTCGACTTGAACGCTCTGATTACTCGAAGCTGTGTCTGTAGTCGTGTTAGACCACGGATCCATAGAATTTGTCCTGCGCGCGGCTTTTTATCCGAGTCAGGGTCGAATTTCTCATCTCCTAGATTGATCGCACTGATATCATCCGGCTGGCCGCGGCCCCATGAAAGGATTTTAGGAATCTTGCGCGTAGGAATAGTTGTAATTACTTGGCCCCACAATAGAGTACCGACTCCGAAGAATAGGCACCACATCCATTGTTCTAATGTGAGAGCTTTCGTGCTGAACGCCATTTTACCATATTGTATGATAACTACCTGCGATAGACATGTTACGATCCAGATAGTG ] consensusID : consensus_347#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 580 fasta sequence [TTTTTGTCCTTTCCTCCGAACGCGCTGGCCACGAGATAAACAAGGATGAAGATGACTTCTTTTTCGTGTTTACATATCGTCAGAGAGGATCGAACGTAACACAGCTTGATAAACATATCGCTGCTGACCCCGCCATTCTTCTCCCATNCTAAACAGCGGTCTCTGTATGACTGTGACTTGACAATCTTTCCACATCTATCTCGGGTATGGTCAGTTCGTCTGGGTTGTTATCGGCGTATTCAATGCTGCTCGTTTGCGAGAGCCGCTTGCTTAAGGACGACTGTTTTCTCAGTACCTCCGCCAATGTAGTGCTGCTGTGCTCGCTCGTGTAGCGTGCGTCTAGGCCCTGCCGAAATGCGTTCACTACGCGGATAGCTTGGTCTGTCGAACTCTTGCTGTAGGGTACTGGTATCAAACGTTCCTGCAACTCGCCACCTATTACCTGTGTCTGTAGTCGTGTTAGACCACGGATCCATAGAATTTGTCCTGCGCGCGGCTTTTTATCCGAGTCAGGGTCGAATTTCTCATCTCCTAGATTGATCGCACTGATATCATCCGGCTGGCCGCGGCCCCATGAAAG] [-] EMBL BI503233 [TTTTTGTCCTTTCCTCCGAACGCGCTGGCCACGAGATAAACAAGGATGAAGATGACTTCTTTTTCGTGTTTACATATCGTCAGAGAGGATCGAACGTAACACAGCTTGATAAACATATCGCTGCTGACCCCGCCATTCTTCTCCCATNCTAAACAGCGGTCTCTGTATGACTGTGACTTGACAATCTTTCCACATCTATCTCGGGTATGGTCAGTTCGTCTGGGTTGTTATCGGCGTATTCAATGCTGCTCGTTTGCGAGAGCCGCTTGCTTAAGGACGACTGTTTTCTCAGTACCTCCGCCAATGTAGTGCTGCTGTGCTCGCTCGTGTAGCGTGCGTCTAGGCCCTGCCGAAATGCGTTCACTACGCGGATAGCTTGGTCTGTCGAACTCTTGCTGTAGGGTACTGGTATCAAACGTTCCTGCAACTCGCCACCTATTACCTGTGTCTGTAGTCGTGTTAGACCACGGATCCATAGAATTTGTCCTGCGCGCGGCTTTTTATCCGAGTCAGGGTCGAATTTCTCATCTCCTAGATTGATCGCACTGATATCATCCGG ] [-] EMBL BI508091 [ TTTGTCCTTTCCTCCGAACGCGCTGGCCACGAGATAAACAAGGATGAAGATGACTTCTTTTTCGTGTTTACATATCGTCAGAGAGGATCGAACGTAACACAGCTTGATAAACATATCGCTGCTGACCCCGCCATTCTTCTCCCATTCTAAACAGCGGTCTCTGTATGACTGTGACTTGACAATCTTTCCACATCTATCTCGGGTATGGTCAGTTCGTCTGGGTTGTTATCGGCGTATTCAATGCTGCTCGTTTGCGAGAGCCGCTTGCTTAAGGACGACTGTTTTCTCAGTACCTCCGCCAATGTAGTGCTGCTGTGCTCGCTCGTGTAGCGTGCGTCTAGGCCCTGCCGAAATGCGTTCACTACGCGGATAGCTTGGTCTGTCGAACTCTTGCTGTAGGGTACTGGTATCAAACGTTCCTGCAACTCGCCACCTATTACCTGTGTCTGTAGTCGTGTTAGACCACGGATCCATAGAATTTGTCCTGCGCGCGGCTTTTTATCCGAGTCAGGGTCGAATTTCTCATCTCCTAGATTGATCGCACTGATATCATCCGGCTGGCCGCGGCCCCATGAAAG] consensusID : consensus_347#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [TGTAGTGCTGCTGTGCTCGCTCGTGTAGCGTGCGTCTAGGCCCTGCCGAAATGCGTTCACTACGCGGATGAAAGGATTTTAGGAATCTTGCGCGTAGGAATAGTTGTAATTACTTGGCCCCACAATAGAGTACCGACTCCGAAGAATAGGCACCACATCCATTGTTCTAATGTGAGAGCTTTCGTGCTGAACGCCATTTTACCATATTGTATGATAACTACCTGCGATAGACATGTCACGATCCAGATAGTGTAAAAGATGGGATTGGTGAATATTCCTTGGAAGACATTACGCTGACCATGGATTTTTCTAGCGTTAAATTCGTTGAAAAGTGTCATCATGACGAATGTATTAAAGATAATAGTAAAGTGTTGCGTTGGACCGCCACCAGCCTGCGCAACTCCTCGGCCTGTTTCGATGTCGAGCATCTTATCACCAACGAAAAGAAGCATAAAAATTACAGTCAACTGATAGATAGCTTGGCCAAGAATGTTCTTCATCATTGTCCTGGAAATGAGCGGT] [-] EMBL BI506905 [TGTAGTGCTGCTGTGCTCGCTCGTGTAGCGTGCGTCTAGGCCCTGCCGAAATGCGTTCACTACGCGGATGAAAGGATTTTAGGAATCTTGCGCGTAGGAATAGTTGTAATTACTTGGCCCCACAATAGAGTACCGACTCCGAAGAATAGGCACCACATCCATTGTTCTAATGTGAGAGCTTTCGTGCTGAACGCCATTTTACCATATTGTATGATAACTACCTGCGATAGACATGTCACGATCCAGATAGTGTAAAAGATGGGATTGGTGAATATTCCTTGGAAGACATTACGCTGACCATGGATTTTTCTAGCGTTAAATTCGTTGAAAAGTGTCATCATGACGAATGTATTAAAGATAATAGTAAAGTGTTGCGTTGGACCGCCACCAGCCTGCGCAACTCCTCGGCCTGTTTCGATGTCGAGCATCTTATCACCAACGAAAAGAAGCATAAAAATTACAGTCAACTGATAGATAGCTTGGCCAAGAATGTTCTTCATCATTGTCCTGGAAATGAGCGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_347#0 TGTACGCGATGCCTGATCCCGTAACGCTGAGCAACAATGGTGACGTAGAGCTGTTCATCC 60 consensus_347#2 ------------------------------------------------------------ consensus_347#1 ------------------------------------------------------------ consensus_347#0 TGGCGGTCGTATGATCCTCGGCGGTCTTGTTCGGCAAATTGCCCTTGCTGGCGTTCAGCG 120 consensus_347#2 ------------------------------------------------------------ consensus_347#1 ------------------------------------------------------------ consensus_347#0 CACTGTTTGTCGGGTCTTCGTCAATGTATGTGAAGTCAGAAAGTGGTCGGGGCCCAGTGT 180 consensus_347#2 ------------------------------------------------------------ consensus_347#1 ---TTTTTGTCCTTTCCTC-CGAACGCGCTGGCCACGAGATAAACAAGGATGAAGATGAC 56 consensus_347#0 GGCTGCGTGAACTGCGCATACTGTGTAAGCTGTGTAAACTATGGACAGAGCGACGCTCCT 240 consensus_347#2 ------------------------------------------------------------ consensus_347#1 TTCTTTTTCGTGTTTACATATCGTCAGAGAGGATCGAACGTAACACAGCTTGATAAACAT 116 consensus_347#0 CCAAATCTTCTAGAGTCGACTTGAACGCTCTGATTACTCGAAGCTGTGTCTGTAGTCGTG 300 consensus_347#2 ------------------------------------------------------------ consensus_347#1 ---ATCGCTGCTGACCCCGCCATTCTTCTCCCATNCTAAACAGCGGTCTCTGTATGACTG 173 consensus_347#0 TTAGACCACGGATCCATAGAATTTGTCCTGCGCGCGGCTT-TTTATCCGAGTCAGGGTCG 359 consensus_347#2 -----------------------------------------TGTAGTGCTGCTGTGCTCG 19 consensus_347#1 TGACTTGACAATCTTTCCACATCTATCTCGGGTATGGTCAGTTCGTCTGGGTTGTTATCG 233 * * *** consensus_347#0 AATTTCTCA-----TCTCCTAGATTGATCGCACTGATATCATC-CGGCTGGCCGCGGCCC 413 consensus_347#2 C-TCGTGTA-----GCGTGCGTCTAGGCCCTGCCGAAATGCGT-TCACTA--CGCGG--- 67 consensus_347#1 GCGTATTCAATGCTGCTCGTTTGCGAGAGCCGCTTGCTTAAGGACGACTGTTTTCTCAGT 293 * * * * ** * consensus_347#0 CATGAAAGGATTTTAGGAATCTTGCGCGTAGGAATAGTTGTAATTACTTGGCCCCACAAT 473 consensus_347#2 -ATGAAAGGATTTTAGGAATCTTGCGCGTAGGAATAGTTGTAATTACTTGGCCCCACAAT 126 consensus_347#1 ACCTCCGCCAATGTAGTGCTGCTGTGCTCGCTCGTGTAGCGTGCGTCTAGGCCCTGCCGA 353 * * *** * ** ** * ** ***** * consensus_347#0 AGAGTACCGACTCCGAAGAATAGGCACCACATCCATTGTTCTAATGTGAGAGCTTTCGTG 533 consensus_347#2 AGAGTACCGACTCCGAAGAATAGGCACCACATCCATTGTTCTAATGTGAGAGCTTTCGTG 186 consensus_347#1 AATGCGTTCACTACGCGGA-TAGCTTGGTCTGTCGAACTCTTGCTGT-AGGGTACTGGTA 411 * * *** ** ** *** * * * * *** ** * * ** consensus_347#0 CTGAACGCCATTTTACCATATTGTATGATAACTACCTGCGATAGACATGTTACGATCCAG 593 consensus_347#2 CTGAACGCCATTTTACCATATTGTATGATAACTACCTGCGATAGACATGTCACGATCCAG 246 consensus_347#1 TCAAACGTTCCTGCAACTCGCCACCTATTACCTGTGT-CTGTAGTCGTGTTAGACCACGG 470 **** * * * * ** ** * * *** * *** * * * consensus_347#0 ATAGTGTAAAAGATGGGATTGGTGAATATTCCTTGGAAGNCATTACGCTGACCATGGATT 653 consensus_347#2 ATAGTGTAAAAGATGGGATTGGTGAATATTCCTTGGAAGACATTACGCTGACCATGGATT 306 consensus_347#1 ATC-CATAGAATTTGTCCTGCGCGCG-GCTTTTTATCCGAGTCAGGGTCGAATTTCTCAT 528 ** ** ** ** * * * * ** * * ** * * consensus_347#0 TTTCTAGCGTTAAATTCGTTG--------------------------------------- 674 consensus_347#2 TTTCTAGCGTTAAATTCGTTGAAAAGTGTCATCATGACGAATGTATTAAAGATAATAGTA 366 consensus_347#1 CTCCTAG-ATTGATCGCACTGATATCATCCGGCTGGCCGCGGCCCCATGAAAG------- 580 * **** ** * * ** consensus_347#0 ------------------------------------------------------------ consensus_347#2 AAGTGTTGCGTTGGACCGCCACCAGCCTGCGCAACTCCTCGGCCTGTTTCGATGTCGAGC 426 consensus_347#1 ------------------------------------------------------------ consensus_347#0 ------------------------------------------------------------ consensus_347#2 ATCTTATCACCAACGAAAAGAAGCATAAAAATTACAGTCAACTGATAGATAGCTTGGCCA 486 consensus_347#1 ------------------------------------------------------------ consensus_347#0 ------------------------------------ consensus_347#2 AGAATGTTCTTCATCATTGTCCTGGAAATGAGCGGT 522 consensus_347#1 ------------------------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |